def main():
arg_parser = argparse.ArgumentParser()
arg_parser.add_argument('read_path')
arg_parser.add_argument('write_path')
args = arg_parser.parse_args()
with open(args.read_path, 'r') as source:
text = source.read()
lexer = Lexer(text)
tokens = lexer.lex()
parser = Parser(tokens)
ast = parser.parse()
symbolizer = Symbolizer(ast)
symbolizer.symbolize()
optimizer = Optimizer(ast)
optimizer.optimize()
grapher = Grapher(ast)
grapher.graph()
generator = Generator(ast)
generator.generate(args.write_path)
runner = Runner(ast)
runner.run()
def main():
try:
config = Config.load()
init_logging(config)
runner = Runner(config)
runner.run()
return 0
except KeyboardInterrupt:
_logger.info("aborted.")
return 0
except MessageException as ex:
_logger.error(ex)
_logger.error("aborted!")
return 1
except Exception as ex:
_logger.exception(ex)
_logger.error("aborted!")
# no runner.close() to signal abnormal termination!
return 1
def test_run_proc(self, cfg_read):
with mock.patch('src.runner.multiprocessing',
autospec=True) as multi_process_mock:
runner = Runner()
procs = [runner.web_monitor_proc]
runner.run_procs(procs, cfg_read)
multi_process_mock.Process.assert_called_once_with(
target=procs[0], args=(cfg_read, ))
multi_process_mock.Process.return_value.join.assert_called_once()
def main(is_debug):
""" Training Pipeline
"""
with open("./config.yaml") as yf:
config = yaml.safe_load(yf)
# run single models
for config_ in config["models"]:
pprint.pprint(config_)
runner = Runner(settings, AttrDict(config_))
runner.run(is_debug=args.debug, multi_gpu=args.multi_gpu)
def test_web_monitor_proc(self, asyncio_mock, web_monitor_app_mock,
cfg_read):
runner = Runner()
runner.web_monitor_proc(cfg_read)
asyncio_mock.get_event_loop.assert_called_once()
loop_mock = asyncio_mock.get_event_loop.return_value
loop_mock.stop.assert_called_once()
loop_mock.run_until_complete.assert_called_once()
web_monitor_app_mock.return_value.run.assert_called_once()
web_monitor_app_mock.return_value.stop.assert_called_once()
def test_stats_consumer_proc(self, asyncio_mock, consumer_app_mock,
db_mock, cfg_read):
runner = Runner()
runner.stats_consumer_proc(cfg_read)
asyncio_mock.get_event_loop.assert_called_once()
loop_mock = asyncio_mock.get_event_loop.return_value
loop_mock.stop.assert_called_once()
loop_mock.run_until_complete.assert_called_once()
db_mock.return_value.clean_up.assert_called_once()
consumer_app_mock.return_value.run.assert_called_once()
consumer_app_mock.return_value.stop.assert_called_once()
def test_find_existing_file_or_new_mail_path_1(self):
# test that file already exists!
class DummyMail:
def __init__(self):
self.uid = 123
self.date = datetime(2020, 9, 10, 18, 7, 6)
self.subject = " Fwd: Re: Fwd: fwD: re: 123 "
self.to = (
"*****@*****.**",
"*****@*****.**",
)
self.from_ = "*****@*****.**"
self.raw_data = bytearray(b"\x00\x11\x0F") # no mail data
mail = DummyMail()
test_path = os.path.join(os.path.dirname(__file__), "../__test__/find")
os.makedirs(test_path, exist_ok=True)
mail_path = os.path.join(test_path, "orig.no-eml")
with open(mail_path, "wb") as file:
file.write(mail.raw_data)
result = Runner.find_existing_file_or_new_mail_path(mail, mail_path)
self.assertEqual(result, None) # file exits already
def main():
server_socket = get_server_socket()
while True:
connection, address = server_socket.accept()
connection.send('accepted'.encode())
print('server start')
Runner(ClientInfo(connection, address)).start()
def measurement__set_csv_writer(self, args):
import os
from src.bank import Bank
from src.household import Household
from src.firm import Firm
from src.environment import Environment
from src.transaction import Transaction
from src.market import Market
from src.runner import Runner
from src.measurement import Measurement
text = "This test checks measurement.set_csv_writer \n"
