def test_degap(self): """degap functions as expected """ expected = [(id_, seq.replace(".", "").replace("-", "")) for id_, seq in self.seqs1_t] expected = SequenceCollection.from_fasta_records(expected, DNASequence) actual = self.a1.degap() self.assertEqual(actual, expected) expected = [(id_, seq.replace(".", "").replace("-", "")) for id_, seq in self.seqs2_t] expected = SequenceCollection.from_fasta_records(expected, RNASequence) actual = self.a2.degap() self.assertEqual(actual, expected)
def test_degap(self): expected = [(id_, seq.replace('.', '').replace('-', '')) for id_, seq in self.seqs1_t] expected = SequenceCollection.from_fasta_records(expected, DNASequence) actual = self.a1.degap() self.assertEqual(actual, expected) expected = [(id_, seq.replace('.', '').replace('-', '')) for id_, seq in self.seqs2_t] expected = SequenceCollection.from_fasta_records(expected, RNASequence) actual = self.a2.degap() self.assertEqual(actual, expected)
def test_from_fasta_records(self): """Initialization from list of tuples functions as expected """ SequenceCollection.from_fasta_records(self.seqs1_t, DNASequence) SequenceCollection.from_fasta_records(self.seqs2_t, RNASequence) SequenceCollection.from_fasta_records(self.seqs3_t, NucleotideSequence)
def test_from_fasta_records(self): """Initialization from list of tuples functions as expected """ SequenceCollection.from_fasta_records(self.seqs1_t, DNASequence) SequenceCollection.from_fasta_records(self.seqs2_t, RNASequence) SequenceCollection.from_fasta_records(self.seqs3_t, NucleotideSequence)
def test_from_fasta_records(self): SequenceCollection.from_fasta_records(self.seqs1_t, DNASequence) SequenceCollection.from_fasta_records(self.seqs2_t, RNASequence) SequenceCollection.from_fasta_records(self.seqs3_t, NucleotideSequence)