def test_genbank_to_rna(self):
seq, md, imd, constructor = self.single_rna
obs = _genbank_to_rna(self.single_rna_fp)
exp = constructor(seq, metadata=md,
lowercase=True, interval_metadata=imd)
self.assertEqual(exp, obs)
def test_genbank_to_rna(self):
seq, md, pmd, constructor = self.single_rna
obs = _genbank_to_rna(self.single_rna_fp)
exp = constructor(seq,
metadata=md,
lowercase=True,
positional_metadata=pmd)
self.assertEqual(exp, obs)
def test_roundtrip_rna(self):
with io.StringIO() as fh:
_rna_to_genbank(_genbank_to_rna(self.single_rna_fp), fh)
obs = fh.getvalue()
with open(self.single_rna_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)
def test_roundtrip_rna(self):
with io.StringIO() as fh:
_rna_to_genbank(_genbank_to_rna(self.single_rna_fp), fh)
obs = fh.getvalue()
with open(self.single_rna_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)
