def test_bug_no_dpi_no_aruco():
#import matplotlib.text
from sandbox import _calibration_dir
_calibprojector = _calibration_dir + "my_projector_calibration.json"
_calibsensor = _calibration_dir + "my_sensor_calibration.json"
from sandbox.sensor import Sensor
sensor = Sensor(calibsensor=_calibsensor, name="dummy")
from sandbox.projector import Projector
projector = Projector(calibprojector=_calibprojector, use_panel = False)
# Initialize the aruco detection
from sandbox.main_thread import MainThread
main = MainThread(sensor=sensor, projector=projector)
# Start the thread
main.update()
projector.trigger()
def __init__(self,
calibprojector: str = None,
name: str = 'kinectv2',
**kwargs):
# color map setup
self.c_under = '#DBD053'
self.c_over = '#DB3A34'
# margin patches setup
self.c_margin = '#084C61'
self.margin_alpha = 0.5
self.calibprojector = calibprojector
self.sensor = Sensor(name=name,
invert=False,
clip_values=False,
gauss_filter=False,
**kwargs)
self.projector = Projector(calibprojector=self.calibprojector,
**kwargs)
import copy
self.cmap = copy.copy(mpl.cm.get_cmap("Greys_r"))
self.cmap.set_over(self.c_over)
self.cmap.set_under(self.c_under)
self.cmap.set_bad('k')
self._refresh_panel_frame()
# fig = plt.figure()
self.figure = Figure()
self.ax_notebook_frame = plt.Axes(self.figure, [0., 0., 1., 1.])
self.figure.add_axes(self.ax_notebook_frame)
self.calib_notebook_frame = pn.pane.Matplotlib(self.figure,
tight=False,
height=300)
plt.close() # close figure to prevent inline display
pn.state.add_periodic_callback(self.update_panel_frame, 5)
# self.projector.panel.add_periodic_callback(self.update_panel_frame, 5)
self.frame_raw = self.sensor.get_raw_frame()
self.ax_notebook_frame.imshow(self.frame_raw,
vmin=self.sensor.s_min,
vmax=self.sensor.s_max,
cmap=self.cmap,
origin="lower",
aspect="auto")
self.calib_notebook_frame.param.trigger('object')
self._create_widgets()
def test_with_gempy():
from sandbox import _calibration_dir, _test_data
file = np.load(_test_data['topo'] + "DEM1.npz")
frame = file['arr_0']
frame = frame + np.abs(frame.min())
_calibprojector = _calibration_dir + "my_projector_calibration.json"
_calibsensor = _calibration_dir + "my_sensor_calibration.json"
from sandbox.sensor import Sensor
sensor = Sensor(calibsensor=_calibsensor, name="dummy")
from sandbox.projector import Projector
projector = Projector(calibprojector=_calibprojector)
# Initialize the aruco detection
from sandbox.main_thread import MainThread
mainT = MainThread(sensor=sensor, projector=projector)
mainT.load_frame(frame)
# Start the thread
#mainT.run()
from sandbox.modules.gempy import GemPyModule
gpsb = GemPyModule(geo_model=None,
extent=sensor.extent,
box=sensor.physical_dimensions,
load_examples=True,
name_example=['Fault'])
mainT.add_module(name='gempy', module=gpsb)
mainT.update()
def test_topo_module():
from sandbox import _calibration_dir, _test_data
file = np.load(_test_data['topo'] + "DEM1.npz")
frame = file['arr_0']
frame = frame + np.abs(frame.min())
_calibprojector = _calibration_dir + "my_projector_calibration.json"
_calibsensor = _calibration_dir + "my_sensor_calibration.json"
from sandbox.sensor import Sensor
sensor = Sensor(calibsensor=_calibsensor, name="dummy")
from sandbox.projector import Projector
projector = Projector(calibprojector=_calibprojector)
# Initialize the aruco detection
from sandbox.main_thread import MainThread
mainT = MainThread(sensor=sensor, projector=projector)
