def main(argv=None):
global simulate
global fp
global shut_open
global current
global x3h5capture
#parse command line options
usage = "usage: %prog [options]\nData files are written to /data/<year>/<month>/<day>/"
parser = OptionParser(usage)
parser.add_option("--detname",
action="store",
type="string",
dest="detname",
help="detector PV base")
parser.add_option("--xstart",
action="store",
type="float",
dest="xo",
help="starting X position")
parser.add_option("--xnumstep",
action="store",
type="int",
dest="Nx",
help="number of steps in X")
parser.add_option("--xstepsize",
action="store",
type="float",
dest="dx",
help="step size in X")
parser.add_option("--ystart",
action="store",
type="float",
dest="yo",
help="starting Y position")
parser.add_option("--ynumstep",
action="store",
type="int",
dest="Ny",
help="number of steps in Y")
parser.add_option("--ystepsize",
action="store",
type="float",
dest="dy",
help="step size in Y")
parser.add_option("--wait",
action="store",
type="float",
dest="stall",
help="wait at each step [seconds]")
parser.add_option("--simulate",
action="store_true",
dest="sim",
default=False,
help="simulate motor moves")
parser.add_option("--checkbeam",
action="store_true",
dest="checkbeam",
default=False,
help="only acquire when beam is on")
parser.add_option("--acqtime",
action="store",
type="float",
dest="acqt",
default=1,
help="image integration time [sec]")
parser.add_option("--acqnum",
action="store",
type="int",
dest="acqn",
default=1,
help="frames per scan point")
(options, args) = parser.parse_args()
#open log file
D0 = time.localtime()[0]
D1 = time.localtime()[1]
D2 = time.localtime()[2]
D3 = time.localtime()[3]
D4 = time.localtime()[4]
cd = os.getcwd()
filedir = '/nfs/xf05id1/data/'
if sys.argv[0][0] == '.':
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[0]+'.txt'
else:
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[5]+'.txt'
try:
os.chdir(filedir + repr(D0))
except OSError:
try:
os.mkdir(filedir + repr(D0))
except Exception:
print 'cannot create directory: ' + '/data/' + repr(D0)
sys.exit()
try:
os.chdir(filedir + repr(D0) + '/' + repr(D1))
except OSError:
try:
os.mkdir(filedir + repr(D0) + '/' + repr(D1))
except Exception:
print 'cannot create directory: ' + '/data/' + repr(
D0) + '/' + repr(D1)
sys.exit()
try:
os.chdir(filedir + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except OSError:
try:
os.mkdir(filedir + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except Exception:
print 'cannot create directory: ' + filedir + repr(
D0) + '/' + repr(D1) + '/' + repr(D2)
sys.exit()
try:
fp = open(out_filename, 'a')
except Exception:
print 'cannot open file: ' + out_filename
sys.exit()
os.chdir(cd)
fp.write('#' + ', '.join(sys.argv))
fp.write('\n')
H5path = '/epics/data/201507/300126'
#initialize PVs and callbacks
if options.detname == None:
detstr = ''
print "must provide detector pv base, e.g., 'XF:28IDA-BI{URL:01}'"
sys.exit()
else:
detstr = options.detname
xmotname = 'XF:05IDD-ES:1{Stg:Smpl1-Ax:X}'
ymotname = 'XF:05IDD-ES:1{Stg:Smpl1-Ax:Y}'
xmot = PV(xmotname + 'Mtr.VAL')
xmot_cur = PV(xmotname + 'Mtr.RBV')
ymot = PV(ymotname + 'Mtr.VAL')
ymot_cur = PV(ymotname + 'Mtr.RBV')
shut_status = PV('SR:C05-EPS{PLC:1}Shutter:Sum-Sts')
beam_current = PV('SR:C03-BI{DCCT:1}I:Total-I')
bmot_cur = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:P}Mtr.RBV')
#transmission
#check command line options
if options.yo == None:
print "must provide a starting point in the vertical"
sys.exit()
else:
yo = options.yo
if options.xo == None:
print "must provide a starting point in the horizontal"
sys.exit()
else:
xo = options.xo
if options.dx == None:
dx = 0.00000001
else:
dx = options.dx
if options.dy == None:
dy = 0.00000001
else:
dy = options.dy
if options.Nx == None:
Nx = 0
else:
Nx = options.Nx
if options.Ny == None:
Ny = 0
else:
Ny = options.Ny
if options.stall == None:
twait = 0.
