def __init__(self,
tau_m=20.0,
cm=1.0,
v_rest=-65.0,
v_reset=-65.0,
v_thresh=-50.0,
tau_syn_E=5.0,
tau_syn_E2=5.0,
tau_syn_I=5.0,
tau_refrac=0.1,
i_offset=0.0,
v=-65.0,
isyn_exc=0.0,
isyn_inh=0.0,
isyn_exc2=0.0):
# pylint: disable=too-many-arguments, too-many-locals
neuron_model = NeuronModelLeakyIntegrateAndFire(
v, v_rest, tau_m, cm, i_offset, v_reset, tau_refrac)
synapse_type = SynapseTypeDualExponential(tau_syn_E, tau_syn_E2,
tau_syn_I, isyn_exc,
isyn_exc2, isyn_inh)
input_type = InputTypeCurrent()
threshold_type = ThresholdTypeStatic(v_thresh)
super(IFCurrDualExpBase, self).__init__(model_name="IF_curr_dual_exp",
binary="IF_curr_exp_dual.aplx",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type)
def __init__(self,
tau_m=20.0,
cm=1.0,
v_rest=-65.0,
v_reset=-65.0,
v_thresh=-50.0,
tau_syn_E=5.0,
tau_syn_I=5.0,
tau_refrac=0.1,
i_offset=0.0,
tau_ca2=50.0,
i_ca2=0.0,
i_alpha=0.1,
v=-65.0,
isyn_exc=0.0,
isyn_inh=0.0):
# pylint: disable=too-many-arguments, too-many-locals
neuron_model = NeuronModelLeakyIntegrateAndFire(
v, v_rest, tau_m, cm, i_offset, v_reset, tau_refrac)
synapse_type = SynapseTypeExponential(tau_syn_E, tau_syn_I, isyn_exc,
isyn_inh)
input_type = InputTypeCurrent()
threshold_type = ThresholdTypeStatic(v_thresh)
additional_input_type = AdditionalInputCa2Adaptive(
tau_ca2, i_ca2, i_alpha)
super(IFCurrExpCa2Adaptive,
self).__init__(model_name="IF_curr_exp_ca2_adaptive",
binary="IF_curr_exp_ca2_adaptive.aplx",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type,
additional_input_type=additional_input_type)
def __init__(self,
tau_m=20.0,
cm=1.0,
v_rest=-65.0,
v_reset=-65.0,
v_thresh=-50.0,
tau_syn_E=5.0,
tau_syn_I=5.0,
tau_refrac=0.1,
i_offset=0.0,
e_rev_E=0.0,
e_rev_I=-70.0,
du_th=0.5,
tau_th=20.0,
v=-65.0,
isyn_exc=0.0,
isyn_inh=0.0):
# pylint: disable=too-many-arguments, too-many-locals
neuron_model = NeuronModelLeakyIntegrateAndFire(
v, v_rest, tau_m, cm, i_offset, v_reset, tau_refrac)
synapse_type = SynapseTypeExponential(tau_syn_E, tau_syn_I, isyn_exc,
isyn_inh)
input_type = InputTypeConductance(e_rev_E, e_rev_I)
threshold_type = ThresholdTypeMaassStochastic(du_th, tau_th, v_thresh)
super(IFCondExpStoc, self).__init__(model_name="IF_cond_exp_stoc",
binary="IF_cond_exp_stoc.aplx",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type)
def __init__(self,
tau_m=20.0,
cm=1.0,
v_rest=-65.0,
v_reset=-65.0,
v_thresh=-50.0,
tau_syn_E=0.5,
tau_syn_I=0.5,
tau_refrac=0.1,
i_offset=0.0,
v=-65.0,
exc_response=0.0,
exc_exp_response=0.0,
inh_response=0.0,
inh_exp_response=0.0):
# pylint: disable=too-many-arguments, too-many-locals
neuron_model = NeuronModelLeakyIntegrateAndFire(
v, v_rest, tau_m, cm, i_offset, v_reset, tau_refrac)
synapse_type = SynapseTypeAlpha(exc_response, exc_exp_response,
tau_syn_E, inh_response,
inh_exp_response, tau_syn_I)
input_type = InputTypeCurrent()
threshold_type = ThresholdTypeStatic(v_thresh)
super(IFCurrAlpha, self).__init__(model_name="IF_curr_alpha",
binary="IF_curr_alpha.aplx",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type)
def __init__(self,
tau_m=20.0,
cm=1.0,
v_rest=-65.0,
v_reset=-65.0,
v_thresh=-50.0,
tau_syn_E=5.0,
tau_syn_I=5.0,
tau_refrac=0.1,
i_offset=0.0,
v=-65.0,
isyn_exc=0.0,
isyn_inh=0.0,
multiplicator=0.0,
inh_input_previous=0.0):
neuron_model = NeuronModelLeakyIntegrateAndFire(
v, v_rest, tau_m, cm, i_offset, v_reset, tau_refrac)
synapse_type = SynapseTypeExponential(tau_syn_E, tau_syn_I, isyn_exc,
isyn_inh)
input_type = InputTypeCurrentSEMD(multiplicator, inh_input_previous)
