def generate_cuds(self):
pset1 = create_particles_with_id(restrict=[CUBA.VELOCITY])
for p in pset1:
p.data[CUBA.MATERIAL_TYPE] = 1
pset2 = create_particles_with_id(restrict=[CUBA.VELOCITY])
for p in pset2:
p.data[CUBA.MATERIAL_TYPE] = 1
ps1 = Particles('ps1')
ps2 = Particles('ps2')
ps1.add(pset1)
ps2.add(pset2)
c = CUDS()
c.add([ps2])
mat = api.Material()
mat.data[CUBA.MASS] = 1.0
c.add([mat])
box = api.Box()
c.add([box])
return c
def test_compare_particles_datasets_not_equal(self):
# given
particles = Particles(name="test")
reference = Particles(name="test_ref")
particle_list = create_particles_with_id()
bond_list = create_bonds()
data = create_data_container()
particles.add_particles(particle_list)
reference.add_particles(particle_list)
particles.add_bonds(bond_list)
reference.add_bonds(bond_list)
particles.data = data
reference.data = data
# when/then
with self.assertRaises(AssertionError):
compare_particles_datasets(particles, reference, testcase=self)
# given
test_particles = create_particles_with_id()
particles = Particles(name=reference.name)
particles.add_particles(test_particles)
particles.add_bonds(bond_list)
particles.data = data
# when/then
with self.assertRaises(AssertionError):
compare_particles_datasets(particles, reference, testcase=self)
# given
test_bonds = create_bonds()
particles = Particles(name=reference.name)
particles.add_particles(particle_list)
particles.add_bonds(test_bonds)
particles.data = data
# when/then
with self.assertRaises(AssertionError):
compare_particles_datasets(particles, reference, testcase=self)
# given
test_data = DataContainer()
particles = Particles(name=reference.name)
particles.add_particles(particle_list)
particles.add_bonds(bond_list)
particles.data = test_data
# when/then
with self.assertRaises(AssertionError):
compare_particles_datasets(particles, reference, testcase=self)
def test_compare_particles_datasets_not_equal(self):
# given
particles = Particles(name="test")
reference = Particles(name="test_ref")
particle_list = create_particles_with_id()
bond_list = create_bonds()
data = create_data_container()
particles.add(particle_list)
reference.add(particle_list)
particles.add(bond_list)
reference.add(bond_list)
particles.data = data
reference.data = data
# when/then
with self.assertRaises(AssertionError):
compare_particles_datasets(particles, reference, testcase=self)
# given
test_particles = create_particles_with_id()
particles = Particles(name=reference.name)
particles.add(test_particles)
particles.add(bond_list)
particles.data = data
# when/then
with self.assertRaises(AssertionError):
compare_particles_datasets(particles, reference, testcase=self)
# given
test_bonds = create_bonds()
particles = Particles(name=reference.name)
particles.add(particle_list)
particles.add(test_bonds)
particles.data = data
# when/then
with self.assertRaises(AssertionError):
compare_particles_datasets(particles, reference, testcase=self)
# given
test_data = DataContainer()
particles = Particles(name=reference.name)
particles.add(particle_list)
particles.add(bond_list)
particles.data = test_data
# when/then
with self.assertRaises(AssertionError):
compare_particles_datasets(particles, reference, testcase=self)
def test_compare_mesh_datasets_equal(self):
# given
mesh = Mesh(name="test")
reference = Mesh(name="test")
point_list = create_particles_with_id()
edge_list = create_edges()
face_list = create_faces()
cell_list = create_cells()
data = DataContainer()
mesh.add_points(point_list)
mesh.add_edges(edge_list)
mesh.add_faces(face_list)
mesh.add_cells(cell_list)
reference.add_points(point_list)
reference.add_edges(edge_list)
reference.add_faces(face_list)
reference.add_cells(cell_list)
mesh.data = data
reference.data = data
# this should pass without problems
compare_mesh_datasets(mesh, reference, testcase=self)
def test_create_particles_with_id(self):
particles = create_particles_with_id(n=9)
self.assertEqual(len(particles), 9)
for index, particle in enumerate(particles):
self.assertIsInstance(particle, Particle)
self.assertIsNotNone(particle.uid)
self.assertEqual(
particle.coordinates, (index, index*10, index*100))
compare_data_containers(
particle.data, create_data_container(),
testcase=self)
def test_create_particles_with_id(self):
particles = create_particles_with_id(n=9)
self.assertEqual(len(particles), 9)
for index, particle in enumerate(particles):
self.assertIsInstance(particle, Particle)
self.assertIsNotNone(particle.uid)
self.assertEqual(particle.coordinates,
(index, index * 10, index * 100))
compare_data_containers(particle.data,
create_data_container(),
testcase=self)
def test_add_multiple_particles_with_id(self):
# given
container = self.container