self.print_info(text)
#
# INITIALIZATION
#
environment_directory = str(args[0])
identifier = str(args[1])
log_directory = str(args[2])
# Configure logging parameters so we get output while the program runs
logging.basicConfig(format='%(asctime)s %(message)s', datefmt='%m/%d/%Y %H:%M:%S',
filename=log_directory + identifier + ".log", level=logging.INFO)
logging.info('START logging for test measurement__set_csv_writer in run: %s',
environment_directory + identifier + ".xml")
# Construct household filename
environment = Environment(environment_directory, identifier)
# Construct a runner
runner = Runner(environment)
# generate a bank
bank = Bank()
bank.identifier = "test_bank"
environment.banks.append(bank)
# generate a firm
firm = Firm()
firm.identifier = "test_firm"
environment.firms.append(firm)
# generate a household
household = Household()
household.identifier = "test_household"
environment.households.append(household)
#
# TESTING
#
import csv
file_new = open("__init__.py", "r")
csv_writer = csv.writer(file_new, lineterminator='\n')
measurement = Measurement(environment, runner)
print("Measurement's csv_writer:")
print(measurement.get_csv_writer())
measurement.set_csv_writer(csv_writer)
print("Measurement's csv_writer:")
print(measurement.get_csv_writer())
def initialize_shock(self, shock_config):
from src.runner import Runner
runner = Runner(self)
from src.shock import Shock
shock = Shock(self, runner)
shock.read_xml_config_file(shock_config)
self.shocks.append(shock)
def main():
args = parse_args()
set_global_seeds(666)
config = get_config(args.config)
pprint(config)
config['train_params'][
'name'] = f'{config["train_params"]["name"]}/fold{args.fold}'
factory = Factory(config['train_params'])
data_factory = DataFactory(config['data_params'], fold=args.fold)
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
callbacks = create_callbacks(config['train_params']['name'],
config['dumps'])
trainer = Runner(stages=config['stages'],
factory=factory,
callbacks=callbacks,
device=device)
trainer.fit(data_factory)
class TestRunner(unittest.TestCase):
def setUp(self):
self.logger = MockLogger()
self.logger.record_results = mock.MagicMock()
self.gdb_manager = MockGdbManager()
self.gdb_manager.read_energy = mock.MagicMock()
self.runner = Runner(self.logger, self.gdb_manager)
def testLoggerExists(self):
self.assertEqual(self.logger, self.runner.logger)
def testGdbManagerExists(self):
self.assertEqual(self.gdb_manager, self.runner.gdb_manager)
def testRunBinaryCallsGdbManager(self):
old_num_calls = len(self.gdb_manager.read_energy.call_args_list)
self.runner.run_binary(None, None)
self.assertEqual(1, len(self.gdb_manager.read_energy.call_args_list) - old_num_calls)
def init(variant,
ckpt="lve",
base="",
prefix="",
graph_file=None,
device=None):
# Initialize model
# If graph file is specified in config, that will be used
# If config specifies directory, we'll use `graph_file` for the filename
# If `graph_file` is None, the (alphabetically) first file will be used
run_type = "eval"
exp_config = osp.join("../configs", prefix, f"{variant}.yaml")
if base != "":
exp_config = [osp.join("../configs", f"{base}.yaml"), exp_config]
ckpt_path = f"{variant}.{ckpt}.pth"
config, ckpt_path = prepare_config(exp_config,
run_type,
ckpt_path, [
"USE_TENSORBOARD",
False,
"SYSTEM.NUM_GPUS",
1,
],
suffix=prefix,
graph_file=graph_file)
if graph_file is None and osp.isdir(config.MODEL.GRAPH_FILE):
config.defrost()
graphs = sorted(f for f in os.listdir(config.MODEL.GRAPH_FILE)
if f.endswith('.edgelist'))
graph = graphs[0] # ! Oh shoot. I messed this up.
config.MODEL.GRAPH_FILE = osp.join(config.MODEL.GRAPH_FILE, graph)
graph_id = graph[:5]
add_suffix(config, graph_id)
ckpt_dir, ckpt_fn = osp.split(ckpt_path)
ckpt_path = osp.join(ckpt_dir, graph_id, ckpt_fn)
