def harvest_atoms(self):
ls_atoms = os.listdir("%s/run"%(VAR_PATH) )
self.harvested_atoms = len(ls_atoms)
for i_d in ls_atoms:
pd = ParameterAtom(i_d)
try:
pd.load(src = 'run')
except:
utils.newline_msg("WRN", "could not pickle '%s'...skipping"%i_d, 2)
continue
a_db =self.result_dbs[pd.full_db_name]
pd.dump_result_in_ensemble( a_db )
def seed_atoms(self, queue_name):
self.seeded_atoms = self.max_atoms_to_seed - len(os.listdir("%s/queue/%s"%(VAR_PATH,queue_name) ) )
# utils.newline_msg("INF", "initialise_infiles - %d"%to_run_processes )
# print "inti"
self.update_ensemble_list()
for i_atom in range(self.seeded_atoms):
sel_db = self.pick_ensemble( queue_name )
# utils.newline_msg("INF", " >> %s/%s"%(sel_db.path,sel_db.db_name) )
# sel_db.next()
(self.current_counter, ) = self.execute_query_fetchone("SELECT last FROM infiles WHERE id = 1")
self.current_counter += 1
self.execute_query("UPDATE infiles SET last = ? WHERE id = 1", self.current_counter )
# self.db_master.commit()
in_name = "in_%.10d"%self.current_counter
pd = ParameterAtom(in_name, sel_db.full_name)
ret = pd.load_next_from_ensemble( sel_db )
if ret == None:
continue
pd.dump(src = "queue/%s"%queue_name)