else:
twait = options.stall
diode0 = PV(detstr + 'Cur:I0-I')
diode1 = PV(detstr + 'Cur:I1-I')
diode2 = PV(detstr + 'Cur:I2-I')
diode3 = PV(detstr + 'Cur:I3-I')
wb = srxslit.nsls2slit(tb='XF:05IDA-OP:1{Slt:1-Ax:T}',
bb='XF:05IDA-OP:1{Slt:1-Ax:B}',
ib='XF:05IDA-OP:1{Slt:1-Ax:I}',
ob='XF:05IDA-OP:1{Slt:1-Ax:O}')
pb = srxslit.nsls2slit(ib='XF:05IDA-OP:1{Slt:2-Ax:I}',
ob='XF:05IDA-OP:1{Slt:2-Ax:O}')
ssa = srxslit.nsls2slit(tb='XF:05IDB-OP:1{Slt:SSA-Ax:T}',
bb='XF:05IDB-OP:1{Slt:SSA-Ax:B}',
ob='XF:05IDB-OP:1{Slt:SSA-Ax:O}',
ib='XF:05IDB-OP:1{Slt:SSA-Ax:I}')
x3acq = PV('XSPRESS3-EXAMPLE:Acquire')
x3erase = PV('XSPRESS3-EXAMPLE:ERASE')
x3acqtime = PV('XSPRESS3-EXAMPLE:AcquireTime')
x3acqnum = PV('XSPRESS3-EXAMPLE:NumImages')
x3tmode = PV('XSPRESS3-EXAMPLE:TriggerMode')
x3h5path = PV('XSPRESS3-EXAMPLE:HDF5:FilePath')
x3h5fname = PV('XSPRESS3-EXAMPLE:HDF5:FileName')
x3h5fnum = PV('XSPRESS3-EXAMPLE:HDF5:FileNumber')
x3h5vdim = PV('XSPRESS3-EXAMPLE:HDF5:NumExtraDims')
x3h5size = PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeN')
x3h5d1 = PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeX')
x3h5d2 = PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeY')
#report ROIs for channels and counts at each point
x3ch1roi0min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI1_LLM')
x3ch1roi0max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI1_HLM')
x3ch1roi0ct = PV('XSPRESS3-EXAMPLE:C1_ROI1:Value_RBV')
x3ch1roi1min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI2_LLM')
x3ch1roi1max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI2_HLM')
x3ch1roi1ct = PV('XSPRESS3-EXAMPLE:C1_ROI2:Value_RBV')
x3ch1roi2min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI3_LLM')
x3ch1roi2max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI3_HLM')
x3ch1roi2ct = PV('XSPRESS3-EXAMPLE:C1_ROI3:Value_RBV')
x3ch2roi0min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI1_LLM')
x3ch2roi0max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI1_HLM')
x3ch2roi0ct = PV('XSPRESS3-EXAMPLE:C2_ROI1:Value_RBV')
x3ch2roi1min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI2_LLM')
x3ch2roi1max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI2_HLM')
x3ch2roi1ct = PV('XSPRESS3-EXAMPLE:C2_ROI2:Value_RBV')
x3ch2roi2min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI3_LLM')
x3ch2roi2max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI3_HLM')
x3ch2roi2ct = PV('XSPRESS3-EXAMPLE:C2_ROI3:Value_RBV')
x3ch3roi0min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI1_LLM')
x3ch3roi0max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI1_HLM')
x3ch3roi0ct = PV('XSPRESS3-EXAMPLE:C3_ROI1:Value_RBV')
x3ch3roi1min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI2_LLM')
x3ch3roi1max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI2_HLM')
x3ch3roi1ct = PV('XSPRESS3-EXAMPLE:C3_ROI2:Value_RBV')
x3ch3roi2min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI3_LLM')
x3ch3roi2max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI3_HLM')
x3ch3roi2ct = PV('XSPRESS3-EXAMPLE:C3_ROI3:Value_RBV')
#claim ROI 4 for our own use. we will integrate over all 4096 channels.
x3ch1roi3min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI4_LLM')
x3ch1roi3max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI4_HLM')
x3ch1roi3ct = PV('XSPRESS3-EXAMPLE:C1_ROI4:Value_RBV')
x3ch2roi3min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI4_LLM')
x3ch2roi3max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI4_HLM')
x3ch2roi3ct = PV('XSPRESS3-EXAMPLE:C2_ROI4:Value_RBV')
x3ch3roi3min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI4_LLM')
x3ch3roi3max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI4_HLM')
x3ch3roi3ct = PV('XSPRESS3-EXAMPLE:C3_ROI4:Value_RBV')
xmot_cur.get()
ymot_cur.get()
norm0 = PV('XF:05IDD-BI:1{BPM:01}.S20')
norm1 = PV('XF:05IDD-BI:1{BPM:01}.S21')
norm2 = PV('XF:05IDD-BI:1{BPM:01}.S22')
norm3 = PV('XF:05IDD-BI:1{BPM:01}.S23')
xmot_cur.add_callback(cbfx)
ymot_cur.add_callback(cbfy)
shut_status.add_callback(cbf_shut)
beam_current.add_callback(cbf_curr)
xmot_cur.run_callbacks()
ymot_cur.run_callbacks()
shut_status.run_callbacks()
beam_current.run_callbacks()
x3h5path.put(H5path)
x3h5fname.put(repr(D3) + '_' + repr(D4) + '_')
x3h5fnum.put(0)
x3acqtime.put(options.acqt)
x3acqnum.put(options.acqn)
x3tmode.put(1)
x3ch1roi3min.put(0)
x3ch2roi3min.put(0)
x3ch3roi3min.put(0)
x3ch1roi3max.put(4096)
x3ch2roi3max.put(4096)
x3ch3roi3max.put(4096)
