def checkpoint(self):
for obj in [
SeisflowsParameters(),
SeisflowsPaths(),
SeisflowsObjects()
]:
obj.save(PATH.OUTPUT)
def __init__(self):
""" Loads any required dependencies
"""
from seisflows.tools.config import SeisflowsParameters, SeisflowsPaths
import solver
PAR = SeisflowsParameters()
PATH = SeisflowsPaths()
self.path = PATH.PRECOND
self.load = solver.load
self.merge = solver.merge
import os
from os.path import abspath, join
import numpy as np
from seisflows.tools import unix
from seisflows.tools.config import SeisflowsParameters, SeisflowsPaths, \
ParameterError, loadclass
PAR = SeisflowsParameters()
PATH = SeisflowsPaths()
class serial(loadclass('system', 'base')):
""" An interface through which to submit workflows, run tasks in serial or
parallel, and perform other system functions.
By hiding environment details behind a python interface layer, these
classes provide a consistent command set across different computing
environments.
For more informations, see
http://seisflows.readthedocs.org/en/latest/manual/manual.html#system-interfaces
"""
def check(self):
""" Checks parameters and paths
"""
if 'TITLE' not in PAR:
from seisflows.tools.config import custom_import
from seisflows.tools.config import ParameterError, SeisflowsParameters, SeisflowsPaths
PAR = SeisflowsParameters()
PATH = SeisflowsPaths()
""" For users of tiger.princeton.edu, determines whether
slurm_sm, slurm_md, or slurm_lg should be used.
"""
# ensure number of processers per forward simulation is defined
if 'NPROC' not in PAR:
raise Exception
# there are 16 processers per node on tiger
if 'NODESIZE' in PAR:
assert (PAR.NODESIZE == 16)
else:
PAR.NODESIZE = 16
# which system interface is appropriate?
if PAR.NPROC >= PAR.NODESIZE:
tiger = custom_import('system', 'tiger_lg')
elif PAR.NPROC > 1:
tiger = custom_import('system', 'tiger_md')
else:
tiger = custom_import('system', 'tiger_sm')
#!/bin/env python
from seisflows.tools.config import SeisflowsObjects, SeisflowsParameters, SeisflowsPaths, \
loadclass
SeisflowsParameters().load()
SeisflowsPaths().load()
PAR = SeisflowsParameters()
PATH = SeisflowsPaths()
# run test
if __name__ == '__main__':
if 'SYSTEM' not in PAR:
PAR.SYSTEM = 'serial'
if 'PREPROCESS' not in PAR:
PAR.PREPROCESS = None
if 'SOLVER' not in PAR:
PAR.SOLVER = None
if 'POSTPROCESS' not in PAR:
PAR.POSTPROCESS = None
if 'OPTIMIZE' not in PAR:
PAR.OPTIMIZE = 'base'
if 'WORKFLOW' not in PAR:
#!/bin/env python
from seisflows.tools.config import SeisflowsObjects, SeisflowsParameters, SeisflowsPaths, \
loadclass
SeisflowsParameters().load()
SeisflowsPaths().load()
PAR = SeisflowsParameters()
PATH = SeisflowsPaths()
# run test
if __name__ == '__main__':
if 'SYSTEM' not in PAR:
PAR.SYSTEM = 'serial'
if 'PREPROCESS' not in PAR:
PAR.PREPROCESS = None
if 'SOLVER' not in PAR:
PAR.SOLVER = None
if 'POSTPROCESS' not in PAR:
PAR.POSTPROCESS = None
if 'OPTIMIZE' not in PAR:
PAR.OPTIMIZE = None
if 'WORKFLOW' not in PAR:
PAR.WORKFLOW = 'test_system'
#!/bin/env python
from seisflows.tools.config import SeisflowsObjects, SeisflowsParameters, SeisflowsPaths, \
loadclass
SeisflowsParameters().load()
SeisflowsPaths().load()
PAR = SeisflowsParameters()
PATH = SeisflowsPaths()
# run test
if __name__ == '__main__':
if 'SYSTEM' not in PAR:
PAR.SYSTEM = 'serial'
if 'PREPROCESS' not in PAR:
PAR.PREPROCESS = None
if 'SOLVER' not in PAR:
PAR.SOLVER = None
if 'POSTPROCESS' not in PAR:
PAR.POSTPROCESS = None
if 'OPTIMIZE' not in PAR:
PAR.OPTIMIZE = None
if 'WORKFLOW' not in PAR:
from seisflows.tools.config import custom_import
from seisflows.tools.config import ParameterError, SeisflowsParameters, SeisflowsPaths
PAR = SeisflowsParameters()
PATH = SeisflowsPaths()
""" For users of tiger.princeton.edu, determines whether
slurm_sm, slurm_md, or slurm_lg should be used.
"""
# ensure number of processers per forward simulation is defined
if 'NPROC' not in PAR:
raise Exception
# there are 16 processers per node on tiger
if 'NODESIZE' in PAR:
assert(PAR.NODESIZE == 16)
else:
PAR.NODESIZE = 16
# which system interface is appropriate?
if PAR.NPROC >= PAR.NODESIZE:
tiger = custom_import('system','tiger_lg')
elif PAR.NPROC > 1:
tiger = custom_import('system','tiger_md')
else:
tiger = custom_import('system','tiger_sm')
