def setUp(self):
env.reset()
if not os.path.isdir('temp'):
os.mkdir('temp')
with open('temp/script1.sos', 'w') as script:
script.write('''
[0]
seq = range(3)
input: for_each='seq'
output: "test${_seq}.txt"
print(output)
''')
with open('temp/script2.sos', 'w') as script:
# with tab after run:
script.write('''
[0]
seq = range(3)
input: for_each='seq'
output: "test${_seq}.txt"
run: concurrent=True
echo 'this is test script'
[10]
report('this is action report')
''')
self.scripts = ['temp/script1.sos', 'temp/script2.sos']
def setUp(self):
env.reset()
subprocess.call('sos remove -s', shell=True)
#self.resetDir('~/.sos')
self.temp_files = []
self.resetDir('temp')
Host.reset()
def setUp(self):
env.reset()
#self.resetDir('~/.sos')
self.temp_files = []
Host.reset()
# remove .status file left by failed workflows.
subprocess.call('sos purge', shell=True)
def setUp(self):
env.reset()
if not os.path.isdir('temp'):
os.mkdir('temp')
with open('temp/script1.sos', 'w') as script:
script.write('''
[0]
seq = range(3)
input: for_each='seq'
output: "test${_seq}.txt"
print(output)
''')
with open('temp/script2.sos', 'w') as script:
# with tab after run:
script.write('''
[0]
seq = range(3)
input: for_each='seq'
output: "test${_seq}.txt"
run: concurrent=True
echo 'this is test script'
[10]
report('this is action report')
''')
self.scripts = ['temp/script1.sos', 'temp/script2.sos']
def setUp(self):
env.reset()
self.olddir = os.getcwd()
file_dir = os.path.split(__file__)[0]
if file_dir:
os.chdir(file_dir)
if not os.path.isdir('temp'):
os.mkdir('temp')
with open('temp/script1.sos', 'w') as script:
script.write('''
[0]
seq = range(3)
input: for_each='seq'
output: 'test${_seq}.txt'
print(output)
''')
with open('temp/script2.sos', 'w') as script:
# with tab after run:
script.write('''
#! This is supposed to be a markdown
#! cell
[0]
seq = range(3)
input: for_each='seq'
output: 'test${_seq}.txt'
run: concurrent=True
echo 'this is test script'
[10]
report('this is action report')
''')
self.scripts = ['temp/script1.sos', 'temp/script2.sos']
def testWorkflowDict(self):
"""Test workflow dict with attribute access"""
env.reset()
d = WorkflowDict()
d["a"] = 1
self.assertEqual(d["a"], 1)
#
d["a"] += 1
self.assertEqual(d["a"], 2)
def testWorkflowDict(self):
'''Test workflow dict with attribute access'''
env.reset()
d = WorkflowDict()
d['a'] = 1
self.assertEqual(d['a'], 1)
#
d['a'] += 1
self.assertEqual(d['a'], 2)
def setUp(self):
self.olddir = os.getcwd()
try:
# this only works with nose, but is also
# only needed by nose
os.chdir(os.path.dirname(__file__))
except Exception:
pass
env.reset()
self.temp_files = []
def setUp(self):
self.olddir = os.getcwd()
try:
# this only works with nose, but is also
# only needed by nose
os.chdir(os.path.dirname(__file__))
except:
pass
env.reset()
self.temp_files = []
def setUp(self):
env.reset()
self.temp_files = []
def setUp(self):
env.reset()
def setUp(self):
env.reset()
subprocess.call('sos remove -s', shell=True)
self.temp_files = []
def setUp(self):
env.reset()
def setUp(self):
env.reset()
self.temp_files = []
def setUp(self):
env.reset()
self.temp_files = []
subprocess.call('redis-server &', shell=True)
subprocess.call('rq worker &', shell=True)
def setUp(self):
env.reset()
self.temp_files = []
subprocess.call('redis-server &', shell=True)
subprocess.call('rq worker &', shell=True)
def setUp(self):
env.reset()
subprocess.call("sos remove -s", shell=True)
# self.resetDir('~/.sos')
self.temp_files = []
