def __init__(self, parent_view): HasErrorMessages.__init__(self) self.parent_view = parent_view self.username = None self.password = None
def __init__(self, parent_view):
HasErrorMessages.__init__(self)
self.parent_view = parent_view
self.username = None
self.password = None
def __init__(self, parent):
HasErrorMessages.__init__(self)
self.parent = parent
self.id = None
self.isEditing = False
self.clear()
def __init__(self, parent): HasErrorMessages.__init__(self) self.parent = parent self.id = None self.isEditing = False self.clear()
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) self.computations = None self.computationsStatus = None self.conts = None self.optims = None
def __init__(self, **kwargs):
TemplateView.__init__(self, **kwargs)
HasErrorMessages.__init__(self)
HasWorkingModel.__init__(self)
self.modelHistory = None
self.modelPublication = None
self.form = ModelAnnotationsForm(self)
def __init__(self, **kwargs):
TemplateView.__init__(self, **kwargs)
HasErrorMessages.__init__(self)
HasWorkingModel.__init__(self)
self.listOfVariables = None
self.listOfEvents = None
self.form = ModelEventsForm(self)
def __init__(self, parent): HasErrorMessages.__init__(self) self.parent = parent self.parameter = None self.fromValue = None self.toValue = None self.ds = None self.MaxSteps = None
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasWorkingProject.__init__(self) HasUserLoggedIn.__init__(self) HasErrorMessages.__init__(self) self.listOfModels = None self.fileUploadForm = DocumentForm()
def __init__(self, **kwargs):
TemplateView.__init__(self, **kwargs)
HasWorkingModel.__init__(self)
HasErrorMessages.__init__(self)
self.listOfCompartments = None
self.listOfUnits = None
self.form = ModelCompartmentsForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfVariables = None self.listOfEvents = None self.form = ModelEventsForm(self)
def __init__(self, **kwargs):
TemplateView.__init__(self, **kwargs)
HasWorkingProject.__init__(self)
HasUserLoggedIn.__init__(self)
HasErrorMessages.__init__(self)
self.listOfModels = None
self.fileUploadForm = DocumentForm()
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasWorkingModel.__init__(self) HasErrorMessages.__init__(self) self.listOfCompartments = None self.listOfUnits = None self.form = ModelCompartmentsForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.modelHistory = None self.modelPublication = None self.form = ModelAnnotationsForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasWorkingModel.__init__(self) HasErrorMessages.__init__(self) self.listOfConstants = None self.listOfVariables = None self.listComputations = None self.computation = None
def __init__(self, **kwargs):
TemplateView.__init__(self, **kwargs)
HasErrorMessages.__init__(self)
HasWorkingModel.__init__(self)
self.listOfParameters = None
self.listOfReactions = None
self.listOfUnits = None
self.form = ModelParametersForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfParameters = None self.listOfReactions = None self.listOfUnits = None self.form = ModelParametersForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasWorkingModel.__init__(self) HasErrorMessages.__init__(self) self.listOfConstants = None self.listComputations = None self.computation = None self.form = AnalyseBifurcationsForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfUnits = None self.listOfParameters = None self.sbmlLevels = None self.modelHistory = None self.modelPublication = None self.form = ModelMiscForm(self)
def __init__(self, parent_view):
HasErrorMessages.__init__(self)
self.parent_view = parent_view
self.username = None
self.firstname = None
self.lastname = None
self.email = None
self.organisation = None
self.password1 = None
self.password2 = None
def __init__(self, **kwargs):
TemplateView.__init__(self, **kwargs)
HasErrorMessages.__init__(self)
HasWorkingModel.__init__(self)
self.listOfUnits = None
self.listOfParameters = None
self.sbmlLevels = None
self.modelHistory = None
self.modelPublication = None
self.form = ModelMiscForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfVariables = None self.listOfRules = None self.ruleTypes = ["Algebraic rule", "Assignment rule", "Rate rule", "Initial assignment"] self.form = ModelRulesForm(self)
def __init__(self, **kwargs):
TemplateView.__init__(self, **kwargs)
HasErrorMessages.__init__(self)
HasWorkingModel.__init__(self)
self.listOfVariables = None
self.listOfRules = None
self.ruleTypes = [
"Algebraic rule", "Assignment rule", "Rate rule",
"Initial assignment"
]