mainT.load_frame(frame)
# Start the thread
#mainT.run()
from sandbox.modules import TopoModule
module = TopoModule(extent = extent)
mainT.add_module(name='Topo', module=module)
module.sea = True
module.sea_contour = True
mainT.update()
def start_server(filename_projector: str = _calibration_dir +
"my_projector_calibration.json",
filename_sensor: str = _calibration_dir +
"my_sensor_calibration.json",
sensor_name='kinect_v2',
aruco_marker=True,
gempy_module=False,
**kwargs):
#**projector_kwargs,
#**sensor_kwargs,
#**gempy_kwargs):
from sandbox.projector import Projector
from sandbox.sensor import Sensor
from sandbox.markers import MarkerDetection
if filename_projector is None:
projector = Projector(use_panel=True, **kwargs)
else:
projector = Projector(calibprojector=filename_projector,
use_panel=True,
**kwargs)
if filename_sensor is None:
sensor = Sensor(name=sensor_name, **kwargs)
else:
sensor = Sensor(calibsensor=filename_sensor,
name=sensor_name,
**kwargs)
if aruco_marker:
aruco = MarkerDetection(sensor=sensor)
else:
aruco = None
module = Sandbox(sensor=sensor,
projector=projector,
aruco=aruco,
gempy_module=gempy_module,
**kwargs)
module.start()
return module
def test_thread_kinectv2():
from sandbox import _calibration_dir
from sandbox.markers import MarkerDetection
projector_2 = Projector(use_panel=True)
sensor_2 = Sensor(name='kinect_v2', calibsensor=_calibration_dir+'my_sensor_calibration.json')
aruco = MarkerDetection(sensor=sensor_2)
smain = MainThread(sensor_2, projector_2, aruco)
smain.sb_params['active_contours'] = True
smain.sb_params['active_cmap'] = True
smain.run()
def test_thread_module():
from sandbox.modules import TopoModule, GradientModule
proj = Projector(use_panel=True)
sens = Sensor(name='kinect_v2', invert=True)
smain = MainThread(sens, proj)
topo = TopoModule(extent=sens.extent)
grad = GradientModule(extent=sens.extent)
smain.modules = [topo]
smain.run()
def test_bug_no_dpi():
from sandbox import _calibration_dir
_calibprojector = _calibration_dir + "my_projector_calibration.json"
_calibsensor = _calibration_dir + "my_sensor_calibration.json"
from sandbox.sensor import Sensor
sensor = Sensor(calibsensor=_calibsensor, name="kinect_v2")
from sandbox.projector import Projector
projector = Projector(calibprojector=_calibprojector)
# Initialize the aruco detection
from sandbox.markers import MarkerDetection
aruco = MarkerDetection(sensor=sensor)
from sandbox.main_thread import MainThread
main = MainThread(sensor=sensor, projector=projector, aruco=aruco)
# Start the thread
main.run()
def test_widgets_calibration():
projector = Projector(use_panel=True)
widget = projector.calibrate_projector()
widget.show()
projector2 = Projector(calibprojector=calib_dir +
'test_projector_calibration.json',
use_panel=True)
widget2 = projector2.calibrate_projector()
widget2.show()
def start_server(calibprojector: str = None, # _calibration_dir + "my_projector_calibration.json",
calibsensor: str = None, # _calibration_dir + "my_sensor_calibration.json",
sensor_name: str = None,
aruco_marker: bool = True,
kwargs_external_modules: dict = {},
kwargs_gempy_module: dict = {},
kwargs_projector: dict = {},
kwargs_sensor: dict = {},
kwargs_aruco: dict = {},
):
global name_sensor, p_width, p_height
if sensor_name is None:
sensor_name = name_sensor
else:
name_sensor = sensor_name
from sandbox.projector import Projector
if kwargs_projector.get("p_width") is not None:
p_width = kwargs_projector.get("p_width")
