def test_parse_googleapi():
from singlet.io import parse_samplesheet
print('Parsing example Google Drive API sample sheet')
table = parse_samplesheet({'sheetname': 'example_sheet_googleapi'})
print('Done!')
#!/usr/bin/env python
# vim: fdm=indent
'''
author: Fabio Zanini
date: 07/08/17
content: Test CSV/TSV parser for sample sheets.
'''
# Script
if __name__ == '__main__':
# NOTE: an env variable for the config file needs to be set when
# calling this script
from singlet.io import parse_samplesheet
print('Parsing example TSV sample sheet')
table = parse_samplesheet('example_sheet_tsv')
#TODO: check it's correct
print('Done!')
def test_parse_samplesheet_tsv():
from singlet.io import parse_samplesheet
table = parse_samplesheet({'sheetname': 'example_sheet_tsv'})
def test_parse_samplesheet():
from singlet.io import parse_samplesheet
print('Parsing example sample sheet')
table = parse_samplesheet({'sheetname': 'example_sheet_tsv'})
print('Done!')
def test_parse_samplesheet():
print('Parsing example TSV count table from dataset')
from singlet.io import parse_samplesheet
table = parse_samplesheet({'datasetname': 'example_dataset'})
print('Done!')