threshold_type = ThresholdTypeStatic(v_thresh)
super(IFCurrExpSEMDBase, self).__init__(model_name="IF_curr_exp_SEMD",
binary="IF_curr_exp_sEMD.aplx",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type)
def __init__(self,
tau_m=20.0,
cm=1.0,
v_rest=-65.0,
v_reset=-65.0,
v_thresh=-50.0,
tau_syn_E=5.0,
tau_syn_E2=5.0,
tau_syn_I=5.0,
tau_refrac=0.1,
i_offset=0.0,
v=-65.0,
isyn_exc=0.0,
isyn_exc2=0.0,
isyn_inh=0.0,
multiplicator=0.0,
exc2_old=0.0,
scaling_factor=1.0):
neuron_model = NeuronModelLeakyIntegrateAndFire(
v, v_rest, tau_m, cm, i_offset, v_reset, tau_refrac)
synapse_type = SynapseTypeSEMD(tau_syn_E, tau_syn_E2, tau_syn_I,
isyn_exc, isyn_exc2, isyn_inh,
multiplicator, exc2_old, scaling_factor)
input_type = InputTypeCurrent()
threshold_type = ThresholdTypeStatic(v_thresh)
super().__init__(model_name="IF_curr_exp_SEMD",
binary="IF_curr_exp_sEMD.aplx",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type)
def __init__(self,
n_neurons,
spikes_per_second=AbstractPopulationVertex.
non_pynn_default_parameters['spikes_per_second'],
ring_buffer_sigma=AbstractPopulationVertex.
non_pynn_default_parameters['ring_buffer_sigma'],
incoming_spike_buffer_size=AbstractPopulationVertex.
non_pynn_default_parameters['incoming_spike_buffer_size'],
constraints=AbstractPopulationVertex.
non_pynn_default_parameters['constraints'],
label=AbstractPopulationVertex.
non_pynn_default_parameters['label'],
tau_m=default_parameters['tau_m'],
cm=default_parameters['cm'],
v_rest=default_parameters['v_rest'],
v_reset=default_parameters['v_reset'],
v_thresh=default_parameters['v_thresh'],
tau_syn_E=default_parameters['tau_syn_E'],
tau_syn_I=default_parameters['tau_syn_I'],
tau_refrac=default_parameters['tau_refrac'],
i_offset=default_parameters['i_offset'],
e_rev_E=default_parameters['e_rev_E'],
e_rev_I=default_parameters['e_rev_I'],
du_th=default_parameters['du_th'],
tau_th=default_parameters['tau_th'],
v_init=initialize_parameters['v_init'],
isyn_exc=default_parameters['isyn_exc'],
isyn_inh=default_parameters['isyn_inh']):
# pylint: disable=too-many-arguments, too-many-locals
neuron_model = NeuronModelLeakyIntegrateAndFire(
n_neurons, v_init, v_rest, tau_m, cm, i_offset, v_reset,
tau_refrac)
synapse_type = SynapseTypeExponential(n_neurons,
tau_syn_E,
tau_syn_I,
initial_input_exc=isyn_exc,
initial_input_inh=isyn_inh)
input_type = InputTypeConductance(n_neurons, e_rev_E, e_rev_I)
threshold_type = ThresholdTypeMaassStochastic(n_neurons, du_th, tau_th,
v_thresh)
super(IFCondExpStoc, self).__init__(
n_neurons=n_neurons,
binary="IF_cond_exp_stoc.aplx",
label=label,
max_atoms_per_core=IFCondExpStoc._model_based_max_atoms_per_core,
spikes_per_second=spikes_per_second,
ring_buffer_sigma=ring_buffer_sigma,
incoming_spike_buffer_size=incoming_spike_buffer_size,
model_name="IF_cond_exp_stoc",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type,
constraints=constraints)
def __init__(
self,
devices,
create_edges,
translator=None,
# default params for the neuron model type
tau_m=20.0,
cm=1.0,
v_rest=0.0,
v_reset=0.0,
tau_syn_E=5.0,
tau_syn_I=5.0,
tau_refrac=0.1,
i_offset=0.0,
v=0.0,
isyn_inh=0.0,
isyn_exc=0.0):
"""
:param devices:\
The AbstractMulticastControllableDevice instances to be controlled\
by the population
:param create_edges:\
True if edges to the devices should be added by this device (set\
to False if using the device over Ethernet using a translator)
:param translator:\
Translator to be used when used for Ethernet communication. Must\
be provided if the device is to be controlled over Ethernet.