#h5 set up
x3h5vdim.put(2)
x3h5size.put(options.acqn)
x3h5d1.put(options.Nx + 1)
x3h5d2.put(options.Ny + 1)
str = '#NSLS-II SRX' + time.asctime()
fp.write(str)
fp.write('\n')
str = '#Start time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
str='# x: %(hs)6.4f ; y: %(vs)6.4f ; ROI1 %(roi1i)d:%(roi1a)d ; ROI2 %(roi2i)d:%(roi2a)d ; ROI3 %(roi3i)d:%(roi3a)d'%\
{"hs":xmot_cur.get(),"vs":ymot_cur.get(), 'roi1i':x3ch1roi0min.get(), 'roi1a':x3ch1roi0max.get(), 'roi2i':x3ch1roi1min.get(), 'roi2a':x3ch1roi1max.get(), 'roi3i':x3ch1roi2min.get(), 'roi3a':x3ch1roi2max.get()}
print str
fp.write(str)
fp.write('\n')
roits = x3ch3roi3ct.timestamp
str='# SSA HCEN: %(WBHC)f ; SSA HSIZE: %(WBHS)f ; SSA VCEN: %(WBVC)f ; SSA VSIZE: %(WBVS)f'%\
{"WBHC":ssa.hcen(), "WBHS":ssa.hsize(), "WBVC":ssa.vcen(), "WBVS":ssa.vsize()}
print str
fp.write(str)
fp.write('\n')
str='# Bragg: %(B)6.4f ; Energy: %(E)6.4f ; WB HCEN: %(WBHC)f ; WB HSIZE: %(WBHS)f ; WB VCEN: %(WBVC)f ; WB VSIZE: %(WBVS)f'%\
{"B":bmot_cur.get(), "E": 12398. / (2 * 3.1355 * math.sin(bmot_cur.get()/180.*3.1416)), "WBHC":wb.hcen(), "WBHS":wb.hsize(), "WBVC":wb.vcen(), "WBVS":wb.vsize()}
print str
fp.write(str)
fp.write('\n')
str = "# -------------------------------------------------------------------- "
print str
fp.write(str)
fp.write('\n')
str = '#[point #]\tX pos\t\tY pos\tch 1\t\tch 2\t\tch 3\t\tch 4\tdBPM1\t\tdBPM2\t\tdBPM3\t\tdBPM4\t\troi0\t\troi1\t\troi2\t\troi3\t\ttime'
print str
fp.write(str)
fp.write('\n')
if options.sim is True:
str = " -----simulating motor moves and bursts-----"
print str
fp.write(str)
fp.write('\n')
else:
time.sleep(2)
x3h5capture.put(1)
#number of rows and columns completed by scan
Ncol = Nrow = 0
LN = 0
#diode readback is now limiting factor for scan speed
oldsig = 0.
#when the cryocooler kicks in, the beam is unusable for ~3200sec
cryo = PV('XF:05IDA-OP:1{Mono:HDCM}T:LN2Out-I')
ct = cryo.get()
while (ct is None):
time.sleep(0.05)
ct = cryo.get()
t0 = time.time()
cryocounter = 0
shut_toggle = False
#nested loops for scanning z,x,y
for y in np.linspace(yo, yo + ((Ny) * dy), Ny + 1):
tar[1][0] = y
tar[1][1] = 1
if options.sim is False:
ymot.put(tar[1][0])
if indeadband(float(tar[1][0]), float(ymot_cur.get()), dbd) == 1:
tar[1][1] = 0
if Nrow % 2 == 0:
xs = 0. + xo
xe = ((Nx + 1) * dx) + xo - dx
xi = dx
else:
xs = ((Nx) * dx) + xo
xe = 0. + xo
xi = -dx
for x in np.linspace(xs, xe, Nx + 1):
tar[0][0] = x
tar[0][1] = 1
if indeadband(float(tar[0][0]), float(xmot_cur.get()), dbd) == 1:
tar[0][1] = 0
if options.sim is False:
xmot.put(tar[0][0])
while ((tar[0][1] == 1) or (tar[1][1] == 1)):
time.sleep(0.01)
signal0 = signal1 = signal2 = signal3 = 0.
nsig0 = nsig1 = nsig2 = nsig3 = 0.
sig0 = sig1 = sig2 = sig3 = 0.
time.sleep(twait)
while (options.checkbeam and (cryo.get() < (ct - 0.1))):
print "Stopped. Detected possible cryocooler activation."
time.sleep(1)
cryocounter = cryocounter + 1
#if the above is true for five cycles, the cryocooler was on, wait another 10min
if (options.checkbeam and cryocounter > 300):
print "Detected cryocooler activation, waiting 10min"
time.sleep(600)
cryocounter = 0
while (options.checkbeam
and (shut_open == False or beam_current == False)):
print "Stopped. Waiting for scan conditions to return to normal."
if shut_open == False:
shut_toggle = True
time.sleep(10.)
if shut_toggle == True:
print "Entering optics conditioning period. Waiting 5min"
time.sleep(300)
shut_toggle = False
if options.sim is False:
x3erase.put(1)
while signal0 == 0.:
signal0 = diode0.get()
while signal1 == 0.:
signal1 = float(diode1.get())
while (signal1 == oldsig):
time.sleep(0.05)
signal1 = diode1.get()
oldsig = signal1
while signal2 == 0.:
signal2 = diode2.get()
while signal3 == 0.:
signal3 = diode3.get()
while nsig0 == 0.:
nsig0 = float(norm0.get())
while nsig1 == 0.:
nsig1 = float(norm1.get())
while nsig2 == 0.:
nsig2 = float(norm2.get())
while nsig3 == 0.:
nsig3 = float(norm3.get())
sig0 = 0
sig1 = 0
sig2 = 0
sig3 = 0
for i in range(0, options.acqn):
x3acq.put(1)
time.sleep(options.acqt)
while (x3ch3roi3ct.get() == 0.0
or x3ch3roi3ct.timestamp == roits):
time.sleep(0.02)
roits = x3ch3roi3ct.timestamp
while (x3ch3roi3ct.timestamp == roits):
time.sleep(0.1)
sig0 = sig0 + x3ch1roi0ct.get() + x3ch2roi0ct.get(
) + x3ch3roi0ct.get()
sig1 = sig1 + x3ch1roi1ct.get() + x3ch2roi1ct.get(
) + x3ch3roi1ct.get()
sig2 = sig2 + x3ch1roi2ct.get() + x3ch2roi2ct.get(
) + x3ch3roi2ct.get()
sig3 = sig3 + x3ch1roi3ct.get() + x3ch2roi3ct.get(
