def lantern_check():
"""
Check any existing Lantern jobs
"""
if not app.config.get("ENABLE_LANTERN", False):
print "[{x}] Not checking Lantern jobs - interface disabled".format(x=dates.now())
return
print "[{x}] Checking Lantern jobs".format(x=dates.now())
LanternApi.check_jobs()
def lantern_jobs():
"""
Create any new jobs with Lantern that are requried
"""
if not app.config.get("ENABLE_LANTERN", False):
print "[{x}] Not sending Lantern jobs - interface disabled".format(x=dates.now())
return
print "[{x}] Sending Lantern jobs".format(x=dates.now())
LanternApi.make_new_jobs()
def test_03_batch(self):
# check that batches are created correctly
idents = [True] * 4444
batches = LanternApi._batch(idents)
assert len(batches) == 5
assert len(batches[0]) == 1000
assert len(batches[1]) == 1000
assert len(batches[2]) == 1000
assert len(batches[3]) == 1000
assert len(batches[4]) == 444
idents = [True] * 12
batches = LanternApi._batch(idents)
assert len(batches) == 1
assert len(batches[0]) == 12
def test_06_xwalk(self):
# Check the Lantern to Enhancement crosswalk
record = LanternFixtureFactory.record()
result = LanternFixtureFactory.xwalk_result()
enhancement = LanternApi._xwalk(record)
assert enhancement.data["record"] == result["record"]
def test_05_low_quota(self):
# Check what happens when the use has a low quota on Lantern
global QUOTA
QUOTA = 1
acc2 = MonitorUKAccount()
acc2.email = "*****@*****.**"
acc2.lantern_email = "*****@*****.**"
acc2.lantern_api_key = "123456789"
acc2.save()
# a record that needs lantern because of a missing field
source = PublicAPCFixtureFactory.make_record(acc2.id, None, None, None)
del source["admin"]["lantern_lookup"]
del source["record"]["rioxxterms:publication_date"]
pub = PublicAPC(source)
pub.save()
# a record that needs lantern because it has timed out and has a missing field
source = PublicAPCFixtureFactory.make_record(acc2.id, None, None, None)
source["admin"]["lantern_lookup"] = dates.format(dates.before_now(31104000)) # a year ago
del source["record"]["rioxxterms:publication_date"]
pub = PublicAPC(source)
pub.save(blocking=True)
LanternApi.make_new_jobs()
time.sleep(2)
dao = LanternJob()
jobs = [job for job in dao.iterall()]
assert len(jobs) == 1
assert len(CREATED_JOBS) == 1
job = CREATED_JOBS[0]
assert job["email"] == "*****@*****.**"
assert len(job["list"]) == 1
def test_02_get_identifiers(self):
# Check we get the right identifiers from an object
apc = {
"record" : {
"dc:identifier" : [
{"type" : "doi", "id" : "10.1"},
{"type" : "pmcid", "id" : "PMC1234"},
{"type" : "pmid", "id" : "1234"},
{"type" : "other", "id" : "whatever"}
]
}
}
pub = PublicAPC(apc)
idents = LanternApi._get_identifiers(pub)
assert idents["DOI"] == "10.1"
assert idents["PMCID"] == "PMC1234"
assert idents["PMID"] == "1234"
pub = PublicAPC()
idents = LanternApi._get_identifiers(pub)
assert idents is None
def test_07_check_jobs(self):
# Ensure that we can check existing jobs correctly
acc = MonitorUKAccount()
acc.email = "*****@*****.**"
acc.lantern_email = "*****@*****.**"
acc.lantern_api_key = "123456789"
acc.save()
lj1 = LanternJob()
lj1.job_id = "111111111"
lj1.account = acc.id
lj1.status = "complete"
lj1.save()
lj2 = LanternJob()
lj2.job_id = "222222222"
lj2.account = acc.id
lj2.status = "active"
lj2.last_updated = dates.format(dates.before_now(5000))
lj2.save(updated=False)
lj3 = LanternJob()
lj3.job_id = "333333333"
lj3.account = acc.id
lj3.status = "active"
lj3.last_updated = dates.format(dates.before_now(5000))
lj3.save(updated=False)
lj4 = LanternJob()
lj4.job_id = "444444444"
lj4.account = acc.id
lj4.status = "active"
lj4.last_updated = dates.format(dates.before_now(5000))