self.form = ModelRulesForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfReactions = None self.listOfSpecies = None self.listOfParameters = None self.listOfKineticLaws = None self.reactionTypes = KineticLaw.reactionTypes self.parametersList = KineticLaw.parametersList self.allowReversibleList = KineticLaw.allowReversibleList self.form = ModelReactionsForm(self)
def __init__(self, **kwargs):
TemplateView.__init__(self, **kwargs)
HasErrorMessages.__init__(self)
HasWorkingModel.__init__(self)
self.listOfReactions = None
self.listOfSpecies = None
self.listOfParameters = None
self.listOfKineticLaws = None
self.reactionTypes = KineticLaw.reactionTypes
self.parametersList = KineticLaw.parametersList
self.allowReversibleList = KineticLaw.allowReversibleList
self.form = ModelReactionsForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) # "email_address": "*****@*****.**", # "email_use_tls": true, # "email_host": "smtp.gmail.com", # "email_port": "587", # "email_user": "******", # "email_password": "******", self.mailAddress = None self.mailUseTLS = None self.mailHost = None self.mailPort = None self.mailUser = None
def __init__(self, parent_view):
HasErrorMessages.__init__(self)
self.parent_view = parent_view
self.selectedSpeciesIds = None
self.selectedReactionsIds = None
# self.experimentId = None
self.timeMin = None
# self.timeEch = None
self.timeMax = None
# self.showObservations = None
self.steady_states = []
self.speciesId = None
def __init__(self, **kwargs):
TemplateView.__init__(self, **kwargs)
HasErrorMessages.__init__(self)
# "email_address": "*****@*****.**",
# "email_use_tls": true,
# "email_host": "smtp.gmail.com",
# "email_port": "587",
# "email_user": "******",
# "email_password": "******",
self.mailAddress = None
self.mailUseTLS = None
self.mailHost = None
self.mailPort = None
self.mailUser = None
def __init__(self, parent_view): HasErrorMessages.__init__(self) self.parent_view = parent_view self.simulationName = None self.simulationModelSnapshot = None self.selectedSpeciesIds = None self.selectedReactionsIds = None # self.timeMin = None self.timeMax = None self.steady_states_str = None self.steady_states = [] self.speciesId = None self.speciesName = None
def __init__(self, parent_view): HasErrorMessages.__init__(self) self.parent_view = parent_view self.simulationName = None self.simulationModelSnapshot = None self.selectedSpeciesIds = None self.selectedReactionsIds = None self.experimentId = None self.timeMin = None self.timeEch = None self.timeMax = None self.showObservations = None
def __init__(self, parent_view):
HasErrorMessages.__init__(self)
self.parent_view = parent_view
self.simulationName = None
self.simulationModelSnapshot = None
self.selectedSpeciesIds = None
self.selectedReactionsIds = None
self.experimentId = None
self.timeMin = None
self.timeEch = None
self.timeMax = None
self.showObservations = None
def __init__(self, **kwargs):
TemplateView.__init__(self, **kwargs)
HasErrorMessages.__init__(self)
HasWorkingModel.__init__(self)
self.listOfSubmodels = []
self.listOfSubmodelTypes = []
self.listOfSubstitutions = None
self.listOfProjectModels = None
self.listOfSubmodelsRefs = None
self.listOfObjects = None
self.listOfObjectsMetaIds = None
self.listOfConversionFactors = None
self.form = ModelSubmodelsForm(self)
self.formSubstitutions = ModelSubmodelSubstitutionForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfSubmodels = [] self.listOfSubmodelTypes = [] self.listOfSubstitutions = None self.listOfProjectModels = None self.listOfSubmodelsRefs = None self.listOfObjects = None self.listOfObjectsMetaIds = None self.listOfConversionFactors = None self.form = ModelSubmodelsForm(self) self.formSubstitutions = ModelSubmodelSubstitutionForm(self)
def __init__(self, view): HasErrorMessages.__init__(self) self.view = view self.selectedDataSetsIds = None self.selectedExperiments = None self.speciesMapping = None self.selectedParameters = None self.nbCores = 2 self.plsaLambda = Settings.defaultPlsaLambda self.plsaCriterion = Settings.defaultPlsaCriterion self.plsaPrecision = Settings.defaultPlsaPrecision self.plsaInitialTemperature = Settings.defaultPlsaInitialTemperature self.plsaInitialMoves = Settings.defaultPlsaInitialMoves self.plsaFreezeCount = Settings.defaultPlsaFreezeCount self.scoreNegativePenalty = Settings.defaultScoreNegativePenalty self.mappings = []
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasWorkingProject.__init__(self) HasErrorMessages.__init__(self) self.listOfPlots2D = None
def __init__(self, **kwargs):
TemplateView.__init__(self, **kwargs)
HasWorkingProject.__init__(self)
HasErrorMessages.__init__(self)
self.listOfPlots2D = None
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self)