) + x3ch3roi3ct.get()
roits = x3ch3roi3ct.timestamp
tn = time.time() - t0
if options.sim is False:
str = '%(X)06d %(XC)9.4f %(YC)9.4f %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e %(n0)10.7e %(n1)10.7e %(n2)10.7e %(n3)10.7e %(s0)10.7e %(s1)10.7e %(s2)10.7e %(s3)10.7e %(time)9.2f' % {
'X': Ncol,
'XC': xmot_cur.get(),
"YC": ymot_cur.get(),
"d1": float(signal0),
"d2": float(signal1),
"d3": float(signal2),
"d4": float(signal3),
'n0': nsig0,
'n1': nsig1,
'n2': nsig2,
'n3': nsig3,
"s0": sig0,
"s1": sig1,
"s2": sig2,
"s3": sig3,
"time": tn
}
print str
fp.write(str)
fp.write('\n')
else:
str = '%(X)06d %(XC)8.4f %(YC)8.4f %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e' % {
"X": int(Ncol),
"XC": tar[0][0],
"YC": tar[1][0],
"d1": float(signal0),
"d2": float(signal1),
"d3": float(signal2),
"d4": float(signal3)
}
print str
fp.write(str)
fp.write('\n')
Ncol = Ncol + 1
Nrow = Nrow + 1
str = 'End time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
fp.close()
return 0
import sys
sys.path.append('/nfs/xf05id1/src/nsls2-xf-utils')
import srxslit
import srxfe
import srxbpm
import tempdev
import srxm2
wb=srxslit.nsls2slit(tb='XF:05IDA-OP:1{Slt:1-Ax:T}',bb='XF:05IDA-OP:1{Slt:1-Ax:B}',ib='XF:05IDA-OP:1{Slt:1-Ax:I}',ob='XF:05IDA-OP:1{Slt:1-Ax:O}')
pb=srxslit.nsls2slit(ib='XF:05IDA-OP:1{Slt:2-Ax:I}',ob='XF:05IDA-OP:1{Slt:2-Ax:O}')
ssa=srxslit.nsls2slit(tb='XF:05IDB-OP:1{Slt:SSA-Ax:T}', bb='XF:05IDB-OP:1{Slt:SSA-Ax:B}', ob='XF:05IDB-OP:1{Slt:SSA-Ax:O}',ib='XF:05IDB-OP:1{Slt:SSA-Ax:I}')
m2x=srxm2.mottwin(m1='XF:05IDD-OP:1{Mir:2-Ax:XU}Mtr',m2='XF:05IDD-OP:1{Mir:2-Ax:XD}Mtr')
bpm1=srxbpm.nsls2bpm(bpm='bpm1')
bpm2=srxbpm.nsls2bpm(bpm='bpm2')
def main(argv=None):
global dbd
global simulate
global fp
global shut_open
global current
global T_stop
#parse command line options
usage = "usage: %prog [options]\nData files are written to /data/<year>/<month>/<day>/"
parser = OptionParser(usage)
parser.add_option("--wait", action="store", type="float", dest="stall", help="wait at each step [seconds]")
usage = "usage: %prog [options]\nData files are written to /data/<year>/<month>/<day>/"
parser = OptionParser(usage)
parser.add_option("--wait", action="store", type="float", dest="stall", help="wait at each step [seconds]")
parser.add_option("--config",action="store", type="string", dest="fname", help="name of config file")
parser.add_option("--simulate", action="store_true", dest="sim", default=False, help="simulate motor moves and bursting")
parser.add_option("--checkbeam", action="store_true", dest="checkbeam", default=False, help="only acquire when beam is on")
parser.add_option("--acqtime", action="store", type="float", dest="acqt", help="image integration time [sec]")
parser.add_option("--acqnum", action="store", type="int", dest="acqn", help="images to collect")
(options,args) = parser.parse_args()
#open log file
D0=time.localtime()[0]
D1=time.localtime()[1]
D2=time.localtime()[2]
D3=time.localtime()[3]
D4=time.localtime()[4]
cd=os.getcwd()
fstr='/nfs/xf05id1/data/'
if sys.argv[0][0]=='.':
out_filename=fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D0)+'_'+repr(D1)+'_'+repr(D2)+'_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[0]+'.txt'
else:
out_filename=fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D0)+'_'+repr(D1)+'_'+repr(D2)+'_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[5]+'.txt'
try:
os.chdir(fstr+repr(D0))
except OSError:
try:
os.mkdir(fstr+repr(D0))
except Exception:
print 'cannot create directory: '+fstr+repr(D0)
sys.exit()
try:
os.chdir(fstr+repr(D0)+'/'+repr(D1))
except OSError:
try:
os.mkdir(fstr+repr(D0)+'/'+repr(D1))
except Exception:
print 'cannot create directory: '+fstr+repr(D0)+'/'+repr(D1)
sys.exit()
try:
os.chdir(fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2))
except OSError:
try:
os.mkdir(fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2))
except Exception:
print 'cannot create directory: '+fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2)
sys.exit()
try:
fp=open(out_filename,'a')
except Exception:
print 'cannot open file: '+out_filename
sys.exit()
try:
os.chdir(fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'HDF5')
except OSError:
try:
os.mkdir(fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'HDF5')
except Exception:
print 'cannot create directory: '+fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'HDF5'
sys.exit()
