def write_h5(arr, path, group="stack", print_top_image=True, dry=False):
arr += 1
print "Writing stack with shape %s to %s" % (str(arr.shape), path)
ensure_file(path)
if not dry:
imio.write_h5_stack(arr, path, group=group, compression="lzf")
if not print_top_image: return
top_im = arr[0,:,:][np.newaxis,:,:]
colors = h5topng.build_color_map(top_im,"random")
h5topng.output_pngs(top_im, colors, path+"-top-")
def write_h5(arr, path, group):
print "Writing stack with shape %s to %s" % (str(arr.shape), path)
ensure_file(path)
imio.write_h5_stack(arr, path, group=group, compression="lzf")