if kwargs_projector.get("p_height") is not None:
p_height = kwargs_projector.get("p_height")
projector = Projector(calibprojector=calibprojector, use_panel=True, **kwargs_projector)
from sandbox.sensor import Sensor
sensor = Sensor(calibsensor=calibsensor, name=sensor_name, **kwargs_sensor)
if aruco_marker:
from sandbox.markers import MarkerDetection
aruco = MarkerDetection(sensor=sensor, **kwargs_aruco)
else:
aruco = None
module = Sandbox(sensor=sensor,
projector=projector,
aruco=aruco,
kwargs_gempy_module=kwargs_gempy_module,
kwargs_external_modules=kwargs_external_modules)
module.start()
return module
def test_delete_ax_image():
projector = Projector(use_panel=False)
projector.ax.plot([10, 20, 30], [20, 39, 48])
projector.clear_axes()
def test_trigger():
projector = Projector(use_panel=True)
projector.ax.plot([10, 20, 30], [20, 39, 48])
projector.trigger()
def test_open_panel_browser():
projector = Projector(use_panel=False)
projector.start_server()
def test_save_load_calibration_projector():
projector = Projector(use_panel=False)
file = calib_dir + 'test_projector_calibration.json'
projector.save_json(file=file)
# now to test if it loads correctly the saved one
projector2 = Projector(calibprojector=file, use_panel=False)
def test_init_projector():
projector = Projector(use_panel=False)
assert projector.panel is not None
class CalibSensor: # TODO: include automatic
"""Module to calibrate the sensor"""
def __init__(self,
calibprojector: str = None,
name: str = 'kinectv2',
**kwargs):
# color map setup
self.c_under = '#DBD053'
self.c_over = '#DB3A34'
# margin patches setup
self.c_margin = '#084C61'
self.margin_alpha = 0.5
self.calibprojector = calibprojector
self.sensor = Sensor(name=name,
invert=False,
clip_values=False,
gauss_filter=False,
**kwargs)
self.projector = Projector(calibprojector=self.calibprojector,
**kwargs)
import copy
self.cmap = copy.copy(mpl.cm.get_cmap("Greys_r"))
self.cmap.set_over(self.c_over)
self.cmap.set_under(self.c_under)
self.cmap.set_bad('k')
self._refresh_panel_frame()
# fig = plt.figure()
self.figure = Figure()
self.ax_notebook_frame = plt.Axes(self.figure, [0., 0., 1., 1.])
self.figure.add_axes(self.ax_notebook_frame)
self.calib_notebook_frame = pn.pane.Matplotlib(self.figure,
tight=False,
height=300)
plt.close() # close figure to prevent inline display
pn.state.add_periodic_callback(self.update_panel_frame, 5)
# self.projector.panel.add_periodic_callback(self.update_panel_frame, 5)
self.frame_raw = self.sensor.get_raw_frame()
self.ax_notebook_frame.imshow(self.frame_raw,
vmin=self.sensor.s_min,
vmax=self.sensor.s_max,
cmap=self.cmap,
origin="lower",
aspect="auto")
self.calib_notebook_frame.param.trigger('object')
self._create_widgets()
def _refresh_panel_frame(self):
self.projector.ax.cla()
self.fig_frame = self.projector.ax.imshow(self.sensor.get_frame(),
vmin=self.sensor.s_min,
vmax=self.sensor.s_max,
cmap=self.cmap,
origin="lower",
aspect="auto")
def update(self):
self.update_panel_frame(self.projector.ax)
self.update_notebook_frame(self.ax_panel_frame)
def update_panel_frame(self):
frame = self.sensor.get_frame()
self.fig_frame.set_data(frame)
# self.projector.ax.set_xlim(0, self.sensor.s_frame_width)
# self.projector.ax.set_ylim(0, self.sensor.s_frame_height)
self.fig_frame.set_clim(vmin=self.sensor.s_min, vmax=self.sensor.s_max)
self.projector.trigger()
def update_notebook_frame(self):
""" Adds margin patches to the current plot object.
