def __init__(self):
ExhaustiveAlgorithm.__init__(self)
self.alignment_threshold = self.options.alignment_threshold
self.placer = self.options.exhaustive.placer.lower()
self.push_down = True if self.options.push_down == True else False
_LOG.info("Will push fragments %s from their placement edge." %
("down" if self.push_down else "up"))
def __init__(self):
ExhaustiveAlgorithm.__init__(self)
self.alignment_threshold = self.options.alignment_threshold
self.placer = self.options.exhaustive.placer.lower()
self.push_down = True if self.options.push_down is True else False
_LOG.info("Will push fragments %s from their placement edge." % (
"down" if self.push_down else "up"))
def __init__(self):
ExhaustiveAlgorithm.__init__(self)
self.pasta_only = False
def __init__(self):
ExhaustiveAlgorithm.__init__(self)
self.symfrac = False
self.elim = None
self.filters = True
def __init__(self):
ExhaustiveAlgorithm.__init__(self)
self.pasta_only = False
def __init__(self):
ExhaustiveAlgorithm.__init__(self)
def __init__(self):
ExhaustiveAlgorithm.__init__(self)
self.symfrac = False
self.elim = None
self.filters = True
def __init__(self):
ExhaustiveAlgorithm.__init__(self)
def __init__(self):
ExhaustiveAlgorithm.__init__(self)
self.pasta_only = False
self.filtered_taxa = []