def test_parse_wrong_sex():
# GIVEN a individual with wrong sex format
sample_info = {"sample_id": "1", "sex": "flale", "phenotype": "affected"}
# WHEN a individual is parsed
with pytest.raises(PedigreeError):
# THEN a PedigreeError should be raised
parse_individual(sample_info)
def test_parse_missing_phenotype():
# GIVEN a individual without phenotype
sample_info = {"sample_id": "1", "sex": "male"}
# WHEN a individual is parsed
with pytest.raises(PedigreeError):
# THEN a PedigreeError should be raised
parse_individual(sample_info)
def test_parse_missing_sex():
# GIVEN a individual without sex
sample_info = {"sample_id": "1", "phenotype": "affected"}
# WHEN a individual is parsed
with pytest.raises(PedigreeError):
# THEN a PedigreeError should be raised
parse_individual(sample_info)
def test_parse_missing_phenotype():
# GIVEN a individual without phenotype
sample_info = {
'sample_id': '1',
'sex': 'male',
}
# WHEN a individual is parsed
with pytest.raises(PedigreeError):
# THEN a PedigreeError should be raised
parse_individual(sample_info)
def test_parse_missing_sex():
# GIVEN a individual without sex
sample_info = {
'sample_id': '1',
'phenotype': 'affected',
}
# WHEN a individual is parsed
with pytest.raises(PedigreeError):
# THEN a PedigreeError should be raised
parse_individual(sample_info)
def test_parse_missing_phenotype():
# GIVEN a individual without phenotype
sample_info = {
'sample_id': '1',
'sex': 'male',
}
# WHEN a individual is parsed
with pytest.raises(PedigreeError):
# THEN a PedigreeError should be raised
parse_individual(sample_info)
def test_parse_missing_sex():
# GIVEN a individual without sex
sample_info = {
'sample_id': '1',
'phenotype': 'affected',
}
# WHEN a individual is parsed
with pytest.raises(PedigreeError):
# THEN a PedigreeError should be raised
parse_individual(sample_info)
def test_parse_wrong_sex():
# GIVEN a individual with wrong sex format
sample_info = {
'sample_id': '1',
'sex': 'flale',
'phenotype': 'affected',
}
# WHEN a individual is parsed
with pytest.raises(PedigreeError):
# THEN a PedigreeError should be raised
parse_individual(sample_info)
def test_parse_wrong_sex():
# GIVEN a individual with wrong sex format
sample_info = {
'sample_id': '1',
'sex': 'flale',
'phenotype': 'affected',
}
# WHEN a individual is parsed
with pytest.raises(PedigreeError):
# THEN a PedigreeError should be raised
parse_individual(sample_info)