# H5path=fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/HDF5'
H5path='/epics/data/2015-3/300198'
os.chdir(cd)
fp.write('#')
fp.write(', '.join(sys.argv))
fp.write('\n')
#open list of scan points
try:
fconfig=open(options.fname)
except Exception:
print "cannot open file containing scan points. Error opening: "+options.fname
sys.exit()
fstr='#a default string'
pN=0
angle=list()
ivu=list()
t2gap=list()
while fstr.rsplit().__len__() > 0:
if (fstr[0] is not '#'):
pN=pN+1
angle.append(fstr.rsplit()[0])
ivu.append(fstr.rsplit()[1])
t2gap.append(fstr.rsplit()[2])
fstr=fconfig.readline()
fconfig.close()
#initialize PVs and callbacks
detstr='XF:05IDA{IM:1}'
bmot = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:P}Mtr.VAL')
bmot_cur = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:P}Mtr.RBV')
bmot_stop = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:P}Mtr.STOP')
umot = PV('SR:C5-ID:G1{IVU21:1-Mtr:2}Inp:Pos')
umot_cur = PV('SR:C5-ID:G1{IVU21:1-LEnc}Gap')
umot_go = PV('SR:C5-ID:G1{IVU21:1-Mtr:2}Sw:Go')
gmot = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:X2}Mtr.VAL')
gmot_cur = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:X2}Mtr.RBV')
gmot_stop = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:X2}Mtr.STOP')
shut_status=PV('SR:C05-EPS{PLC:1}Shutter:Sum-Sts')
beam_current=PV('SR:C03-BI{DCCT:1}I:Total-I')
bragg_temp=PV('XF:05IDA-OP:1{Mono:HDCM-Ax:P}T-I')
norm0=PV('XF:05IDD-BI:1{BPM:01}.S20')
norm1=PV('XF:05IDD-BI:1{BPM:01}.S21')
norm2=PV('XF:05IDD-BI:1{BPM:01}.S22')
norm3=PV('XF:05IDD-BI:1{BPM:01}.S23')
wb=srxslit.nsls2slit(tb='XF:05IDA-OP:1{Slt:1-Ax:T}',bb='XF:05IDA-OP:1{Slt:1-Ax:B}',ib='XF:05IDA-OP:1{Slt:1-Ax:I}',ob='XF:05IDA-OP:1{Slt:1-Ax:O}')
pb=srxslit.nsls2slit(ib='XF:05IDA-OP:1{Slt:2-Ax:I}',ob='XF:05IDA-OP:1{Slt:2-Ax:O}')
ssa=srxslit.nsls2slit(tb='XF:05IDB-OP:1{Slt:SSA-Ax:T}', bb='XF:05IDB-OP:1{Slt:SSA-Ax:B}', ob='XF:05IDB-OP:1{Slt:SSA-Ax:O}',ib='XF:05IDB-OP:1{Slt:SSA-Ax:I}')
x3acq=PV('XSPRESS3-EXAMPLE:Acquire')
x3erase=PV('XSPRESS3-EXAMPLE:ERASE')
x3acqtime=PV('XSPRESS3-EXAMPLE:AcquireTime')
x3acqnum=PV('XSPRESS3-EXAMPLE:NumImages')
x3tmode=PV('XSPRESS3-EXAMPLE:TriggerMode')
x3h5path=PV('XSPRESS3-EXAMPLE:HDF5:FilePath')
x3h5fname=PV('XSPRESS3-EXAMPLE:HDF5:FileName')
x3h5fnum=PV('XSPRESS3-EXAMPLE:HDF5:FileNumber')
x3h5vdim=PV('XSPRESS3-EXAMPLE:HDF5:NumExtraDims')
x3h5size=PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeN')
x3h5d1=PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeX')
x3h5d2=PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeY')
#report ROIs for channels and counts at each point
x3ch1roi0min=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI1_LLM')
x3ch1roi0max=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI1_HLM')
x3ch1roi0ct=PV('XSPRESS3-EXAMPLE:C1_ROI1:Value_RBV')
x3ch1roi1min=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI2_LLM')
x3ch1roi1max=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI2_HLM')
x3ch1roi1ct=PV('XSPRESS3-EXAMPLE:C1_ROI2:Value_RBV')
x3ch1roi2min=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI3_LLM')
x3ch1roi2max=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI3_HLM')
x3ch1roi2ct=PV('XSPRESS3-EXAMPLE:C1_ROI3:Value_RBV')
x3ch2roi0min=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI1_LLM')
x3ch2roi0max=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI1_HLM')
x3ch2roi0ct=PV('XSPRESS3-EXAMPLE:C2_ROI1:Value_RBV')
x3ch2roi1min=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI2_LLM')
x3ch2roi1max=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI2_HLM')
x3ch2roi1ct=PV('XSPRESS3-EXAMPLE:C2_ROI2:Value_RBV')
x3ch2roi2min=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI3_LLM')
x3ch2roi2max=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI3_HLM')
x3ch2roi2ct=PV('XSPRESS3-EXAMPLE:C2_ROI3:Value_RBV')
x3ch3roi0min=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI1_LLM')
x3ch3roi0max=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI1_HLM')
x3ch3roi0ct=PV('XSPRESS3-EXAMPLE:C3_ROI1:Value_RBV')
x3ch3roi1min=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI2_LLM')
x3ch3roi1max=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI2_HLM')
x3ch3roi1ct=PV('XSPRESS3-EXAMPLE:C3_ROI2:Value_RBV')
x3ch3roi2min=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI3_LLM')
x3ch3roi2max=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI3_HLM')
x3ch3roi2ct=PV('XSPRESS3-EXAMPLE:C3_ROI3:Value_RBV')
#claim ROI 4 for our own use. we will integrate over all 4096 channels.