lj4.save(updated=False)
lj5 = LanternJob()
lj5.job_id = "555555555"
lj5.account = acc.id
lj5.status = "active"
lj5.save(blocking=True)
LanternApi.check_jobs()
# check that the progress requests we expected were made
assert len(PROGRESS_REQUESTS) == 3
assert "222222222" in PROGRESS_REQUESTS
assert "333333333" in PROGRESS_REQUESTS
assert "444444444" in PROGRESS_REQUESTS
# check that the job which received an error was just ignored
dao = LanternJob()
ignored = dao.pull(lj4.id)
assert ignored.last_updated == lj4.last_updated
assert ignored.status == "active"
# check that the record which was not complete was touched
touched = dao.pull(lj2.id)
assert touched.last_updated != lj2.last_updated
assert touched.status == "active"
# check that results were requested only for one item
assert len(RESULTS_REQUESTS) == 1
assert "333333333" in RESULTS_REQUESTS
# wait for a bit, so that enhancements have time to go in
time.sleep(2)
# check that an enhancement was registered
edao = Enhancement()
gen = edao.iterall()
enhancements = [e for e in gen]
assert len(enhancements) == 1
result = LanternFixtureFactory.xwalk_result()
assert enhancements[0].data["record"] == result["record"]
def test_04_create_job(self):
# Check we can create jobs correctly
acc1 = MonitorUKAccount()
acc1.email = "*****@*****.**"
acc1.save()
acc2 = MonitorUKAccount()
acc2.email = "*****@*****.**"
acc2.lantern_email = "*****@*****.**"
acc2.lantern_api_key = "123456789"
acc2.save()
acc3 = MonitorUKAccount()
acc3.email = "*****@*****.**"
acc3.lantern_email = "*****@*****.**"
acc3.lantern_api_key = "987654321"
acc3.save(blocking=True)
# a record which does not need lantern
source = PublicAPCFixtureFactory.make_record(acc2.id, None, None, None)
source["admin"]["lantern_lookup"] = dates.now()
pub = PublicAPC(source)
pub.save()
# a record that needs lantern because of a missing field
source = PublicAPCFixtureFactory.make_record(acc2.id, None, None, None)
del source["admin"]["lantern_lookup"]
del source["record"]["rioxxterms:publication_date"]
pub = PublicAPC(source)
pub.save()
# a record that needs lantern because it has timed out and has a missing field
source = PublicAPCFixtureFactory.make_record(acc2.id, None, None, None)
source["admin"]["lantern_lookup"] = dates.format(dates.before_now(31104000)) # a year ago
del source["record"]["rioxxterms:publication_date"]
pub = PublicAPC(source)
pub.save()
# a record that needs lantern but has no identifiers
source = PublicAPCFixtureFactory.make_record(acc2.id, None, None, None)
source["admin"]["lantern_lookup"] = dates.format(dates.before_now(31104000)) # a year ago
del source["record"]["rioxxterms:publication_date"]
del source["record"]["dc:identifier"]
pub = PublicAPC(source)
pub.save()
# a record which does not need lantern
source = PublicAPCFixtureFactory.make_record(acc3.id, None, None, None)
source["admin"]["lantern_lookup"] = dates.now()
pub = PublicAPC(source)
pub.save()
# a record that needs lantern because of a missing field
source = PublicAPCFixtureFactory.make_record(acc3.id, None, None, None)
del source["admin"]["lantern_lookup"]
del source["record"]["rioxxterms:publication_date"]
pub = PublicAPC(source)
pub.save()
# a record that needs lantern because it has timed out and has a missing field
source = PublicAPCFixtureFactory.make_record(acc3.id, None, None, None)
source["admin"]["lantern_lookup"] = dates.format(dates.before_now(31104000)) # a year ago
del source["record"]["rioxxterms:publication_date"]
pub = PublicAPC(source)
pub.save()
# a record that needs lantern but has no identifiers
source = PublicAPCFixtureFactory.make_record(acc3.id, None, None, None)
