def test_json_for_saved_search(self):
search = VariantSearch.objects.first()
user = User.objects.filter(is_staff=True).first()
json = get_json_for_saved_search(search, user)
self.assertSetEqual(set(json.keys()), SAVED_SEARCH_FIELDS)
self.assertTrue('hgmd' in json['search']['pathogenicity'])
user = User.objects.filter(is_staff=False).first()
json = get_json_for_saved_search(search, user)
self.assertSetEqual(set(json.keys()), SAVED_SEARCH_FIELDS)
self.assertFalse('hgmd' in json['search']['pathogenicity'])
def test_json_for_saved_search(self):
search = VariantSearch.objects.first()
user = User.objects.get(username='******')
json = get_json_for_saved_search(search, user)
self.assertSetEqual(set(json.keys()), SAVED_SEARCH_FIELDS)
self.assertTrue('hgmd' in json['search']['pathogenicity'])
user = User.objects.get(username='******')
json = get_json_for_saved_search(search, user)
self.assertSetEqual(set(json.keys()), SAVED_SEARCH_FIELDS)
self.assertFalse('hgmd' in json['search']['pathogenicity'])
def test_json_for_saved_search(self):
search = VariantSearch.objects.first()
user = User.objects.filter(is_staff=True).first()
json = get_json_for_saved_search(search, user)
fields = {'savedSearchGuid', 'name', 'search'}
self.assertSetEqual(set(json.keys()), fields)
self.assertTrue('hgmd' in json['search']['pathogenicity'])
user = User.objects.filter(is_staff=False).first()
json = get_json_for_saved_search(search, user)
self.assertSetEqual(set(json.keys()), fields)
self.assertFalse('hgmd' in json['search']['pathogenicity'])
def test_json_for_saved_search(self):
search = VariantSearch.objects.first()
user = User.objects.filter(is_staff=True).first()
json = get_json_for_saved_search(search, user)
fields = {'savedSearchGuid', 'name', 'search'}
self.assertSetEqual(set(json.keys()), fields)
self.assertTrue('hgmd' in json['search']['pathogenicity'])
user = User.objects.filter(is_staff=False).first()
json = get_json_for_saved_search(search, user)
self.assertSetEqual(set(json.keys()), fields)
self.assertFalse('hgmd' in json['search']['pathogenicity'])
def create_saved_search_handler(request):
request_json = json.loads(request.body)
name = request_json.pop('name', None)
if not name:
return create_json_response({}, status=400, reason='"Name" is required')
if request_json.get('inheritance', {}).get('filter', {}).get('genotype'):
return create_json_response({}, status=400, reason='Saved searches cannot include custom genotype filters')
try:
saved_search, _ = VariantSearch.objects.get_or_create(
search=request_json,
created_by=request.user,
)
except MultipleObjectsReturned:
# Can't create a unique constraint on JSON field, so its possible that a duplicate gets made by accident
dup_searches = VariantSearch.objects.filter(
search=request_json,
created_by=request.user,
)
saved_search = dup_searches[0]
for search in dup_searches:
search.delete()
saved_search.name = name
saved_search.save()
return create_json_response({
'savedSearchesByGuid': {
saved_search.guid: get_json_for_saved_search(saved_search, request.user)
}
})
def create_saved_search_handler(request):
request_json = json.loads(request.body)
name = request_json.pop('name', None)
if not name:
return create_json_response({},
status=400,
reason='"Name" is required')
if request_json.get('inheritance', {}).get('filter', {}).get('genotype'):
return create_json_response(
{},
status=400,
reason='Saved searches cannot include custom genotype filters')
saved_search = VariantSearch.objects.create(
name=name,
search=request_json,
created_by=request.user,
)
return create_json_response({
'savedSearchesByGuid': {
saved_search.guid:
get_json_for_saved_search(saved_search, request.user)
}
})
def create_saved_search_handler(request):
request_json = json.loads(request.body)
name = request_json.pop('name', None)
if not name:
error = '"Name" is required'
return create_json_response({'error': error}, status=400, reason=error)
if (request_json.get('inheritance') or {}).get('filter', {}).get('genotype'):
error = 'Saved searches cannot include custom genotype filters'
return create_json_response({'error': error}, status=400, reason=error)
try:
saved_search, _ = get_or_create_model_from_json(
VariantSearch, {'search': request_json, 'created_by': request.user}, {'name': name}, request.user)
except MultipleObjectsReturned:
# Can't create a unique constraint on JSON field, so its possible that a duplicate gets made by accident
dup_searches = VariantSearch.objects.filter(
search=request_json,
created_by=request.user,
).order_by('created_date')
saved_search = dup_searches.first()
VariantSearch.bulk_delete(request.user, queryset=dup_searches.exclude(guid=saved_search.guid))
update_model_from_json(saved_search, {'name': name}, request.user)
except IntegrityError:
error = 'Saved search with name "{}" already exists'.format(name)
return create_json_response({'error': error}, status=400, reason=error)
return create_json_response({
'savedSearchesByGuid': {
saved_search.guid: get_json_for_saved_search(saved_search, request.user)
}
})
def update_saved_search_handler(request, saved_search_guid):
search = VariantSearch.objects.get(guid=saved_search_guid)
if search.created_by != request.user:
return create_json_response({}, status=403, reason='User does not have permission to edit this search')
request_json = json.loads(request.body)
name = request_json.pop('name', None)
if not name:
return create_json_response({}, status=400, reason='"Name" is required')
update_model_from_json(search, {'name': name}, request.user)
return create_json_response({
'savedSearchesByGuid': {
saved_search_guid: get_json_for_saved_search(search, request.user)
}
})
def update_saved_search_handler(request, saved_search_guid):
search = VariantSearch.objects.get(guid=saved_search_guid)
if search.created_by != request.user:
return create_json_response({}, status=403, reason='User does not have permission to edit this search')
request_json = json.loads(request.body)
name = request_json.pop('name', None)
if not name:
return create_json_response({}, status=400, reason='"Name" is required')
search.name = name
search.save()
return create_json_response({
'savedSearchesByGuid': {
saved_search_guid: get_json_for_saved_search(search, request.user)
}
})
def create_saved_search_handler(request):
request_json = json.loads(request.body)
name = request_json.pop('name', None)
if not name:
return create_json_response({},
status=400,
reason='"Name" is required')
saved_search = VariantSearch.objects.create(
name=name,
search=request_json,
created_by=request.user,
)
return create_json_response({
'savedSearchesByGuid': {
saved_search.guid:
get_json_for_saved_search(saved_search, request.user)
}
})