# Update relative path
# Incorporate graph file into this loading. Currently, it will use the default one in the config.
config.freeze()
runner = Runner(config)
runner.logger.clear_filehandlers()
runner.load_device(device=device)
return runner, ckpt_path
def runner__do_run(self, args):
import os
from src.bank import Bank
from src.household import Household
from src.firm import Firm
from src.environment import Environment # needed for the Directory
from src.runner import Runner
from src.measurement import Measurement
text = "This test checks runner.do_run \n"
self.print_info(text)
#
# INITIALIZATION
#
environment_directory = str(args[0])
identifier = str(args[1])
log_directory = str(args[2])
# Configure logging parameters so we get output while the program runs
logging.basicConfig(
format="%(asctime)s %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
filename=log_directory + identifier + ".log",
level=logging.INFO,
)
logging.info("START logging for test runner_do_run in run: %s", environment_directory + identifier + ".xml")
# Construct bank filename
environment = Environment(environment_directory, identifier)
# get the bank_directory from the environment
bank_directory = environment.bank_directory
# and loop over all banks in the directory for testing purpose (just one bank)
listing = os.listdir(bank_directory)
bank_filename = bank_directory + listing[0]
# making an instance of the Runner class
runner = Runner(environment)
#
# TESTING
#
runner.do_run(environment)
def setup(params, epsilon_action_modifier, parallel_size):
env_creator = EnvCreator(params.env_name,
parallel_size,
wrapper=params.env_wrapper,
seed=12)
agent = DQNAgent(env_creator, params.network_fn, epsilon_action_modifier,
params.gamma, params.learning_rate,
params.target_net_sync, params.use_double_q)
runner = Runner(env_creator, agent)
return agent, runner
def start():
try:
path = "var/accounts/" + os.getenv('ACCOUNT_FILE_NAME')
if os.path.isfile(path):
logger.info('Found file ' + path)
with open(path) as json_file:
data = json.load(json_file)
if not data[0]['username'] or not data[0]['password']:
logger.error('Username and password are required')
for account in data:
runner = Runner(account, os.getenv('API_URL'), logger)
try:
runner.start()
except:
runner.driver.quit()
else:
if not os.getenv('ACCOUNT_FILE_NAME'):
logger.error('ACCOUNT_FILE_NAME environment variable not set')
else:
logger.error('Could not find file: ' + path)
except Exception as error:
just_the_string = traceback.format_exc()
logger.error(just_the_string)
logger.exception(error)
return 'Finished'
def initialize_shock(self, shock_config):
from src.runner import Runner
runner = Runner(self)
from src.shock import Shock
shock = Shock(self, runner)
shock.read_xml_config_file(shock_config)
self.shocks.append(shock)
shock.measure_intitial_shock(self)
for k, v in shock.legend.iteritems():
if shock.legend[k] != 0:
self.shock_measure = (k, v)
# df_shock = pd.DataFrame[]
# you can use this code below to see if the function of reading the shock worked
for key in shock.asset_returns:
if shock.asset_returns[key] != 0.0:
# print "0. ***ENV.PY*** When shock is initialised: The asset class", key, "is shocked by", shock.asset_returns[key] * 100, "%"
pass
ax.set_ylabel('Accuracy', size=14)
ax.tick_params(labelsize=14)
plt.savefig(f'../model/tuning/{NAME}-NB.png', dpi=300)
if __name__ == '__main__':
base_params = {'alpha': 1.0, 'fit_prior': True, 'class_prior': None}
params_NB = dict(base_params)
param_grid_ = {'alpha': [0.001, 0.01, 0.1, 1, 10, 100]}
features = ["bow", "n-gram", "tf-idf", "n-gram-tf-idf"]
results = []
NAME = ":".join(features)
for name in features:
x = Runner.load_x_train(name)
y = Runner.load_y_train()
model = ModelMultinomialNB(name, **dict(params_NB))
search = GridSearchCV(model,
cv=6,
param_grid=param_grid_,
return_train_score=True,
verbose=10,
refit=True)
search.fit(x, y)
results.append((search, name))
logger.info(
f'{name} - bestscore : {search.best_score_} - result :{search.cv_results_["mean_test_score"]}'
)
res = pd.DataFrame.from_dict(
params = {'kernel': 'linear', 'gamma': 0.001}
params_SVC = dict(params)
param_grid_ = [{
'n_components': [10, 30, 50, 100],
'n_iter': [8, 16],
'C': [1, 10, 100, 1000]
}, {
'apply_svd': [False],
'C': [1, 10, 100, 1000]
}]
feature = [["mfcc", "delta", "power"]]
results = []
x = Runner.load_x_train(feature)
y = Runner.load_y_train()
model = ModelSVC("SVC", **params_SVC)
search = GridSearchCV(model,
cv=5,
param_grid=param_grid_,