This is only useful when an uncropped dataframe is passed.
"""
self.ax_notebook_frame.cla()
self.ax_notebook_frame.imshow(self.frame_raw,
vmin=self.sensor.s_min,
vmax=self.sensor.s_max,
cmap=self.cmap,
origin="lower",
aspect="auto")
rec_t = plt.Rectangle((0, self.sensor.s_height - self.sensor.s_top),
self.sensor.s_width,
self.sensor.s_top,
fc=self.c_margin,
alpha=self.margin_alpha)
rec_r = plt.Rectangle((self.sensor.s_width - self.sensor.s_right, 0),
self.sensor.s_right,
self.sensor.s_height,
fc=self.c_margin,
alpha=self.margin_alpha)
rec_b = plt.Rectangle((0, 0),
self.sensor.s_width,
self.sensor.s_bottom,
fc=self.c_margin,
alpha=self.margin_alpha)
rec_l = plt.Rectangle((0, 0),
self.sensor.s_left,
self.sensor.s_height,
fc=self.c_margin,
alpha=self.margin_alpha)
self.ax_notebook_frame.add_patch(rec_t)
self.ax_notebook_frame.add_patch(rec_r)
self.ax_notebook_frame.add_patch(rec_b)
self.ax_notebook_frame.add_patch(rec_l)
self.calib_notebook_frame.param.trigger('object')
def calibrate_sensor(self):
widgets = pn.WidgetBox(
'<b>Load a projector calibration file</b>',
self._widget_json_filename_load_projector,
self._widget_json_load_projector,
'<b>Distance from edges (pixel)</b>',
self._widget_s_top,
self._widget_s_right,
self._widget_s_bottom,
self._widget_s_left,
# self._widget_s_enable_auto_cropping,
# self._widget_s_automatic_cropping,
pn.layout.VSpacer(height=5),
'<b>Distance from sensor (mm)</b>',
self._widget_s_min,
self._widget_s_max,
self._widget_refresh_frame)
box = pn.Column(
'<b>Physical dimensions of the sandbox</b>',
self._widget_box_width,
self._widget_box_height,
)
save = pn.Column('<b>Save file</b>', self._widget_json_filename,
self._widget_json_save)
rows = pn.Row(widgets, self.calib_notebook_frame)
panel = pn.Column('## Sensor calibration', rows)
tabs = pn.Tabs(('Calibration', panel), ("Box dimensions", box),
("Save files", save))
return tabs
def _create_widgets(self):
# sensor widgets and links
self._widget_s_top = pn.widgets.IntSlider(name='Sensor top margin',
bar_color=self.c_margin,
value=self.sensor.s_top,
start=1,
end=self.sensor.s_height)
self._widget_s_top.param.watch(self._callback_s_top,
'value',
onlychanged=False)
self._widget_s_right = pn.widgets.IntSlider(name='Sensor right margin',
bar_color=self.c_margin,
value=self.sensor.s_right,
start=1,
end=self.sensor.s_width)
self._widget_s_right.param.watch(self._callback_s_right,
'value',
onlychanged=False)
self._widget_s_bottom = pn.widgets.IntSlider(
name='Sensor bottom margin',
bar_color=self.c_margin,
value=self.sensor.s_bottom,
start=1,
end=self.sensor.s_height)
self._widget_s_bottom.param.watch(self._callback_s_bottom,
'value',
onlychanged=False)
self._widget_s_left = pn.widgets.IntSlider(name='Sensor left margin',
bar_color=self.c_margin,
value=self.sensor.s_left,
start=1,
end=self.sensor.s_width)
self._widget_s_left.param.watch(self._callback_s_left,
'value',
onlychanged=False)
self._widget_s_min = pn.widgets.IntSlider(name='Vertical minimum',
bar_color=self.c_under,
value=self.sensor.s_min,
start=0,
end=2000)
self._widget_s_min.param.watch(self._callback_s_min,
'value',
onlychanged=False)
self._widget_s_max = pn.widgets.IntSlider(name='Vertical maximum',
bar_color=self.c_over,
value=self.sensor.s_max,
start=0,
end=2000)
self._widget_s_max.param.watch(self._callback_s_max,
'value',
onlychanged=False)
# Auto cropping widgets:
# self._widget_s_enable_auto_cropping = pn.widgets.Checkbox(name='Enable Automatic Cropping', value=False)
# self._widget_s_enable_auto_cropping.param.watch(self._callback_enable_auto_cropping, 'value',
# onlychanged=False)
# self._widget_s_automatic_cropping = pn.widgets.Button(name="Crop", button_type="success")
# self._widget_s_automatic_cropping.param.watch(self._callback_automatic_cropping, 'clicks',
# onlychanged=False)
# box widgets:
# self._widget_s_enable_auto_calibration = CheckboxGroup(labels=["Enable Automatic Sensor Calibration"],
# active=[1])
self._widget_box_width = pn.widgets.IntSlider(
