def loop_html(thefile):
reader = csv.reader(thefile.file.read().splitlines())
header = reader.next()
# logger.info(header)
i=0
iter_html=""
for row in reader:
job_q.put([row, i])
i=i+1
all_threads = [Thread(target=html_table, args=(job_q, )) for j in range(thread_count)]
for x in all_threads:
x.start()
for x in all_threads:
job_q.put(None)
for x in all_threads:
x.join()
html_timestamp = sip_tables.timestamp("", jid_batch[0])
out_html_all_sort = OrderedDict(sorted(out_html_all.items()))
sum_html = sip_tables.table_all_sum(sip_tables.sumheadings, sip_tables.tmpl, bw_quail,bw_duck,bwb_other,bw_rat,bwm_other,sol,
avian_ld50,mammalian_ld50,aw_bird,mineau,aw_mamm,noaec,noael,
dose_bird_out, dose_mamm_out, at_bird_out,
at_mamm_out, det_out, act_out, acute_bird_out, acute_mamm_out,
chron_bird_out, chron_mamm_out)
return html_timestamp + sum_html + "".join(out_html_all_sort.values())
def get(self):
templatepath = os.path.dirname(__file__) + '/../templates/'
ChkCookie = self.request.cookies.get("ubercookie")
html = uber_lib.SkinChk(ChkCookie, "SIP QA/QC")
html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'sip','page':'qaqc'})
html = html + template.render (templatepath + '03ubertext_links_left.html', {})
html = html + template.render(templatepath + '04uberoutput_start.html', {
'model':'sip',
'model_attributes':'SIP QAQC'})
html = html + sip_tables.timestamp(sip_obj)
html = html + sip_tables.table_all_qaqc(sip_obj)
html = html + template.render(templatepath + 'export.html', {})
html = html + template.render(templatepath + '04uberoutput_end.html', {'sub_title': ''})
html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
rest_funcs.save_dic(html, sip_obj.__dict__, 'sip', 'qaqc')
self.response.out.write(html)
def post(self):
form = cgi.FieldStorage()
chemical_name = form.getvalue('chemical_name')
# select_receptor = form.getvalue('select_receptor')
# bw_bird = form.getvalue('body_weight_of_bird')
# bw_mamm = form.getvalue('body_weight_of_mammal')
sol = form.getvalue('solubility')
ld50_a = form.getvalue('ld50_a')
ld50_m = form.getvalue('ld50_m')
aw_bird = form.getvalue('aw_bird')
# tw_bird = form.getvalue('body_weight_of_the_tested_bird')
aw_mamm = form.getvalue('aw_mamm')
# tw_mamm = form.getvalue('body_weight_of_the_tested_mammal')
mineau = form.getvalue('mineau_scaling_factor')
noael = form.getvalue('NOAEL')
noaec_d = form.getvalue('NOAEC_d')
noaec_q = form.getvalue('NOAEC_q')
noaec_o = form.getvalue('NOAEC_o')
# noaec_o2 = form.getvalue('NOAEC_o2')
Species_of_the_bird_NOAEC_CHOICES = form.getvalue('NOAEC_species')
bw_quail = form.getvalue('bw_quail')
bw_duck = form.getvalue('bw_duck')
bwb_other = form.getvalue('bwb_other')
bw_rat = form.getvalue('bw_rat')
bwm_other = form.getvalue('bwm_other')
b_species = form.getvalue('b_species')
m_species = form.getvalue('m_species')
sip_obj = sip_model.sip(True,True,'single',chemical_name, b_species, m_species, bw_quail, bw_duck, bwb_other, bw_rat, bwm_other, sol, ld50_a, ld50_m, aw_bird, mineau, aw_mamm, noaec_d, noaec_q, noaec_o, Species_of_the_bird_NOAEC_CHOICES, noael)
text_file = open('sip/sip_description.txt','r')
x = text_file.read()
templatepath = os.path.dirname(__file__) + '/../templates/'
ChkCookie = self.request.cookies.get("ubercookie")
html = uber_lib.SkinChk(ChkCookie, "SIP Output")
html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'sip','page':'output'})
html = html + template.render (templatepath + '03ubertext_links_left.html', {})
html = html + template.render(templatepath + '04uberoutput_start.html', {
'model':'sip',
'model_attributes':'SIP Output'})
html = html + sip_tables.timestamp(sip_obj)
html = html + sip_tables.table_all(sip_obj)
html = html + template.render(templatepath + 'export.html', {})
html = html + template.render(templatepath + '04uberoutput_end.html', {})
html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
rest_funcs.save_dic(html, sip_obj.__dict__, "sip", "single")
self.response.out.write(html)