return_train_score=True)
search.fit(x, y)
results.append((search, feature))
logger.info(
f'{feature} - bestscore : {search.best_score_} - result :{search.best_params_}'
)
for search, name in results:
logger.info(f'{name} - bestscore : {search.best_score_}')
# load neighbourhood data
with open('parameters/ineffective_lock_down/neighbourhood_data.json') as json_file:
neighbourhood_data = json.load(json_file)
# load age data
age_distribution = pd.read_csv('age_dist.csv', sep=';', index_col=0)
age_distribution_per_ward = dict(age_distribution.transpose())
# Monte Carlo simulation
for seed in range(parameters['monte_carlo_runs']):
# make new folder for seed, if it does not exist
if not os.path.exists('measurement/inef_lockdown/seed{}'.format(seed)):
os.makedirs('measurement/inef_lockdown/seed{}'.format(seed))
# initialization
environment = EnvironmentNetwork(seed, parameters, neighbourhood_data, age_distribution_per_ward)
# running the simulation
runner = Runner()
runner.ineffective_lock_down(environment, seed)
# save network
if not parameters["high_performance"]:
for idx, network in enumerate(environment.infection_states):
for i, node in enumerate(network.nodes):
network.nodes[i]['agent'] = network.nodes[i]['agent'].status
idx_string = '{0:04}'.format(idx)
nx.write_graphml_lxml(network, "measurement/inef_lockdown/seed{}/network_time{}.graphml".format(seed, idx_string))
environment_directory = str(args[1])
identifier = str(args[2])
log_directory = str(args[3])
measurement_directory = str(args[4])
# Configure logging parameters so we get output while the program runs
logging.basicConfig(format='%(asctime)s %(message)s',
datefmt='%m/%d/%Y %H:%M:%S',
filename=log_directory + identifier + ".log",
level=logging.INFO)
logging.info('START logging for run: %s',
environment_directory + identifier + ".xml")
environment = Environment()
environment.initialize(environment_directory, identifier)
runner = Runner()
measurement = Measurement()
#
# UPDATE STEP
#
for i in range(environment.parameters.numSimulations):
logging.info(' STARTED with run %s', str(i))
environment.initialize(environment_directory, identifier)
# check that environment file has been read correctly
#environment.write_environment_file(identifier)
runner.initialize(environment)
measurement.initialize() # clear the previous measurement
# do the run
runner.do_run(measurement, "info")
# -------------------------------------------------------------------------
#
# MAIN
#
# -------------------------------------------------------------------------
if __name__ == '__main__':
from src.environment import Environment
from src.runner import Runner
args = ["configs/environment/", "environment_config", "log/"]
#
# INITIALIZATION
#
environment_directory = str(args[0])
identifier = str(args[1])
log_directory = str(args[2])
environment = Environment(environment_directory, identifier)
runner = Runner(environment)
#
# UPDATE STEP
#
# for i in range(int(environment.static_parameters['num_simulations'])):
# environment.initialize(environment_directory, identifier)
# runner.initialize(environment)
# # do the run
# runner.do_run(environment)
def setUp(self):
self.logger = MockLogger()
self.logger.record_results = mock.MagicMock()
self.gdb_manager = MockGdbManager()
self.gdb_manager.read_energy = mock.MagicMock()
self.runner = Runner(self.logger, self.gdb_manager)
import os, sys
sys.path.append(os.path.abspath('..'))
from src.runner import Runner
'''
Run this script to train and pickle models for app use. Pickeled models get saved to the models directory.
Script also produces various visualizations of the data that can be found in the media directory.
'''
if __name__ == '__main__':
runner = Runner()
'''TF-IDF'''
runner.run_naive_bayes_sentiment()
runner.run_naive_bayes_topic()
'''Doc2Vec'''
runner.run_doc2vec_logreg()
runner.run_doc2vec_naivebayes()
'''EDA Plots of Data'''
# runner.make_plots()
'input_dropout': 0.05,
'optimizer': {
'lr': 0.0015,
'type': 'adam'
}
}
#tf-idf = {'batch_norm': 'no', 'batch_size': 192.0, 'hidden_activation': 'prelu', 'hidden_dropout': 0.0, 'hidden_layers': 2.0, 'hidden_units': 192.0, 'input_dropout': 0.05, 'optimizer': {'lr': 0.0018, 'type': 'adam'}}
#word2vec_mean = {'batch_norm': 'before_act', 'batch_size': 256.0, 'hidden_activation': 'prelu', 'hidden_dropout': 0.25, 'hidden_layers': 2.0, 'hidden_units': 128.0, 'input_dropout': 0.15, 'optimizer': {'lr': 0.00037, 'type': 'adam'}}
