def run(self):
# Pass build_lib to the CMake builder as build_clib
build_clib = self.get_finalized_command('build_clib')
build_clib.build_clib = self.build_lib
build_clib.run()
# Invoke the actual Python build
build.run(self)
def run(self):
# Pass build_lib to the CMake builder as build_clib
build_clib = self.get_finalized_command('build_clib')
build_clib.build_clib = self.build_lib
build_clib.run()
# Invoke the actual Python build
build.run(self)
def run(self):
log.debug("running AmiciBuildCLib")
# Always force recompilation. The way setuptools/distutils check for
# whether sources require recompilation is not reliable and may lead
# to crashes or wrong results. We rather compile once too often...
self.force = True
build_clib.run(self)
def run(self):
# split the huge `training.c` file in small chunks with individual
# functions so that it can compile even on low-memory machines
lib = self.libraries[0]
training_file = next(s for s in lib.sources if os.path.basename(s) == "training.c")
training_temp = os.path.join(self.build_temp, "training")
self.make_file([training_file], training_temp, self.split_training_source, (training_file, training_temp))
# patch the library sources to use the split training files
lib.sources.remove(training_file)
lib.sources.extend(sorted(glob.glob(os.path.join(training_temp, "*.c"))))
# build the library as normal
_build_clib.run(self)
def run(self):
# make sure the C headers were generated already
if not self.distribution.have_run["configure"]:
self._configure_cmd.run()
# patch the `p7_hmmfile.c` so that we can use functions it otherwise
# declares as `static`
libhmmer = next(lib for lib in self.libraries if lib.name == "hmmer")
old = next(src for src in libhmmer.sources
if src.endswith("p7_hmmfile.c"))
new = os.path.join(self.build_temp, "p7_hmmfile.c")
self.make_file([old], new, self.patch_p7_hmmfile, (old, new))
libhmmer.sources.remove(old)
libhmmer.sources.append(new)
# build the libraries normally
_build_clib.run(self)