def enrich():
log_cmd('Requested enrich', 'green')
ttl_file = request.files['ttl']
params_file = request.files['params']
prom = params_file.read()
params = json.loads(prom.decode('utf8'))
config = {
"input_file": ttl_file,
"link_type": params['kg'],
"predicate": params['pred'],
}
#ont, enr_stats, ont_stats, subs_data, ontology_summary = main(options, ont_query)
start = time.time()
enriched_ontology, ontology_stats, ontology_summary, enrichment_warns_num = main('options.json', config)
end = time.time()
enrichment_stats = get_enrichment_stats(ontology_summary)
result_dict = {
"enriched_ontology": enriched_ontology.decode('utf8'),
"enrichment_time": math.ceil(end - start),
"enrichment_warns_num": enrichment_warns_num,
"ontology_stats": ontology_stats,
"ontology_summary": ontology_summary,
"enrichment_stats": enrichment_stats,
}
#print(result_dict['ontology_summary']['https://w3id.org/i40/sto#IEC_42010']['added'])
return jsonify(result_dict)
def index():
"""Render result page."""
log_cmd('Requested result.index', 'green')
return render_template('result.html',
page_title='Result',
local_css='result.css',
)
def index():
"""Render upload page."""
log_cmd('Requested upload.index', 'green')
return render_template(
'upload.html',
page_title='Upload',
local_css='upload.css',
)
def index():
"""Render graph page."""
log_cmd('Requested graph.index', 'green')
return render_template('graph.html',
page_title='Graph',
local_css='graph.css',
#options = options,
)
def index():
"""Render validation page."""
log_cmd('Requested validation.index', 'green')
return render_template(
'validation.html',
page_title='Validation',
local_css='validation.css',
)
def index():
"""Render enrichment page."""
log_cmd('Requested enrichment.index', 'green')
return render_template(
'enrichment.html',
page_title='Enrichment',
local_css='enrichment.css',
)
def index():
"""Render overview page."""
log_cmd('Requested overview.index', 'green')
return render_template(
'overview.html',
page_title='Overview',
local_css='overview.css',
)
def index():
"""Render statistics page."""
log_cmd('Requested statistics.index', 'green')
return render_template(
'statistics.html',
page_title='Statistics',
local_css='statistics.css',
)
def index():
"""Render wheel page."""
log_cmd('Requested wheel.index', 'green')
#options = get_sto_subs()
return render_template(
'wheel.html',
page_title='Wheel',
local_css='wheel.css',
#options = options,
)
def upload_file():
""" """
log_cmd('Requested file upload', 'green')
current_path = os.path.dirname(os.path.abspath(__file__))
upload_folder = 'files'
upload_path = os.path.join(current_path, upload_folder)
file = request.files['file']
filename = secure_filename(file.filename) + str(int(time.time()))
file.save(os.path.join(upload_path, filename))
return jsonify({'filename': filename})
def get_graph_data():
""" """
log_cmd('Requested graph data', 'green')
enriched_ttl_file = request.files['enriched_ttl']
subs_data_file = request.files['subs_data']
prom_subs = subs_data_file.read()
subs_data = json.loads(prom_subs.decode('utf8'))
prefixes_file = request.files['prefixes']
prom_prefixes = prefixes_file.read()
prefixes = json.loads(prom_prefixes.decode('utf8'))
ont = Ontology(enriched_ttl_file, 'Enriched Ontology')
print('after')
#graph_data, flag = get_cy_data(ont, subs_data)
graph_data, flag = get_sigma_data(ont, subs_data, prefixes)
return jsonify({"graph_data": graph_data, "flag": flag})
def main():
"""Main entry point of the app."""
app = create_app()
logger = logging.getLogger(__name__)
try:
http_server = WSGIServer((CONFIG['host'], CONFIG['port']),
app,
log=logging,
error_log=logging)
log_text = 'Server is running on {}:{}'.format(CONFIG['host'],
CONFIG['port'])
log_cmd(log_text, 'green')
http_server.serve_forever()
except Exception as exc:
log_cmd('Error while launching the server', 'red')
logger.error(exc)
logger.exception(traceback.format_exc())
finally:
pass
def get_wheel_data():
""" """
log_cmd('Requested wheel data', 'green')
names = [
'sto:IEC_62541', 'rdf:type', 'dcterms:hasLicense',
'sto:hasClassification', 'sto:hasDeveloper', 'dcterms:subject',
'sto:hasDomain', 'sto:hasPublisher', 'sto:relatedTo',
'sto:useStructureOf', 'sto:hasDBpediaResource',
'sto:hasOfficialResource', 'sto:hasTag', 'sto:hasWikipediaArticle',
'dcterms:hasLicense', 'lingg:hypernym', 'rdfs:comment', 'rdfs:label'
]
colors = [
'gray', 'lightblue', 'lightgray', 'lightgray', 'lightgray',
'lightgreen', 'lightgray', 'lightgray', 'lightblue', 'lightgreen',
'lightsalmon', 'lightsalmon', 'lightgray', 'lightsalmon', 'lightgray',
'lightgreen', 'lightblue', 'lightgray'
]
mtx = np.zeros((len(names), len(names))).astype(int)
mtx[:, 0] = np.ones(len(names))
return jsonify({'mtx': mtx.tolist(), 'names': names, 'colors': colors})
def get_sto_properties():
""" """
log_cmd('Requested sto-properties', 'green')
return jsonify(sto_properties())
def get_standard_organizations():
""" """
log_cmd('Requested standard-organizations', 'green')
return jsonify(standard_organizations())
def get_standards():
""" """
log_cmd('Requested standards', 'green')
return jsonify(standards())
def get_enrichment_data():
""" """
log_cmd('Requested enrichment data', 'green')
return jsonify({})
def get_statistics_data():
""" """
log_cmd('Requested statistics data', 'green')
return jsonify({})
def template():
""" """
log_cmd('Requested SHACL template', 'green')
with open(os.path.join(STATIC_DIR, 'template.ttl'), 'r') as f:
template = f.read()
return template