#word2vec_max = {'batch_norm': 'no', 'batch_size': 32.0, 'hidden_activation': 'relu', 'hidden_dropout': 0.3, 'hidden_layers': 3.0, 'hidden_units': 160.0, 'input_dropout': 0.15, 'optimizer': {'lr': 0.00016, 'type': 'adam'}}
#word2vec_concat = {'batch_norm': 'before_act', 'batch_size': 32.0, 'hidden_activation': 'prelu', 'hidden_dropout': 0.25, 'hidden_layers': 2.0, 'hidden_units': 96.0, 'input_dropout': 0.15, 'optimizer': {'lr': 0.00075, 'type': 'sgd'}}
#word2vec_hier = {'batch_norm': 'no', 'batch_size': 96.0, 'hidden_activation': 'prelu', 'hidden_dropout': 0.25, 'hidden_layers': 3.0, 'hidden_units': 256.0, 'input_dropout': 0.2, 'optimizer': {'lr': 0.0024, 'type': 'sgd'}}
#fasttext_mean = {'batch_norm': 'before_act', 'batch_size': 224.0, 'hidden_activation': 'relu', 'hidden_dropout': 0.3, 'hidden_layers': 2.0, 'hidden_units': 192.0, 'input_dropout': 0.2, 'optimizer': {'lr': 0.0032, 'type': 'sgd'}}
#fasttex_max = {'batch_norm': 'no', 'batch_size': 160.0, 'hidden_activation': 'prelu', 'hidden_dropout': 0.25, 'hidden_layers': 3.0, 'hidden_units': 128.0, 'input_dropout': 0.2, 'optimizer': {'lr': 0.00016, 'type': 'adam'}}
#fasttext_concat = {'batch_norm': 'before_act', 'batch_size': 192.0, 'hidden_activation': 'prelu', 'hidden_dropout': 0.6, 'hidden_layers': 2.0, 'hidden_units': 224.0, 'input_dropout': 0.15, 'optimizer': {'lr': 0.00048, 'type': 'adam'}}
#fasttext_hier = {'batch_norm': 'no', 'batch_size': 64.0, 'hidden_activation': 'prelu', 'hidden_dropout': 0.3, 'hidden_layers': 2.0, 'hidden_units': 128.0, 'input_dropout': 0.2, 'optimizer': {'lr': 0.00025, 'type': 'adam'}}
#doc2vec-dbow = {'batch_norm': 'no', 'batch_size': 96.0, 'hidden_activation': 'prelu', 'hidden_dropout': 0.25, 'hidden_layers': 4.0, 'hidden_units': 160.0, 'input_dropout': 0.2, 'optimizer': {'lr': 0.0017, 'type': 'sgd'}}
#doc2vec-dmpv = {'batch_norm': 'before_act', 'batch_size': 192.0, 'hidden_activation': 'relu', 'hidden_dropout': 0.25, 'hidden_layers': 4.0, 'hidden_units': 224.0, 'input_dropout': 0.2, 'optimizer': {'lr': 0.0040, 'type': 'sgd'}},
#doc2vec-concat = {'batch_norm': 'no', 'batch_size': 160.0, 'hidden_activation': 'relu', 'hidden_dropout': 0.25, 'hidden_layers': 3.0, 'hidden_units': 256.0, 'input_dropout': 0.05, 'optimizer': {'lr': 0.0025, 'type': 'sgd'}}
#sdv = {'batch_norm': 'before_act', 'batch_size': 192.0, 'hidden_activation': 'relu', 'hidden_dropout': 0.25, 'hidden_layers': 3.0, 'hidden_units': 256.0, 'input_dropout': 0.2, 'optimizer': {'lr': 0.0029, 'type': 'sgd'}}
params.update(bow)
params_MLP = dict(params)
# MLPで予測
feature = "bow"
runner = Runner(run_name='MLP1',
model_cls=ModelMLP,
features=feature,
params=params_MLP)
runner.run_train_cv()
import sys, os
sys.path.append('../')
import numpy as np
import pandas as pd
from src.runner import Runner
from src.model_NB import ModelMultinomialNB
if __name__ == '__main__':
params = {
'alpha' : 1.0,
'fit_prior' : True,
'class_prior' : None
}
#### Best Parameters
bow = { 'alpha' : 1.0 }
#tf-tdf = { 'alpha' : 1.0 }
#n-gram = { 'alpha' : 1.0 }
#ngram-tf-idf = { 'alpha' : 0.1 }
params.update(bow)
params_NB = dict(params)
# Naive Beys での分析
feature = "bow"
runner = Runner(run_name='NB1', model_cls=ModelMultinomialNB, features=feature, params=params_NB)
runner.run_train_cv()
def runner__init__(self, args):
import os
from src.bank import Bank
from src.household import Household
from src.firm import Firm
from src.environment import Environment # needed for the Directory
from src.runner import Runner
text = "This test checks runner.__init__ \n"
self.print_info(text)
#
# INITIALIZATION
#
environment_directory = str(args[0])
identifier = str(args[1])
log_directory = str(args[2])
# Configure logging parameters so we get output while the program runs
logging.basicConfig(
format="%(asctime)s %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
filename=log_directory + identifier + ".log",
level=logging.INFO,
)
logging.info("START logging for test runner__init__ in run: %s", environment_directory + identifier + ".xml")
# Construct bank filename
environment = Environment(environment_directory, identifier)
# get the bank_directory from the environment
bank_directory = environment.bank_directory
# and loop over all banks in the directory for testing purpose (just one bank)
listing = os.listdir(bank_directory)
bank_filename = bank_directory + listing[0]
# generate a household
household = Household()
household.identifier = "test_household"
environment.households.append(household)
# generate a firm
firm = Firm()
firm.identifier = "test_firm"