x3ch1roi3min=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI4_LLM')
x3ch1roi3max=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI4_HLM')
x3ch1roi3ct=PV('XSPRESS3-EXAMPLE:C1_ROI4:Value_RBV')
x3ch2roi3min=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI4_LLM')
x3ch2roi3max=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI4_HLM')
x3ch2roi3ct=PV('XSPRESS3-EXAMPLE:C2_ROI4:Value_RBV')
x3ch3roi3min=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI4_LLM')
x3ch3roi3max=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI4_HLM')
x3ch3roi3ct=PV('XSPRESS3-EXAMPLE:C3_ROI4:Value_RBV')
dett=PV('XF:05IDD-ES:1{EVR:1-Out:FP3}Src:Scale-SP')
deti=PV('XF:05IDA{IM:1}Per-SP')
detinit=PV('XF:05IDA{IM:1}Cmd:Init')
det0 = PV(detstr+'Cur:I0-I')
det1 = PV(detstr+'Cur:I1-I')
det2 = PV(detstr+'Cur:I2-I')
det3 = PV(detstr+'Cur:I3-I')
bmot.info
bmot_cur.info
bmot_stop.info
umot.info
umot_cur.info
umot_go.info
gmot.info
gmot_cur.info
gmot_stop.info
det0.info
det1.info
det2.info
det3.info
bragg_temp.info
bmot_cur.add_callback(cbfx)
bmot_cur.run_callbacks()
umot_cur.add_callback(cbfy)
umot_cur.run_callbacks()
gmot_cur.add_callback(cbfz)
gmot_cur.run_callbacks()
shut_status.add_callback(cbf_shut)
beam_current.add_callback(cbf_curr)
shut_status.run_callbacks()
beam_current.run_callbacks()
bragg_temp.add_callback(cbf_temp)
bragg_temp.run_callbacks()
x3h5path.put(H5path)
x3h5fname.put(repr(D0)+'_'+repr(D1)+'_'+repr(D2)+'_'+repr(D3)+'_'+repr(D4)+'_')
x3h5fnum.put(0)
x3acqtime.put(options.acqt)
x3acqnum.put(options.acqn)
x3tmode.put(1)
x3ch1roi3min.put(0)
x3ch2roi3min.put(0)
x3ch3roi3min.put(0)
x3ch1roi3max.put(4096)
x3ch2roi3max.put(4096)
x3ch3roi3max.put(4096)
#h5 set up
x3h5vdim.put(1)
x3h5size.put(options.acqn)
x3h5d1.put(pN)
x3h5d2.put(0)
roits=x3ch3roi3ct.timestamp
dett.put(3)
#overhead on triggering F460
deti.put(float(options.acqn)*options.acqt*.9)
detinit.put(1)
#check command line options
if options.stall == None:
twait = 0.
else:
twait = options.stall
str='#NSLS-II SRX'+time.asctime()
fp.write(str)
fp.write('\n')
str='# Start time is '+time.asctime()
print str
fp.write(str)
fp.write('\n')
if options.sim is True:
str=" -----simulating motor moves and bursts-----"
print str
fp.write(str)
fp.write('\n')
else:
x3h5capture.put(1)
dett.put(4)
time.sleep(2)
while x3h5capture.get() == 0:
time.sleep(0.5)
dett.put(3)
str='# bragg: %(br)6.4f ; undulator: %(un)6.4f ; gap: %(cg)f ; ROI1 %(roi1i)d:%(roi1a)d ; ROI2 %(roi2i)d:%(roi2a)d ; ROI3 %(roi3i)d:%(roi3a)d'%\
{"br":bmot_cur.get(),"un":umot_cur.get(), "cg":gmot_cur.get(),'roi1i':x3ch1roi0min.get(), 'roi1a':x3ch1roi0max.get(), 'roi2i':x3ch1roi1min.get(), 'roi2a':x3ch1roi1max.get(), 'roi3i':x3ch1roi2min.get(), 'roi3a':x3ch1roi2max.get()}
print str
fp.write(str)
fp.write('\n')
str="# --------------------"
print str
fp.write(str)
fp.write('\n')
str="# bragg u-gap c-gap energy I0-1 I0-2 I0-3 I0-4 time ROI-1 ROI-2 ROI-3 ROI-4 intensity"
print str
fp.write(str)
fp.write('\n')
LN=0
oldsig=det0.get()
t0=time.time()
sig0=0.
sig1=0.
sig2=0.
sig3=0.
nsig0=0.
nsig1=0.
nsig2=0.
nsig3=0.
for x in range(0,pN):
tar[0][1] = 1
tar[0][0] = float(angle[x])
tar[1][1] = 1
tar[1][0] = float(ivu[x])
tar[2][1] = 1
tar[2][0] = float(t2gap[x])
#if tar[0][0] is the original position, raise "in position" flag
if indeadband(float(tar[0][0]),float(bmot_cur.get()),dbd)==1:
tar[0][1] = 0
if indeadband(float(tar[1][0]),float(umot_cur.get()),dbd)==1:
tar[1][1] = 0
if indeadband(float(tar[2][0]),float(gmot_cur.get()),dbd)==1:
tar[2][1] = 0
if options.sim is False:
bmot.put(tar[0][0])
umot.put(tar[1][0])
gmot.put(tar[2][0])
time.sleep(1)
umot_go.put(0)
else:
tar[0][1]=0
tar[1][1]=0
tar[2][1]=0
while (tar[0][1] == 1) or (tar[1][1] == 1) or(tar[2][1] == 1):
time.sleep(0.05)
if LN > 400:
umot_go.put(0)
LN=0
else:
LN=LN+1
if options.sim is False:
time.sleep(twait)
while ( options.checkbeam and (shut_open == False or beam_current == False)) or T_stop==True:
print "Stopped. Waiting for scan conditions to return to normal."