"""
# pylint: disable=too-many-arguments, too-many-locals
if not devices:
raise ConfigurationException("No devices specified")
neuron_model = NeuronModelLeakyIntegrateAndFire(
v, v_rest, tau_m, cm, i_offset, v_reset, tau_refrac)
synapse_type = SynapseTypeExponential(tau_syn_E, tau_syn_I, isyn_inh,
isyn_exc)
input_type = InputTypeCurrent()
threshold_type = ThresholdTypeMulticastDeviceControl(devices)
self._devices = devices
self._translator = translator
self._create_edges = create_edges
super(ExternalDeviceLifControl,
self).__init__(model_name="ExternalDeviceLifControl",
binary="external_device_lif_control.aplx",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type)
def __init__(
self,
n_neurons,
spikes_per_second=_apv_defs['spikes_per_second'],
ring_buffer_sigma=_apv_defs['ring_buffer_sigma'],
incoming_spike_buffer_size=_apv_defs['incoming_spike_buffer_size'],
constraints=_apv_defs['constraints'],
label=_apv_defs['label'],
tau_m=default_parameters['tau_m'],
cm=default_parameters['cm'],
v_rest=default_parameters['v_rest'],
v_reset=default_parameters['v_reset'],
v_thresh=default_parameters['v_thresh'],
tau_syn_E=default_parameters['tau_syn_E'],
tau_syn_I=default_parameters['tau_syn_I'],
tau_refrac=default_parameters['tau_refrac'],
i_offset=default_parameters['i_offset'],
tau_ca2=default_parameters["tau_ca2"],
i_ca2=default_parameters["i_ca2"],
i_alpha=default_parameters["i_alpha"],
v_init=initialize_parameters['v_init'],
isyn_exc=default_parameters['isyn_exc'],
isyn_inh=default_parameters['isyn_inh']):
# pylint: disable=too-many-arguments, too-many-locals
neuron_model = NeuronModelLeakyIntegrateAndFire(
n_neurons, v_init, v_rest, tau_m, cm, i_offset, v_reset,
tau_refrac)
synapse_type = SynapseTypeExponential(n_neurons,
tau_syn_E,
tau_syn_I,
initial_input_exc=isyn_exc,
initial_input_inh=isyn_inh)
input_type = InputTypeCurrent()
threshold_type = ThresholdTypeStatic(n_neurons, v_thresh)
additional_input = AdditionalInputCa2Adaptive(n_neurons, tau_ca2,
i_ca2, i_alpha)
super(IFCurrExpCa2Adaptive, self).__init__(
n_neurons=n_neurons,
binary="IF_curr_exp_ca2_adaptive.aplx",
label=label,
max_atoms_per_core=self._model_based_max_atoms_per_core,
spikes_per_second=spikes_per_second,
ring_buffer_sigma=ring_buffer_sigma,
incoming_spike_buffer_size=incoming_spike_buffer_size,
model_name="IF_curr_exp_ca2_adaptive",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type,
additional_input=additional_input,
constraints=constraints)
def __init__(
self,
n_neurons,
spikes_per_second=None,
ring_buffer_sigma=None,
incoming_spike_buffer_size=None,
constraints=None,
label=None,
tau_m=default_parameters['tau_m'],
cm=default_parameters['cm'],
v_rest=default_parameters['v_rest'],
v_reset=default_parameters['v_reset'],
v_thresh=default_parameters['v_thresh'],
exc_response=non_pynn_default_parameters['exc_response'],
exc_exp_response=non_pynn_default_parameters['exc_exp_response'],
tau_syn_E=default_parameters['tau_syn_E'],
inh_response=non_pynn_default_parameters['inh_response'],
inh_exp_response=non_pynn_default_parameters['inh_exp_response'],
tau_syn_I=default_parameters['tau_syn_I'],
tau_refrac=default_parameters['tau_refrac'],
i_offset=default_parameters['i_offset'],
v_init=initialize_parameters['v_init']):
# pylint: disable=too-many-arguments, too-many-locals
neuron_model = NeuronModelLeakyIntegrateAndFire(