environment.firms.append(firm)
# generate the bank
bank = Bank()
environment.banks.append(bank)
helper = Helper()
helper.initialize_standard_bank(bank, environment)
# making an instance of the Runner class
runner = Runner(environment)
#
# TESTING
#
text = "Identifier: "
text = text + runner.get_identifier()
print(text)
text = "Number of sweeps:"
text = text + str(runner.num_sweeps)
print(text)
text = "Updater"
text = text + str(runner.updater)
print(text)
#
# INITIALIZATION
#
environment_directory = str(args[1])
identifier = str(args[2])
log_directory = str(args[3])
# Configure logging parameters so we get output while the program runs
logging.basicConfig(format='%(asctime)s %(message)s', datefmt='%m/%d/%Y %H:%M:%S',
filename=log_directory + identifier + ".log", level=logging.INFO)
logging.info('START logging for run: %s', environment_directory + identifier + ".xml")
environment = Environment(environment_directory, identifier)
runner = Runner(environment)
#
# UPDATE STEP
#
for i in range(int(environment.num_simulations)):
logging.info(' STARTED with run %s', str(i))
environment.initialize(environment_directory, identifier)
runner.initialize(environment)
# do the run
runner.do_run(environment)
logging.info(' DONE')
#
# MEASUREMENT AND LOGGING
#
identifier = str(args[2])
log_directory = str(args[3])
measurement_directory = str(args[4])
# Configure logging parameters so we get output while the program runs
logging.basicConfig(
format="%(asctime)s %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
filename=log_directory + identifier + ".log",
level=logging.INFO,
)
logging.info("START logging for run: %s", environment_directory + identifier + ".xml")
environment = Environment(environment_directory, identifier)
# environment.initialize(environment_directory, identifier)
runner = Runner()
measurement = Measurement()
#
# UPDATE STEP
#
for i in range(environment.static_parameters["numSimulations"]):
logging.info(" STARTED with run %s", str(i))
environment.initialize(environment_directory, identifier)
# check that environment file has been read correctly
# environment.write_environment_file(identifier)
runner.initialize(environment)
measurement.initialize() # clear the previous measurement
# do the run
runner.do_run(measurement, "info")
'lr': hp.loguniform('sgd_lr', np.log(0.00001), np.log(0.01))
}]),
'batch_size':
hp.quniform('batch_size', 32, 128, 32)
}
features = ["tf-idf", "n-gram", "n-gram-tf-idf"]
NAME = "-".join(features)
result = {}
# 1つの特徴量について探索するパラメータの組み合わせ数
max_evals = 100
# リストfeaturesの各特徴量に対して, 最良なパラメータを探索する
for i, name in enumerate(features):
train_x = Runner.load_x_train(name)
train_y = Runner.load_y_train()
skf = StratifiedKFold(n_splits=6, shuffle=True, random_state=71)
tr_idx, va_idx = list(skf.split(train_x, train_y))[0]
tr_x, va_x = train_x[tr_idx], train_x[va_idx]
tr_y, va_y = train_y[tr_idx], train_y[va_idx]
# hyperoptによるパラメータ探索の実行
trials = Trials()
history = []
fmin(objective,
param_space,
algo=tpe.suggest,
trials=trials,
max_evals=max_evals)
def main():
# =========================================
# === Settings
# =========================================
# Get logger
logger = get_logger(__name__)
logger.info('Settings')
# Get argument
parser = argparse.ArgumentParser()
parser.add_argument(
'--config', default='model_lgb_hakubishin_20200317/configs/model_0.json')
parser.add_argument("--debug", action="store_true")
args = parser.parse_args()
logger.info(f'config: {args.config}')
logger.info(f'debug: {args.debug}')
# Get config
config = json.load(open(args.config))
config.update({
'args': {
'config': args.config,
'debug': args.debug
}
})
config["model"]["model_params"]["nthread"] = cpu_count()
# Create a directory for model output
model_no = pathlib.Path(args.config).stem
model_output_dir = (
pathlib.Path(config['model_dir_name']) /
pathlib.Path(config['dataset']['output_directory']) / model_no
)
if not model_output_dir.exists():
model_output_dir.mkdir()
logger.info(f'model_output_dir: {str(model_output_dir)}')
logger.debug(f'model_output_dir exists: {model_output_dir.exists()}')
config.update({
'model_output_dir': str(model_output_dir)
})
# =========================================
# === Loading features
# =========================================
logger.info('Loading features')
logger.info(f'targets: {config["target"]}')
logger.info(f'features: {config["features"]}')
# features
x_train = FeatureLoader(
data_type="training", debugging=args.debug
).load_features(config["features"])