particles = create_particles_with_id(restrict=self.supported_cuba())
# when
uids = container.add_particles(particles)
# then
for particle in particles:
uid = particle.uid
self.assertIn(uid, uids)
self.assertTrue(container.has_particle(uid))
self.assertEqual(container.get_particle(uid), particle)
def test_exception_when_removing_multiple_particles_with_bad_id(self):
# given
container = self.container
particles = create_particles_with_id()
uids = [p.uid for p in particles]
# then
with self.assertRaises(KeyError):
# when
container.remove_particles(uids)
# then
with self.assertRaises(KeyError):
# when
container.remove_particles([None])
def test_exception_when_update_multiple_particles_when_wrong_id(self):
# given
container = self.container
particles = create_particles()
# then
with self.assertRaises(ValueError):
# when
container.update_particles(particles)
# given
particles = create_particles_with_id()
# then
with self.assertRaises(ValueError):
# when
container.update_particles(particles)
def test_compare_particles_datasets_equal(self):
# given
particles = Particles(name="test")
reference = Particles(name="test")
particle_list = create_particles_with_id()
bond_list = create_bonds()
data = DataContainer()
particles.add_particles(particle_list)
reference.add_particles(particle_list)
particles.add_bonds(bond_list)
reference.add_bonds(bond_list)
particles.data = data
reference.data = data
# this should pass without problems
compare_particles_datasets(particles, reference, testcase=self)
def test_compare_particles_datasets_equal(self):
# given
particles = Particles(name="test")
reference = Particles(name="test")
particle_list = create_particles_with_id()
bond_list = create_bonds()
data = DataContainer()
particles.add(particle_list)
reference.add(particle_list)
particles.add(bond_list)
reference.add(bond_list)
particles.data = data
reference.data = data
# this should pass without problems
compare_particles_datasets(particles, reference, testcase=self)
def test_add_multiple_particles_with_id(self):
# given
container = self.container
particles = create_particles_with_id(restrict=self.supported_cuba())
# TODO. This ia fix so particles have the right attributes
# for lammps (MD)
material = self.configurator.materials[0]
for p in particles:
p.data[CUBA.MATERIAL_TYPE] = material.uid
# when
uids = container.add(particles)
# then
for particle in particles:
uid = particle.uid
self.assertIn(uid, uids)
self.assertTrue(container.has(uid))
self.assertEqual(container.get(uid), particle)
def test_compare_mesh_datasets_not_equal(self):
# given
mesh = Mesh(name="test")
reference = Mesh(name="test_ref")
point_list = create_particles_with_id()
edge_list = create_edges()
face_list = create_faces()
cell_list = create_cells()
data = create_data_container()
mesh.add_points(point_list)
mesh.add_edges(edge_list)
mesh.add_faces(face_list)
mesh.add_cells(cell_list)
reference.add_points(point_list)
reference.add_edges(edge_list)
reference.add_faces(face_list)
reference.add_cells(cell_list)
mesh.data = data
reference.data = data
# when/then
with self.assertRaises(AssertionError):
compare_mesh_datasets(mesh, reference, testcase=self)
# given
test_points = create_points_with_id()
mesh = Mesh(name=reference.name)
mesh.add_points(test_points)
mesh.add_edges(edge_list)
mesh.add_faces(face_list)
mesh.add_cells(cell_list)
mesh.data = data
# when/then
with self.assertRaises(AssertionError):
compare_mesh_datasets(mesh, reference, testcase=self)
# given
test_edges = create_edges()
mesh = Mesh(name=reference.name)
mesh.add_points(point_list)
mesh.add_edges(test_edges)
mesh.add_faces(face_list)
mesh.add_cells(cell_list)
mesh.data = data
# when/then
with self.assertRaises(AssertionError):
compare_mesh_datasets(mesh, reference, testcase=self)
# given
test_faces = create_faces()
mesh = Mesh(name=reference.name)
mesh.add_points(point_list)
mesh.add_edges(edge_list)
mesh.add_faces(test_faces)
mesh.add_cells(cell_list)
mesh.data = data
# when/then
with self.assertRaises(AssertionError):
compare_mesh_datasets(mesh, reference, testcase=self)
# given
test_cells = create_cells()
mesh = Mesh(name=reference.name)
mesh.add_points(point_list)
mesh.add_edges(edge_list)
mesh.add_faces(face_list)
mesh.add_cells(test_cells)
mesh.data = data
# when/then
with self.assertRaises(AssertionError):
compare_mesh_datasets(mesh, reference, testcase=self)
# given
test_data = DataContainer()
mesh = Mesh(name=reference.name)
mesh.add_points(point_list)
mesh.add_edges(edge_list)
mesh.add_faces(face_list)
mesh.add_cells(cell_list)
mesh.data = test_data
# when/then
with self.assertRaises(AssertionError):
compare_mesh_datasets(mesh, reference, testcase=self)