def test_parse_locus_invalid(self):
lines = [
# missing unit
["LOCUS NC_005816 9609 " " DNA circular CON 07-FEB-2015"],
# missing division
["LOCUS SCU49845 5028 bp" " DNA 21-JUN-1999"],
# wrong date format
["LOCUS NP_001832 360 aa" " linear PRI 2001-12-18"],
]
for line in lines:
with six.assertRaisesRegex(self, GenBankFormatError, "Could not parse the LOCUS line:.*"):
_parse_locus(line)
def test_parse_locus_invalid(self):
lines = [
# missing unit
['LOCUS NC_005816 9609 '
' DNA circular CON 07-FEB-2015'],
# missing division
['LOCUS SCU49845 5028 bp'
' DNA 21-JUN-1999'],
# wrong date format
['LOCUS NP_001832 360 aa'
' linear PRI 2001-12-18']]
for line in lines:
with self.assertRaisesRegex(GenBankFormatError,
r'Could not parse the LOCUS line:.*'):
_parse_locus(line)
def test_parse_locus_invalid(self):
lines = [
# missing unit
['LOCUS NC_005816 9609 '
' DNA circular CON 07-FEB-2015'],
# missing division
['LOCUS SCU49845 5028 bp'
' DNA 21-JUN-1999'],
# wrong date format
['LOCUS NP_001832 360 aa'
' linear PRI 2001-12-18']]
for line in lines:
with self.assertRaisesRegex(GenBankFormatError,
'Could not parse the LOCUS line:.*'):
_parse_locus(line)
def test_parse_locus(self):
for serialized, parsed in self.locus:
self.assertEqual(_parse_locus(serialized), parsed)
def test_parse_locus(self):
for serialized, parsed in self.locus:
self.assertEqual(_parse_locus(serialized), parsed)