# targets
y_train_set = FeatureLoader(
data_type="training", debugging=args.debug
).load_features(config["target"])
# folds
folds_train = FeatureLoader(
data_type="training", debugging=args.debug
).load_features(config["folds"])
logger.debug(f'y_train_set: {y_train_set.shape}')
logger.debug(f'x_train: {x_train.shape}')
# =========================================
# === Train model and predict
# =========================================
logger.info('Train model and predict')
# Get target values
y_train = y_train_set["Target_answered_correctly"].values
# Get folds
trn_idx = folds_train.query("Fold_val != 1").index
val_idx = folds_train.query("Fold_val == 1").index
folds_ids = [(trn_idx, val_idx)]
logger.debug(f"n_trn={len(trn_idx)}, n_val={len(val_idx)}")
logger.debug(f"trn_pos={y_train[trn_idx].sum()}, val_pos={y_train[val_idx].sum()}")
# Train and predict
model_cls = model_map[config['model']['name']]
model_params = config['model']
runner = Runner(
model_cls, model_params, model_output_dir, f'{model_cls.__name__}', n_fold=1,
)
oof_preds, evals_result, importances = runner.train_cv(
x_train, y_train, folds_ids)
config.update(evals_result)
# Save importances
importances.mean(axis=1).reset_index().rename(
columns={"index": "feature", 0: "value"}
).sort_values("value", ascending=False).to_csv(
model_output_dir / "importances.csv", index=False
)
# Save oof-pred file
oof_preds_file_name = f"oof_pred"
np.save(model_output_dir / oof_preds_file_name, oof_preds)
logger.info(f'Save oof-pred file: {model_output_dir/ oof_preds_file_name}')
# Save files (override)
logger.info('Save files')
save_path = model_output_dir / 'output.json'
json_dump(config, save_path)
logger.info(f'Save model log: {save_path}')
# =========================================
# === Upload to GCS
# =========================================
if not args.debug:
logger.info('Upload to GCS')
bucket_dir_name = config["model_dir_name"] + "/" + model_no
logger.info(f'bucket_dir_name: {bucket_dir_name}')
files = list(model_output_dir.iterdir())
upload_to_gcs(bucket_dir_name, files)
import sys, os
sys.path.append('../')
import numpy as np
import pandas as pd
from src.runner import Runner
from src.model_GaussNB import ModelGaussNB
if __name__ == '__main__':
params = {'priors': None, 'var_smoothing': 1e-09}
params_NB = dict(params)
# 特徴量を指定して実行
feature = "bow"
runner = Runner(run_name='GNB1',
model_cls=ModelGaussNB,
features=feature,
params=params_NB)
# 1回だけ実行
# runner.train_fold(0)
# クロスバリデーションで実行
runner.run_train_cv()
def main():
# =========================================
# === Settings
# =========================================
# Get logger
logger = get_logger(__name__)
logger.info('Settings')
# Get argument
parser = argparse.ArgumentParser()
parser.add_argument('--config', default='./configs/model_0.json')
parser.add_argument("--debug", action="store_true")
args = parser.parse_args()
logger.info(f'config: {args.config}')
logger.info(f'debug: {args.debug}')
# Get config
config = json.load(open(args.config))
config.update({'args': {'config': args.config, 'debug': args.debug}})
if config["model"]["name"] == "lightgbm":
config["model"]["model_params"]["nthread"] = cpu_count()
# Create a directory for model output
model_no = pathlib.Path(args.config).stem
model_output_dir = (pathlib.Path(config['dataset']['output_directory']) /
model_no)
if not model_output_dir.exists():
model_output_dir.mkdir()
logger.info(f'model_output_dir: {str(model_output_dir)}')
logger.debug(f'model_output_dir exists: {model_output_dir.exists()}')
config.update({'model_output_dir': str(model_output_dir)})
# =========================================
# === Loading data
# =========================================
logger.info('Loading data')
# Get train and test
input_dir = pathlib.Path(config['dataset']['input_directory'])
train = pd.read_csv(input_dir / 'train.csv')
test = pd.read_csv(input_dir / 'test.csv')
# Get target values
target_column = config['data_type']['target']
y_train = train[target_column].values
# =========================================
# === Loading features
# =========================================
logger.info('Loading features')
# Get features
x_train, x_test = load_features(config)
feature_name = x_test.columns
logger.debug(f'number of features: {len(feature_name)}')
# =========================================
# === Adversarial Validation
# =========================================
logger.info("adversarial validation")
train_adv = x_train
test_adv = x_test
train_adv['target'] = 0
