def test_directions(self):
tester = app.test_client(self)
response = tester.get(
'/api/v1/directions?filename=TEST-DO-NOT-UPDATE-DELETE',
content_type='application/json')
self.assertEqual(response.status_code, 200)
resp = json.loads(response.data)
self.assertEqual(resp['data'], testResponseData)
def test_directions_not_found(self):
tester = app.test_client(self)
response = tester.get('/api/v1/path', content_type='application/json')
self.assertEqual(response.status_code, 404)
resp = json.loads(response.data)
self.assertEqual(resp['message'],
'The route you requested for was not found')
self.assertEqual(resp['status'], 404)
def test_directions_filename_required(self):
tester = app.test_client(self)
response = tester.get('/api/v1/directions',
content_type='application/json')
self.assertEqual(response.status_code, 400)
resp = json.loads(response.data)
self.assertEqual(resp['message'],
'filename is missing in the url query')
self.assertEqual(resp['status'], 400)
def test_directions_file_read_error(self):
tester = app.test_client(self)
response = tester.get('/api/v1/directions?filename=filename',
content_type='application/json')
self.assertEqual(response.status_code, 500)
resp = json.loads(response.data)
self.assertEqual(
resp['message'],
'An error occured while retrieving file or file doesn\'t exist')
self.assertEqual(resp['status'], 500)
def before_all(context):
context.app = app.test_client()
def setUp(self):
os.environ['ES_URI'] = 'http://localhost:9200/'
from src.server import app
self.es_search_response = {
"took": 4,
"timed_out": False,
"_shards": {
"total": 5,
"successful": 5,
"failed": 0
},
"hits": {
"total":
120735,
"max_score":
1.0,
"hits": [{
"_index": "searchable_items_prototype",
"_type": "searchable_item",
"_id": "yeast_S00001",
"_score": 1.0,
"_source": {
"name": "ACTin 1",
"symbol": "ACT1",
"href": "yeastgenome.org/locus/act1/overview",
"category": "gene"
}
}]
}
}
self.es_aggregation_response = {
"took": 12,
"timed_out": False,
"_shards": {
"total": 5,
"successful": 5,
"failed": 0
},
"hits": {
"total": 120735,
"max_score": 0.0,
"hits": []
},
"aggregations": {
"categories": {
"doc_count_error_upper_bound":
0,
"sum_other_doc_count":
312,
"buckets": [{
"key": "gene",
"doc_count": 6691
}, {
"key": "go",
"doc_count": 387
}, {
"key": "diseases",
"doc_count": 352
}]
}
}
}
self.index = 'searchable_items_blue'
self.search_fields = [
'id', 'name', 'gene_symbol', 'gene_synonyms', 'description',
'external_ids', 'species', 'gene_biological_process',
'gene_molecular_function', 'gene_cellular_component', 'go_type',
'go_genes', 'go_synonyms', 'disease_genes', 'disease_synonyms',
'homologs.symbol', 'homologs.panther_family'
]
self.json_response_fields = [
'name', 'gene_symbol', 'gene_synonyms', 'gene_type',
'gene_chromosomes', 'gene_chromosome_starts',
'gene_chromosome_ends', 'description', 'external_ids', 'species',
'gene_biological_process', 'gene_molecular_function',
'gene_cellular_component', 'go_type', 'go_genes', 'go_synonyms',
'disease_genes', 'disease_synonyms', 'homologs', 'category', 'href'
]
self.category_filters = {
"gene": [
'gene_type', 'gene_biological_process',
'gene_molecular_function', 'gene_cellular_component', 'species'
],
"go": ['go_type', 'go_species', 'go_genes'],
"disease": ['disease_species', 'disease_genes']
}
self.app = app.test_client()
self.app.testing = True
def setUp(self):
self.app = app.test_client()
self.app.testing = True
import json
import unittest
from src.server import app
TEST_DB = 'test.db'
class FlaskTestClient(object):
def __init__(self, app):
self.app = app
def __call__(self, environ, start_response):
environ['REMOTE_ADDR'] = environ.get('REMOTE_ADDR', '127.0.0.1')
environ['HTTP_USER_AGENT'] = environ.get('HTTP_USER_AGENT', 'Chrome')
return self.app(environ, start_response)
app.wsgi_app = FlaskTestClient(app.wsgi_app)
client = app.test_client()
client.post('/newJob', data=json.dumps({'url': "google.com"}))
if __name__ == "__main__":
unittest.main()
def client():
client = app.test_client()
yield client
def test_client():
with app.test_client() as client:
yield client
def test_client():
app.testing = True
return app.test_client()
def test_client():
from src.server import app
app.testing = True
yield app.test_client()
def setUp(self):
app.config["TESTING"] = True
app.config["WTF_CSRF_ENABLED"] = False
self.app = app.test_client()
def setUp(self):
self.test_client = app.test_client()
def setUp(self):
os.environ['ES_URI'] = 'http://localhost:9200/'
from src.server import app
self.es_search_response = {
"took": 4,
"timed_out": False,
"_shards": {
"total": 5,
"successful": 5,
"failed": 0
},
"hits": {
"total":
120735,
"max_score":
1.0,
"hits": [{
"_index": "searchable_items_prototype",
"_type": "searchable_item",
"_id": "yeast_S00001",
"_score": 1.0,
"_source": {
"name": "ACTin 1",
"symbol": "ACT1",
"href": "yeastgenome.org/locus/act1/overview",
"category": "gene"
}
}]
}
}
self.es_aggregation_response = {
"took": 12,
"timed_out": False,
"_shards": {
"total": 5,
"successful": 5,
"failed": 0
},
"hits": {
"total": 120735,
"max_score": 0.0,
"hits": []
},
"aggregations": {
"categories": {
"doc_count_error_upper_bound":
0,
"sum_other_doc_count":
312,
"buckets": [{
"key": "gene",
"doc_count": 6691
}, {
"key": "go",
"doc_count": 387
}, {
"key": "diseases",
"doc_count": 352
}]
}
}
}
self.index = 'searchable_items_prototype'
self.search_fields = [
'name', 'symbol', 'synonym', 'go_ids', 'go_names'
]
self.json_response_fields = [
'name', 'symbol', 'synonym', 'go_ids', 'go_names', 'href', 'type',
'organism'
]
self.category_filters = {
"gene": ['go_ids', 'go_names'],
"go": ['gene']
}
self.app = app.test_client()
self.app.testing = True