source["admin"]["lantern_lookup"] = dates.format(dates.before_now(31104000)) # a year ago
del source["record"]["rioxxterms:publication_date"]
del source["record"]["dc:identifier"]
pub = PublicAPC(source)
pub.save(blocking=True)
LanternApi.make_new_jobs()
time.sleep(2)
dao = LanternJob()
jobs = [job for job in dao.iterall()]
assert len(jobs) == 2
assert len(CREATED_JOBS) == 2
count = 0
for job in CREATED_JOBS:
if job["email"] == "*****@*****.**":
count += 1
assert len(job["list"]) == 2
elif job["email"] == "*****@*****.**":
count += 10
assert len(job["list"]) == 2
assert count == 11
# now do the same thing again. The jobs should not change, as we've already created jobs
# for all the public records
LanternApi.make_new_jobs()
time.sleep(2)
jobs = [job for job in dao.iterall()]
assert len(jobs) == 2
def test_01_needs_lantern(self):
# Check that we can tell when an object needs to be looked up in Lantern
apc = {
"record" : {
"rioxxterms:publication_date" : "2001-01-01",
"rioxxterms:version" : "AAM",
"dc:source" : {
"name" : "Journal Title",
"identifier" : [
{"type" : "issn", "id" : "XXXX-XXXX"}
],
"oa_type" : "hybrid",
"self_archiving" : {
"preprint" : {
"embargo" : 10,
"policy" : "can"
},
"postprint" : {
"embargo" : 20,
"policy" : "cannot"
},
"publisher" : {
"embargo" : 30,
"policy" : "maybe"
}
}
},
"rioxxterms:project" : [
{"funder_name" : "BBSRC"}
],
"ali:license_ref" : [
{ "type" : "CC BY" }
],
"jm:repository" : [
{"repo_name" : "arXiv"}
]
}
}
obj = PublicAPC(apc)
needs = LanternApi._needs_lantern_data(obj)
assert needs is False
clone = deepcopy(apc)
clone["record"]["rioxxterms:publication_date"] = ""
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
clone["record"]["rioxxterms:version"] = ""
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
clone["record"]["dc:source"]["name"] = ""
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
clone["record"]["dc:source"]["identifier"][0]["type"] = "other"
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
del clone["record"]["dc:source"]["oa_type"]
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
clone["record"]["dc:source"]["self_archiving"]["preprint"]["embargo"] = None
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
clone["record"]["dc:source"]["self_archiving"]["preprint"]["policy"] = None
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
clone["record"]["dc:source"]["self_archiving"]["postprint"]["embargo"] = None
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
clone["record"]["dc:source"]["self_archiving"]["postprint"]["policy"] = None
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
clone["record"]["dc:source"]["self_archiving"]["publisher"]["embargo"] = None
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
clone["record"]["dc:source"]["self_archiving"]["publisher"]["policy"] = None
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
del clone["record"]["rioxxterms:project"][0]["funder_name"]
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
del clone["record"]["ali:license_ref"][0]["type"]
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
clone = deepcopy(apc)
del clone["record"]["jm:repository"][0]["repo_name"]
cobj = PublicAPC(clone)
needs = LanternApi._needs_lantern_data(cobj)
assert needs is True
# now check that having a date cut-off works
apc = {
"admin" : {
"lantern_lookup" : dates.now()
}
}
obj = PublicAPC(apc)
needs = LanternApi._needs_lantern_data(obj)
assert needs is False
apc["admin"]["lantern_lookup"] = dates.format(dates.before_now(31104000)) # a year ago
obj = PublicAPC(apc)
needs = LanternApi._needs_lantern_data(obj)
assert needs is True