n_neurons, v_init, v_rest, tau_m, cm, i_offset, v_reset,
tau_refrac)
synapse_type = SynapseTypeAlpha(n_neurons, exc_response,
exc_exp_response, tau_syn_E,
inh_response, inh_exp_response,
tau_syn_I)
input_type = InputTypeCurrent()
threshold_type = ThresholdTypeStatic(n_neurons, v_thresh)
super(IFCurrAlpha, self).__init__(
n_neurons=n_neurons,
binary="IF_curr_alpha.aplx",
label=label,
max_atoms_per_core=IFCurrAlpha._model_based_max_atoms_per_core,
spikes_per_second=spikes_per_second,
ring_buffer_sigma=ring_buffer_sigma,
incoming_spike_buffer_size=incoming_spike_buffer_size,
model_name="IF_curr_alpha",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type,
constraints=constraints)
def __init__(
self, tau_m=20.0, cm=1.0, v_rest=-65.0, v_reset=-65.0,
v_thresh=-50.0, tau_refrac=0.1, i_offset=0.0, v=-65.0,
isyn_exc=0.0, isyn_inh=0.0):
# pylint: disable=too-many-arguments, too-many-locals
neuron_model = NeuronModelLeakyIntegrateAndFire(
v, v_rest, tau_m, cm, i_offset, v_reset, tau_refrac)
synapse_type = SynapseTypeDelta(isyn_inh, isyn_exc)
input_type = InputTypeCurrent()
threshold_type = ThresholdTypeStatic(v_thresh)
super(IFCurrDelta, self).__init__(
model_name="IF_curr_delta", binary="IF_curr_delta.aplx",
neuron_model=neuron_model, input_type=input_type,
synapse_type=synapse_type, threshold_type=threshold_type)
def __init__(self,
n_neurons,
spikes_per_second=AbstractPopulationVertex.
non_pynn_default_parameters['spikes_per_second'],
ring_buffer_sigma=AbstractPopulationVertex.
non_pynn_default_parameters['ring_buffer_sigma'],
incoming_spike_buffer_size=AbstractPopulationVertex.
non_pynn_default_parameters['incoming_spike_buffer_size'],
constraints=AbstractPopulationVertex.
non_pynn_default_parameters['constraints'],
label=AbstractPopulationVertex.
non_pynn_default_parameters['label'],
tau_m=default_parameters['tau_m'],
cm=default_parameters['cm'],
v_rest=default_parameters['v_rest'],
v_reset=default_parameters['v_reset'],
v_thresh=default_parameters['v_thresh'],
tau_refrac=default_parameters['tau_refrac'],
i_offset=default_parameters['i_offset'],
v_init=initialize_parameters['v_init'],
isyn_exc=default_parameters['isyn_exc'],
isyn_inh=default_parameters['isyn_inh']):
# pylint: disable=too-many-arguments, too-many-locals
neuron_model = NeuronModelLeakyIntegrateAndFire(
n_neurons, v_init, v_rest, tau_m, cm, i_offset, v_reset,
tau_refrac)
synapse_type = SynapseTypeDelta(n_neurons=n_neurons,
initial_input_inh=isyn_inh,
initial_input_exc=isyn_exc)
input_type = InputTypeCurrent()
threshold_type = ThresholdTypeStatic(n_neurons, v_thresh)
super(IFCurrDelta, self).__init__(
n_neurons=n_neurons,
binary="IF_curr_delta.aplx",
label=label,
max_atoms_per_core=IFCurrDelta._model_based_max_atoms_per_core,
spikes_per_second=spikes_per_second,
ring_buffer_sigma=ring_buffer_sigma,
incoming_spike_buffer_size=incoming_spike_buffer_size,
model_name="IF_curr_delta",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type,
constraints=constraints)
def __init__(
self, n_neurons, spikes_per_second=AbstractPopulationVertex.
none_pynn_default_parameters['spikes_per_second'],
ring_buffer_sigma=AbstractPopulationVertex.
none_pynn_default_parameters['ring_buffer_sigma'],
incoming_spike_buffer_size=AbstractPopulationVertex.
