#!/usr/bin/env python
# vim: fdm=indent
'''
author: Fabio Zanini
date: 15/08/17
content: Test CountsTable class.
'''
# Script
if __name__ == '__main__':
# NOTE: an env variable for the config file needs to be set when
# calling this script
from singlet.counts_table import CountsTable
ct = CountsTable.from_tablename('example_table_tsv')
print('Test binning of CountsTable')
ct = ct.iloc[:200]
ct.bin(result='index', inplace=True)
assert (ct.values.max() == 4)
print('Done!')
def ct():
from singlet.counts_table import CountsTable
return CountsTable.from_tablename('example_table_tsv').iloc[:200]
def test_initialize():
from singlet.counts_table import CountsTable
ct = CountsTable.from_tablename('example_table_tsv')