if shut_open == False:
print "\t->shutter is closed"
elif beam_current == False:
print "\t->Ring current is below threshold"
elif T_stop==True:
print "\t->HDCM pitch motor is too hot"
else:
print "\t->why not have a nice cup of tea or hit ctrl-C?"
time.sleep(60.)
x3erase.put(1)
dett.put(4)
nsig0=norm0.get()
nsig1=norm1.get()
nsig2=norm2.get()
nsig3=norm3.get()
sig0=sig1=sig2=sig3=3
for i in range(0,options.acqn):
x3acq.put(1)
while ( x3ch3roi3ct.get()==0.0 or x3ch3roi3ct.timestamp==roits):
time.sleep(0.02)
sig0=sig0+x3ch1roi0ct.get()+x3ch2roi0ct.get()+x3ch3roi0ct.get()
sig1=sig1+x3ch1roi1ct.get()+x3ch2roi1ct.get()+x3ch3roi1ct.get()
sig2=sig2+x3ch1roi2ct.get()+x3ch2roi2ct.get()+x3ch3roi2ct.get()
sig3=sig3+x3ch1roi3ct.get()+x3ch2roi3ct.get()+x3ch3roi3ct.get()
roits=x3ch3roi3ct.timestamp
signal0=float(det1.get())
while (signal0==0.0):
signal0=float(det1.get())
# while(signal0 == oldsig):
# signal0=det0.get()
# oldsig=signal0
dett.put(3)
else:
while ( options.checkbeam and (shut_open == False or beam_current == False)):
print "Stopped. Waiting for beam to return."
time.sleep(60.)
signal0=0.
nsig1=0
nsig2=0
nsig3=0
tn=time.time()-t0
if options.sim is False:
# str=' %(B)8.4f %(U)8.4f %(G)8.3f %(E)8.2f %(C0)10.7e %(C1)10.7e %(C2)10.7e %(C3)10.7e %(T)d %(ROI1)d %(ROI2)d %(ROI3)d %(ROI4)d %(T1)10.7e'%{"B":float(bmot_cur.get()), "U":float(umot_cur.get()), "G":float(gmot_cur.get()), "C0":nsig0, "C1":nsig1, "C2":nsig2, "C3":nsig3, "ROI1":sig0,'T':tn,"ROI2":sig1,"ROI3":sig2,"ROI4":sig3,"T1":signal0,"E":12398.4 / (2 * 3.13029665951 * math.sin((bmot_cur.get()+0.323658778534)/180.*np.pi))}
str=' %(B)8.4f %(U)8.4f %(G)8.3f %(E)8.2f %(C0)10.7e %(C1)10.7e %(C2)10.7e %(C3)10.7e %(T)d %(ROI1)d %(ROI2)d %(ROI3)d %(ROI4)d %(T1)10.7e'%{"B":float(bmot_cur.get()), "U":float(umot_cur.get()), "G":float(gmot_cur.get()), "C0":nsig0, "C1":nsig1, "C2":nsig2, "C3":nsig3, "ROI1":sig0,'T':tn,"ROI2":sig1,"ROI3":sig2,"ROI4":sig3,"T1":signal0,"E":12398.4 / (2 * dSi111 * math.sin((bmot_cur.get()+dbragg)/180.*np.pi))}
print str
fp.write(str)
fp.write('\n')
else:
str=' B= %(B)8.4f U= %(U)8.4f G= %(G)8.3f : %(C0)10.7e %(C1)10.7e %(C2)10.7e %(C3)10.7e %(ROI)d %(T)d'%{"B":tar[0][0], "U":tar[1][0], "G":tar[2][0], "C0":signal0, "C1":nsig1, "C2":nsig2, "C3":nsig3, "ROI":x3ch1roi0ct.get(),'T':time.time()}
print str
fp.write(str)
fp.write('\n')
str='#End time is '+time.asctime()
print str
fp.write(str)
fp.write('\n')
fp.close()
def main(argv=None):
global simulate
global fp
global shut_open
global current
#parse command line options
usage = "usage: %prog [options]\nData files are written to /data/<year>/<month>/<day>/"
parser = OptionParser(usage)
parser.add_option("--slitname",
action="store",
type="string",
dest="motname",
help="valid options: wb, pb, ssa")
parser.add_option("--detname",
action="store",
type="string",
dest="detname",
help="detector PV base")
parser.add_option("--xstart",
action="store",
type="float",
dest="xo",
help="starting X position")
parser.add_option("--xnumstep",
action="store",
type="int",
dest="Nx",
help="number of steps in X")
parser.add_option("--xstepsize",
action="store",
type="float",
dest="dx",
help="step size in X")
parser.add_option("--ystart",
action="store",
type="float",
dest="yo",
help="starting Y position")
parser.add_option("--ynumstep",
action="store",
type="int",
dest="Ny",
help="number of steps in Y")
parser.add_option("--ystepsize",
action="store",
type="float",
dest="dy",
help="step size in Y")
parser.add_option("--hsize",
action="store",
type="float",
dest="hs",
help="slit size in horizontal")
parser.add_option("--vsize",
action="store",
type="float",
dest="vs",
help="slit size in vertical")
parser.add_option("--wait",
action="store",
type="float",
dest="stall",
help="wait at each step [seconds]")
parser.add_option("--simulate",
action="store_true",
dest="sim",
default=False,
help="simulate motor moves")
parser.add_option("--checkbeam",
action="store_true",
dest="checkbeam",