name='width of sandbox in mm',
bar_color=self.c_margin,
value=int(self.sensor.box_width),
start=1,
end=2000)
self._widget_box_width.param.watch(self._callback_box_width,
'value',
onlychanged=False)
# self._widget_s_automatic_calibration = pn.widgets.Toggle(name="Run", button_type="success")
self._widget_box_height = pn.widgets.IntSlider(
name='height of sandbox in mm',
bar_color=self.c_margin,
value=int(self.sensor.box_height),
start=1,
end=2000)
self._widget_box_height.param.watch(self._callback_box_height,
'value',
onlychanged=False)
# refresh button
self._widget_refresh_frame = pn.widgets.Button(
name='Refresh sensor frame\n(3 sec. delay)!')
self._widget_refresh_frame.param.watch(self._callback_refresh_frame,
'clicks',
onlychanged=False)
# save selection
# Only for reading files --> Is there no location picker in panel widgets???
# self._widget_json_location = pn.widgets.FileInput(name='JSON location')
self._widget_json_filename = pn.widgets.TextInput(
name='Choose a calibration filename:')
self._widget_json_filename.param.watch(self._callback_json_filename,
'value',
onlychanged=False)
self._widget_json_filename.value = _calibration_dir + 'my_sensor_calibration.json'
self._widget_json_save = pn.widgets.Button(name='Save calibration')
self._widget_json_save.param.watch(self._callback_json_save,
'clicks',
onlychanged=False)
self._widget_json_filename_load_projector = pn.widgets.TextInput(
name='Choose the projector calibration filename:')
self._widget_json_filename_load_projector.param.watch(
self._callback_json_filename_load_projector,
'value',
onlychanged=False)
self._widget_json_filename_load_projector.value = _calibration_dir + 'my_projector_calibration.json'
self._widget_json_load_projector = pn.widgets.Button(
name='Load calibration')
self._widget_json_load_projector.param.watch(
self._callback_json_load_projector, 'clicks', onlychanged=False)
return True
# sensor callbacks
def _callback_s_top(self, event):
self.sensor.s_top = event.new
# change plot and trigger panel update
self.update_notebook_frame()
def _callback_s_right(self, event):
self.sensor.s_right = event.new
# self._refresh_panel_frame() #TODO: dirty workaround
self.update_notebook_frame()
def _callback_s_bottom(self, event):
self.sensor.s_bottom = event.new
self.update_notebook_frame()
def _callback_s_left(self, event):
self.sensor.s_left = event.new
# self._refresh_panel_frame() # TODO: dirty workaround
self.update_notebook_frame()
def _callback_s_min(self, event):
self.sensor.s_min = event.new
# self._refresh_panel_frame() # TODO: dirty workaround
self.update_notebook_frame()
def _callback_s_max(self, event):
self.sensor.s_max = event.new
# self._refresh_panel_frame() # TODO: dirty workaround
self.update_notebook_frame()
def _callback_refresh_frame(self, event):
plt.pause(3)
# only here, get a new frame before updating the plot
self.frame_raw = self.sensor.get_raw_frame()
self.update_notebook_frame()
def _callback_json_filename(self, event):
self.sensor.json_filename = event.new
def _callback_json_save(self, event):
if self.sensor.json_filename is not None:
self.sensor.save_json(file=self.sensor.json_filename)
def _callback_json_filename_load_projector(self, event):
self.calibprojector = event.new
def _callback_json_load_projector(self, event):
if self.calibprojector is not None:
self.projector = Projector(self.calibprojector)
def _callback_box_width(self, event):
self.sensor.box_width = float(event.new)
def _callback_box_height(self, event):
self.sensor.box_height = float(event.new)
