def test_invalid(self):
self.assertRaises(
ValueError,
transform.isolate_region(self.sequences, 5, 5).__next__)
self.assertRaises(
ValueError,
transform.isolate_region(self.sequences, 10, 5).__next__)
def test_middle(self):
expected = ['--A--ACTGGA------------', '--AGCACTGGA------------']
start = 1
end = 11
actual = list(transform.isolate_region(self.sequences, start, end))
actual = [str(s.seq) for s in actual]
self.assertEqual(expected, actual)
def test_middle(self):
expected = ['--A--ACTGGA------------', '--AGCACTGGA------------']
start = 1
end = 11
actual = list(transform.isolate_region(self.sequences, start, end))
actual = [str(s.seq) for s in actual]
self.assertEqual(expected, actual)
def test_invalid(self):
self.assertRaises(ValueError, transform.isolate_region(
self.sequences, 5, 5).next)
self.assertRaises(ValueError, transform.isolate_region(
self.sequences, 10, 5).next)
def test_single_loc(self):
start = 2
end = 3
result = list(transform.isolate_region(self.sequences, start, end))
for seq in result:
self.assertEqual('--A--------------------', str(seq.seq))
def test_no_isolation(self):
result = list(transform.isolate_region(self.sequences, 0,
len(self.sequences[0])))
self.assertEqual(self.sequences, result)
def test_single_loc(self):
start = 2
end = 3
result = list(transform.isolate_region(self.sequences, start, end))
for seq in result:
self.assertEqual('--A--------------------', str(seq.seq))
def test_no_isolation(self):
result = list(transform.isolate_region(self.sequences, 0,
len(self.sequences[0])))
self.assertEqual(self.sequences, result)