none_pynn_default_parameters['incoming_spike_buffer_size'],
constraints=AbstractPopulationVertex.none_pynn_default_parameters[
'constraints'],
label=AbstractPopulationVertex.none_pynn_default_parameters[
'label'],
tau_m=default_parameters['tau_m'],
cm=default_parameters['cm'],
v_rest=default_parameters['v_rest'],
v_reset=default_parameters['v_reset'],
v_thresh=default_parameters['v_thresh'],
tau_syn_E=default_parameters['tau_syn_E'],
tau_syn_I=default_parameters['tau_syn_I'],
tau_refrac=default_parameters['tau_refrac'],
i_offset=default_parameters['i_offset'],
v_init=none_pynn_default_parameters['v_init'],
isyn_exc=default_parameters['isyn_exc'],
isyn_inh=default_parameters['isyn_inh']):
neuron_model = NeuronModelLeakyIntegrateAndFire(
n_neurons, v_init, v_rest, tau_m, cm, i_offset,
v_reset, tau_refrac)
synapse_type = SynapseTypeExponentialSupervision(
n_neurons, tau_syn_E, tau_syn_I, isyn_exc, isyn_inh)
input_type = InputTypeCurrent()
threshold_type = ThresholdTypeStatic(n_neurons, v_thresh)
AbstractPopulationVertex.__init__(
self, n_neurons=n_neurons, binary="IF_curr_exp_supervision.aplx", label=label,
max_atoms_per_core=IFCurrExpSupervision._model_based_max_atoms_per_core,
spikes_per_second=spikes_per_second,
ring_buffer_sigma=ring_buffer_sigma,
incoming_spike_buffer_size=incoming_spike_buffer_size,
model_name="IF_curr_exp_supervision", neuron_model=neuron_model,
input_type=input_type, synapse_type=synapse_type,
threshold_type=threshold_type, constraints=constraints)
def __init__(
self,
n_neurons,
devices,
create_edges,
translator=None,
# standard neuron stuff
spikes_per_second=_apv_defs['spikes_per_second'],
label=_apv_defs['label'],
ring_buffer_sigma=_apv_defs['ring_buffer_sigma'],
incoming_spike_buffer_size=_apv_defs['incoming_spike_buffer_size'],
constraints=_apv_defs['constraints'],
# default params for the neuron model type
tau_m=default_parameters['tau_m'],
cm=default_parameters['cm'],
v_rest=default_parameters['v_rest'],
v_reset=default_parameters['v_reset'],
tau_syn_E=default_parameters['tau_syn_E'],
tau_syn_I=default_parameters['tau_syn_I'],
tau_refrac=default_parameters['tau_refrac'],
i_offset=default_parameters['i_offset'],
v_init=initialize_parameters['v_init'],
isyn_inh=default_parameters['isyn_inh'],
isyn_exc=default_parameters['isyn_exc']):
"""
:param n_neurons: The number of neurons in the population
:param devices:\
The AbstractMulticastControllableDevice instances to be controlled\
by the population
:param create_edges:\
True if edges to the devices should be added by this dev (set\
to False if using the dev over Ethernet using a translator)
:param translator:\
Translator to be used when used for Ethernet communication. Must\
be provided if the dev is to be controlled over Ethernet.
"""
# pylint: disable=too-many-arguments, too-many-locals
if not devices:
raise ConfigurationException("No devices specified")
# Verify that there are the correct number of neurons
if n_neurons != len(devices):
raise ConfigurationException(
"The number of neurons must match the number of devices")
# Create a partition to key map
self._partition_id_to_key = OrderedDict(
(str(dev.device_control_partition_id), dev.device_control_key)
for dev in devices)
# Create a partition to atom map
self._partition_id_to_atom = {
partition: i
for (i, partition) in enumerate(self._partition_id_to_key.keys())
}
neuron_model = NeuronModelLeakyIntegrateAndFire(
n_neurons, v_init, v_rest, tau_m, cm, i_offset, v_reset,
tau_refrac)
synapse_type = SynapseTypeExponential(n_neurons,
tau_syn_E,
tau_syn_I,
initial_input_inh=isyn_inh,
initial_input_exc=isyn_exc)
input_type = InputTypeCurrent()
threshold_type = ThresholdTypeMulticastDeviceControl(devices)
self._devices = devices
self._message_translator = translator
# Add the edges to the devices if required
self._dependent_vertices = list()
if create_edges:
self._dependent_vertices = devices
super(ExternalDeviceLifControl, self).__init__(
n_neurons=n_neurons,
binary="external_device_lif_control.aplx",
label=label,
max_atoms_per_core=(
ExternalDeviceLifControl._model_based_max_atoms_per_core),
spikes_per_second=spikes_per_second,
ring_buffer_sigma=ring_buffer_sigma,
incoming_spike_buffer_size=incoming_spike_buffer_size,
model_name="ExternalDeviceLifControl",
neuron_model=neuron_model,
input_type=input_type,
synapse_type=synapse_type,
threshold_type=threshold_type,
constraints=constraints)