def upload(self, url, user, token, file, filetype='default'):
files = {}
files["file"] = (os.path.basename(file), open(file, 'rb'))
logger.debug("Message sent to shock on upload: %s" % files)
sclient = shock.Shock(url, user, token)
if filetype == 'contigs' or filetype == 'scaffolds':
res = sclient.upload_contigs(file)
else:
res = sclient.upload_file(file, filetype, curl=True)
return res
def upload(self, url, user, token, file, filetype='default'):
files = {}
files["file"] = (os.path.basename(file), open(file, 'rb'))
logging.debug("Message sent to shock on upload: %s" % files)
sclient = shock.Shock(url, user, token)
if filetype == 'default':
res = sclient.upload_misc(file, 'default')
elif filetype == 'contigs':
res = sclient.upload_contigs(file)
return res
def download_shock(self, url, user, token, node_id, outdir):
sclient = shock.Shock(url, user, token)
downloaded = sclient.curl_download_file(node_id, outdir=outdir)
return self.extract_file(downloaded)
def upload_file(self, url, user, token, file, filetype='default'):
files = {}
files["file"] = (os.path.basename(file), open(file, 'rb'))
sclient = shock.Shock(url, user, token)
res = sclient.upload_file(file, filetype, curl=True)
return res