# TODO: Make sense to enable this automatic calibration?
"""def _callback_enable_auto_calibration(self, event):
def test_run(): #TODO: runs but does not show contour lines
projector_2 = Projector(use_panel=True)
sensor_2 = Sensor(name='dummy')
smain = MainThread(sensor_2, projector_2)
smain.run()
def test_update():
projector_2 = Projector(use_panel=True)
sensor_2 = Sensor(name='dummy')
smain = MainThread(sensor_2, projector_2)
smain.update()
def test_delete_points():
projector = Projector(use_panel=False)
line1 = projector.ax.plot([10, 20, 30], [20, 39, 48])
projector.trigger()
del line1
projector.trigger()
def calibrate_projector():
from sandbox.projector import Projector
proj = Projector(use_panel=True)
widget = proj.calibrate_projector()
widget.show()
return proj
from sandbox import _test_data as test_data
from sandbox.main_thread import MainThread
from sandbox.projector import Projector
from sandbox.sensor import Sensor
import matplotlib.pyplot as plt
import numpy as np
file = np.load(test_data['topo'] + "DEM1.npz")
frame = file['arr_0']
frame = frame + np.abs(frame.min())
extent = np.asarray([0, frame.shape[1], 0, frame.shape[0], frame.min(), frame.max()])
projector = Projector(use_panel=False)
sensor = Sensor(name='dummy')
def test_init():
smain = MainThread(sensor, projector)
print(smain)
def test_update():
projector_2 = Projector(use_panel=True)
sensor_2 = Sensor(name='dummy')
smain = MainThread(sensor_2, projector_2)
smain.update()
def test_run(): #TODO: runs but does not show contour lines
projector_2 = Projector(use_panel=True)
sensor_2 = Sensor(name='dummy')
smain = MainThread(sensor_2, projector_2)
smain.run()
def _callback_json_load_projector(self, event):
if self.calibprojector is not None:
self.projector = Projector(self.calibprojector)
# sandbox_server.py
from bokeh.plotting import curdoc
from sandbox import _calibration_dir
_calibprojector = _calibration_dir + "my_projector_calibration.json"
_calibsensor = _calibration_dir + "my_sensor_calibration.json"
from sandbox.projector import Projector
from sandbox.sensor import Sensor
from sandbox.markers import MarkerDetection
projector = Projector(calibprojector=_calibprojector, use_panel=True)
sensor = Sensor(calibsensor=_calibsensor, name="kinect_v2")
aruco = MarkerDetection(sensor=sensor)
external_modules = dict(gempy_module=True,
gimli_module=True,
torch_module=True,
devito_module=True)
from sandbox.sandbox_api import Sandbox
module = Sandbox(sensor=sensor,
projector=projector,
aruco=aruco,
kwargs_external_modules=external_modules)
main_widget = module.show_widgets()
current = main_widget.get_root()
curdoc().add_root(current)