test_adv['target'] = 1
train_test_adv = pd.concat([train_adv, test_adv], axis=0,
sort=False).reset_index(drop=True)
target = train_test_adv['target'].values
train_set, val_set = train_test_split(train_test_adv,
test_size=0.33,
random_state=71,
shuffle=True)
x_train_adv = train_set[feature_name]
y_train_adv = train_set['target']
x_val_adv = val_set[feature_name]
y_val_adv = val_set['target']
logger.debug(f'the number of train set: {len(x_train_adv)}')
logger.debug(f'the number of valid set: {len(x_val_adv)}')
train_lgb = lgb.Dataset(x_train_adv, label=y_train_adv)
val_lgb = lgb.Dataset(x_val_adv, label=y_val_adv)
lgb_model_params = config["adversarial_validation"]["lgb_model_params"]
lgb_train_params = config["adversarial_validation"]["lgb_train_params"]
clf = lgb.train(lgb_model_params,
train_lgb,
valid_sets=[train_lgb, val_lgb],
valid_names=['train', 'valid'],
**lgb_train_params)
feature_imp = pd.DataFrame(sorted(
zip(clf.feature_importance(importance_type='gain'), feature_name)),
columns=['value', 'feature'])
plt.figure(figsize=(20, 10))
sns.barplot(x='value',
y='feature',
data=feature_imp.sort_values(by='value',
ascending=False).head(20))
plt.title('LightGBM Features')
plt.tight_layout()
plt.savefig(model_output_dir / "feature_importance_adv.png")
config.update({
'adversarial_validation_result': {
'score':
clf.best_score,
'feature_importances':
feature_imp.set_index("feature").sort_values(
by="value", ascending=False).head(20).to_dict()["value"]
}
})
# =========================================
# === Train model and predict
# =========================================
logger.info('Train model and predict')
# Get features
x_train, x_test = load_features(config)
feature_name = x_test.columns
logger.debug(f'number of features: {len(feature_name)}')
# Get folds
folds_ids = Fold(
n_splits=config['cv']['n_splits'],
shuffle=config['cv']['shuffle'],
random_state=config['cv']['random_state']).get_stratifiedkfold(
x_train, y_train)
# Train and predict
model_name = config['model']['name']
model_cls = model_map[model_name]
params = config['model']
runner = Runner(model_cls, params, model_output_dir,
f'Train_{model_cls.__name__}')
oof_preds, evals_result = runner.train_cv(x_train, y_train, folds_ids)
config.update(evals_result)
test_preds = runner.predict_cv(x_test)
# =========================================
# === Make submission file
# =========================================
sub = create_submission(test, test_preds, target_column)
sub.to_csv(model_output_dir / 'submission.csv', index=False, header=True)
# =========================================
# === Save files
# =========================================
save_path = model_output_dir / 'output.json'
json_dump(config, save_path)
pd.DataFrame(oof_preds,
columns=["target"]).to_csv(model_output_dir / 'oof.csv',
index=False,
header=True)
# load neighbourhood data
with open('parameters/lock_down/neighbourhood_data.json') as json_file:
neighbourhood_data = json.load(json_file)
# load age data
age_distribution = pd.read_csv('age_dist.csv', sep=';', index_col=0)
age_distribution_per_ward = dict(age_distribution.transpose())
# Monte Carlo simulation
for seed in range(parameters['monte_carlo_runs']):
# make new folder for seed, if it does not exist
if not os.path.exists('measurement/lockdown/seed{}'.format(seed)):
os.makedirs('measurement/lockdown/seed{}'.format(seed))
# initialization
environment = EnvironmentNetwork(seed, parameters, neighbourhood_data, age_distribution_per_ward)
# running the simulation
runner = Runner()
runner.lock_down(environment, seed)
# save network
if not parameters["high_performance"]:
for idx, network in enumerate(environment.infection_states):
for i, node in enumerate(network.nodes):
network.nodes[i]['agent'] = network.nodes[i]['agent'].status
idx_string = '{0:04}'.format(idx)
nx.write_graphml_lxml(network, "measurement/lockdown/seed{}/network_time{}.graphml".format(seed, idx_string))
# Dataset1 mfccの主成分分析
import os, sys
sys.path.append('../')
import numpy as np
import pandas as pd
from sklearn.decomposition import PCA
from sklearn.preprocessing import StandardScaler
import matplotlib.pyplot as plt
import seaborn as sns
from src.runner import Runner
X = Runner.load_x_train(["mfcc"])
print(X.shape)
#標準化
scaler = StandardScaler()
scaler.fit(X)
standard_X = scaler.transform(X)
# 12次元 -> 6次元 へ落とす.
dim = 6
params = {
'n_components': dim,
'random_state': 71,
}
# 主成分分析
clf = PCA(**params)
clf.fit(standard_X)
pca = clf.transform(standard_X)