def test_boolean_property(self):
sbol3.set_namespace('https://github.com/synbiodex/pysbol3')
c = sbol3.Component('c1', sbol3.SBO_DNA)
c.boolean_attribute = sbol3.BooleanProperty(c, 'http://example.org#foo',
0, 1, [])
c.boolean_attribute = True
self.assertEqual(type(c.boolean_attribute), bool)
def __init__(self, identity, type_uri=PYSBOL3_CUSTOM_TOP):
super().__init__(identity, type_uri)
# Also test the boolean list while we're here
self.foo_bool = sbol3.BooleanProperty(self, PYSBOL3_CUSTOM_BOOL, 0,
math.inf)
self.children = sbol3.OwnedObject(self, PYSBOL3_CUSTOM_CHILD, 0,
math.inf)
def test_bounds(self):
sbol3.set_namespace('https://github.com/synbiodex/pysbol3')
c = sbol3.Component('c1', sbol3.SBO_DNA)
c.boolean_attribute = sbol3.BooleanProperty(c, 'http://example.org#foo',
0, math.inf, [])
self.assertTrue(hasattr(c.boolean_attribute, '__iter__'))
with self.assertRaises(TypeError):
c.boolean_attribute = True
c.int_attribute = sbol3.IntProperty(c, 'http://example.org#foo',
0, math.inf, [])
self.assertTrue(hasattr(c.int_attribute, '__iter__'))
with self.assertRaises(TypeError):
c.int_attribute = 0
def __init__(self, *args, **kwargs):
base_kwargs = {
kw: val
for kw, val in kwargs.items() if kw not in property_names
}
if 'type_uri' not in base_kwargs:
base_kwargs['type_uri'] = CLASS_URI
Super.__init__(self, *args, **base_kwargs)
if 'http://sbols.org/v3#' in superclass_uri and not superclass_uri == SBOL_TOP_LEVEL and not superclass_uri == SBOL_IDENTIFIED:
if class_is_top_level:
self._rdf_types.append(SBOL_TOP_LEVEL)
else:
self._rdf_types.append(SBOL_IDENTIFIED)
# Initialize associative properties
for property_uri in associative_properties:
property_name = property_uri_to_name[property_uri]
lower_bound, upper_bound = property_cardinalities[property_uri]
self.__dict__[property_name] = sbol.ReferencedObject(
self, property_uri, lower_bound, upper_bound)
# Initialize compositional properties
for property_uri in compositional_properties:
property_name = property_uri_to_name[property_uri]
lower_bound, upper_bound = property_cardinalities[property_uri]
self.__dict__[property_name] = sbol.OwnedObject(
self, property_uri, lower_bound, upper_bound)
# Initialize datatype properties
for property_uri in datatype_properties:
# TODO: Cache query information outside of constructor
property_name = property_uri_to_name[property_uri]
# Get the datatype of this property
datatypes = property_datatypes[property_uri]
if len(datatypes) == 0:
continue
if len(datatypes
) > 1: # This might indicate an error in the ontology
raise
# Get the cardinality of this datatype property
lower_bound, upper_bound = property_cardinalities[property_uri]
if datatypes[0] == 'http://www.w3.org/2001/XMLSchema#string':
self.__dict__[property_name] = sbol.TextProperty(
self, property_uri, lower_bound, upper_bound)
elif datatypes[
0] == 'http://www.w3.org/2001/XMLSchema#integer':
self.__dict__[property_name] = sbol.IntProperty(
self, property_uri, lower_bound, upper_bound)
elif datatypes[
0] == 'http://www.w3.org/2001/XMLSchema#boolean':
self.__dict__[property_name] = sbol.BooleanProperty(
self, property_uri, lower_bound, upper_bound)
elif datatypes[0] == 'http://www.w3.org/2001/XMLSchema#anyURI':
self.__dict__[property_name] = sbol.URIProperty(
self, property_uri, lower_bound, upper_bound)
elif datatypes[
0] == 'http://www.w3.org/2001/XMLSchema#dateTime':
self.__dict__[property_name] = sbol.DateTimeProperty(
self, property_uri, lower_bound, upper_bound)
for kw, val in kwargs.items():
if kw == 'type_uri':
continue
if kw in self.__dict__:
try:
self.__dict__[kw].set(val)
except:
pass