def __init__(self): ExhaustiveAlgorithm.__init__(self) self.alignment_threshold = self.options.alignment_threshold self.placer = self.options.exhaustive.placer.lower() self.push_down = True if self.options.push_down == True else False _LOG.info("Will push fragments %s from their placement edge." % ("down" if self.push_down else "up"))
def __init__(self): ExhaustiveAlgorithm.__init__(self) self.alignment_threshold = self.options.alignment_threshold self.placer = self.options.exhaustive.placer.lower() self.push_down = True if self.options.push_down is True else False _LOG.info("Will push fragments %s from their placement edge." % ( "down" if self.push_down else "up"))
def __init__(self): ExhaustiveAlgorithm.__init__(self) self.pasta_only = False
def __init__(self): ExhaustiveAlgorithm.__init__(self) self.symfrac = False self.elim = None self.filters = True
def __init__(self): ExhaustiveAlgorithm.__init__(self)
def __init__(self): ExhaustiveAlgorithm.__init__(self) self.pasta_only = False self.filtered_taxa = []