def bench1(mode = 'diag'):
#===========================================
# GMM of 20 comp, 20 dimension, 1e4 frames
#===========================================
d = 15
k = 30
nframes = 1e5
niter = 10
mode = 'diag'
print "============================================================="
print "(%d dim, %d components) GMM with %d iterations, for %d frames" \
% (d, k, niter, nframes)
#+++++++++++++++++++++++++++++++++++++++++++
# Create an artificial GMM model, samples it
#+++++++++++++++++++++++++++++++++++++++++++
print "Generating the mixture"
# Generate a model with k components, d dimensions
w, mu, va = GM.gen_param(d, k, mode, spread = 3)
# gm = GM(d, k, mode)
# gm.set_param(w, mu, va)
gm = GM.fromvalues(w, mu, va)
# Sample nframes frames from the model
data = gm.sample(nframes)
#++++++++++++++++++++++++
# Learn the model with EM
#++++++++++++++++++++++++
# Init the model
print "Init a model for learning, with kmean for initialization"
lgm = GM(d, k, mode)
gmm = GMM(lgm, 'kmean')
gmm.init(data)
# Keep the initialized model for drawing
gm0 = copy.copy(lgm)
# The actual EM, with likelihood computation
like = N.zeros(niter)
print "computing..."
for i in range(niter):
print "iteration %d" % i
g, tgd = gmm.sufficient_statistics(data)
like[i] = N.sum(N.log(N.sum(tgd, 1)))
gmm.update_em(data, g)
def bench1(mode='diag'):
#===========================================
# GMM of 20 comp, 20 dimension, 1e4 frames
#===========================================
d = 15
k = 30
nframes = 1e5
niter = 10
mode = 'diag'
print "============================================================="
print "(%d dim, %d components) GMM with %d iterations, for %d frames" \
% (d, k, niter, nframes)
#+++++++++++++++++++++++++++++++++++++++++++
# Create an artificial GMM model, samples it
#+++++++++++++++++++++++++++++++++++++++++++
print "Generating the mixture"
# Generate a model with k components, d dimensions
w, mu, va = GM.gen_param(d, k, mode, spread=3)
# gm = GM(d, k, mode)
# gm.set_param(w, mu, va)
gm = GM.fromvalues(w, mu, va)
# Sample nframes frames from the model
data = gm.sample(nframes)
#++++++++++++++++++++++++
# Learn the model with EM
#++++++++++++++++++++++++
# Init the model
print "Init a model for learning, with kmean for initialization"
lgm = GM(d, k, mode)
gmm = GMM(lgm, 'kmean')
gmm.init(data)
# Keep the initialized model for drawing
gm0 = copy.copy(lgm)
# The actual EM, with likelihood computation
like = N.zeros(niter)
print "computing..."
for i in range(niter):
print "iteration %d" % i
g, tgd = gmm.sufficient_statistics(data)
like[i] = N.sum(N.log(N.sum(tgd, 1)))
gmm.update_em(data, g)
from scipy.sandbox.pyem import GM, GMM, EM
import copy
seed(2)
k = 4
d = 2
mode = 'diag'
nframes = 1e3
#+++++++++++++++++++++++++++++++++++++++++++
# Create an artificial GMM model, samples it
#+++++++++++++++++++++++++++++++++++++++++++
w, mu, va = GM.gen_param(d, k, mode, spread = 1.0)
gm = GM.fromvalues(w, mu, va)
# Sample nframes frames from the model
data = gm.sample(nframes)
#++++++++++++++++++++++++
# Learn the model with EM
#++++++++++++++++++++++++
# List of learned mixtures lgm[i] is a mixture with i+1 components
lgm = []
kmax = 6
bics = N.zeros(kmax)
em = EM()
for i in range(kmax):
lgm.append(GM(d, i+1, mode))
# Meta parameters of the model # - k: Number of components # - d: dimension of each Gaussian # - mode: Mode of covariance matrix: full or diag (string) # - nframes: number of frames (frame = one data point = one # row of d elements) k = 2 d = 2 mode = 'diag' nframes = 1e3 #+++++++++++++++++++++++++++++++++++++++++++ # Create an artificial GM model, samples it #+++++++++++++++++++++++++++++++++++++++++++ w, mu, va = GM.gen_param(d, k, mode, spread=1.5) gm = GM.fromvalues(w, mu, va) # Sample nframes frames from the model data = gm.sample(nframes) #++++++++++++++++++++++++ # Learn the model with EM #++++++++++++++++++++++++ # Init the model lgm = GM(d, k, mode) gmm = GMM(lgm, 'kmean') gmm.init(data) # Keep a copy for drawing later gm0 = copy.copy(lgm)