def test_intersect(self):
isamp = self.gen_fake_isamp()
series = Series('GSE0')
sample_list = [Sample('GSM10', series), Sample('GSM20', series)]
for __ in sample_list :
series.add_passed_sample(__)
self.assertEqual(ppr.intersect(series, isamp), sample_list)
def test_intersect_with_discrenpacy(self, L):
isamp = self.gen_fake_isamp()
series = Series('GSE0')
sample_list = [Sample('GSM10', series)]
for __ in sample_list :
series.add_passed_sample(__)
self.assertEqual(ppr.intersect(series, isamp), sample_list)
L.check(('rsempipeline.utils.pre_pipeline_run', 'ERROR',
'Discrepancy for GSE0: 1 GSMs in soft, 2 GSMs in isamp, and only 1 left after intersection.'),)