default=False,
help="only acquire when beam is on")
(options, args) = parser.parse_args()
#open log file
D0 = time.localtime()[0]
D1 = time.localtime()[1]
D2 = time.localtime()[2]
D3 = time.localtime()[3]
D4 = time.localtime()[4]
cd = os.getcwd()
filedir = '/nfs/xf05id1/data/'
if sys.argv[0][0] == '.':
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[0]+'.txt'
else:
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[5]+'.txt'
try:
os.chdir(filedir + repr(D0))
except OSError:
try:
os.mkdir(filedir + repr(D0))
except Exception:
print 'cannot create directory: ' + '/data/' + repr(D0)
sys.exit()
try:
os.chdir(filedir + repr(D0) + '/' + repr(D1))
except OSError:
try:
os.mkdir(filedir + repr(D0) + '/' + repr(D1))
except Exception:
print 'cannot create directory: ' + '/data/' + repr(
D0) + '/' + repr(D1)
sys.exit()
try:
os.chdir(filedir + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except OSError:
try:
os.mkdir(filedir + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except Exception:
print 'cannot create directory: ' + filedir + repr(
D0) + '/' + repr(D1) + '/' + repr(D2)
sys.exit()
try:
fp = open(out_filename, 'a')
except Exception:
print 'cannot open file: ' + out_filename
sys.exit()
os.chdir(cd)
fp.write(', '.join(sys.argv))
fp.write('\n')
#initialize PVs and callbacks
if options.motname == None:
# xmotstr='XF:03IDA-OP{Mon:1-Ax:P}'
xmotstr = ''
print "must provide slit pv base, e.g., 'XF:28IDA-OP:1{Slt:MB1-Ax:T}'"
sys.exit()
else:
xmotstr = options.motname
if options.detname == None:
# detstr='XF:03IDA-BI{FS:1-CAM:1}'
detstr = ''
print "must provide detector pv base, e.g., 'XF:28IDA-BI{URL:01}'"
sys.exit()
else:
detstr = options.detname
if options.motname == 'wb':
slit=srxslit.nsls2slit(ib='XF:05IDA-OP:1{Slt:1-Ax:I}',\
ob='XF:05IDA-OP:1{Slt:1-Ax:O}',tb='XF:05IDA-OP:1{Slt:1-Ax:T}',\
bb='XF:05IDA-OP:1{Slt:1-Ax:B}')
elif options.motname == 'pb':
slit = srxslit.nsls2slit(ib='XF:05IDA-OP:1{Slt:2-Ax:I}',
ob='XF:05IDA-OP:1{Slt:2-Ax:O}')
elif options.motname == 'ssa':
# slit=srxslit.nsls2slit(ib='XF:05IDB-OP:1{Slt:SSA-Ax:T}',\
# ob='XF:05IDB-OP:1{Slt:SSA-Ax:B}',tb='XF:05IDB-OP:1{Slt:SSA-Ax:O}',\
# bb='XF:05IDB-OP:1{Slt:SSA-Ax:I}')
slit=srxslit.nsls2slit(ib='XF:05IDB-OP:1{Slt:SSA-Ax:I}',\
ob='XF:05IDB-OP:1{Slt:SSA-Ax:O}',tb='XF:05IDB-OP:1{Slt:SSA-Ax:T}',\
bb='XF:05IDB-OP:1{Slt:SSA-Ax:B}')
# diode=PV('XF:05IDA{IM:1}Cur:I0-I')
diode = PV('XF:05IDD-BI:1{Mscp:1-Cam:1}Stats1:Total_RBV')
else:
print "no valid slit options found on command line"
sys.exit()
#transmission
#check command line options
if options.yo == None:
print "must provide a starting point in the vertical"
sys.exit()
else:
yo = options.yo
if options.xo == None:
print "must provide a starting point in the horizontal"
sys.exit()
else:
xo = options.xo
if options.dx == None:
dx = 0.00000001
else:
dx = options.dx
if options.dy == None:
dy = 0.00000001
else:
dy = options.dy
if options.Nx == None:
Nx = 0
else:
Nx = options.Nx
if options.Ny == None:
Ny = 0
else:
Ny = options.Ny
if options.stall == None:
twait = 0.
else:
twait = options.stall
if options.hs is not None:
if options.sim is False:
slit.hsize(options.hs)
if options.vs is not None:
if options.sim is False:
slit.vsize(options.vs)
if options.motname == 'pb' or options.motname == 'wb':
diode0 = PV(detstr + ':DataRead_Ch1')
diode1 = PV(detstr + ':DataRead_Ch2')
diode2 = PV(detstr + ':DataRead_Ch3')
diode3 = PV(detstr + ':DataRead_Ch4')
else:
diode0 = PV(detstr + ':Current1:MeanValue_RBV')
diode1 = PV(detstr + ':Current2:MeanValue_RBV')
diode2 = PV(detstr + ':Current3:MeanValue_RBV')
diode3 = PV(detstr + ':Current4:MeanValue_RBV')
traj_o_x = PV('SR:C31-{AI}Aie5-2:Offset-x-Cal')
traj_o_y = PV('SR:C31-{AI}Aie5-2:Offset-y-Cal')
traj_a_x = PV('SR:C31-{AI}Aie5-2:Angle-x-Cal')
traj_a_y = PV('SR:C31-{AI}Aie5-2:Angle-y-Cal')
shut_status = PV('SR:C05-EPS{PLC:1}Shutter:Sum-Sts')
beam_current = PV('SR:C03-BI{DCCT:1}I:Total-I')
shut_status.add_callback(cbf_shut)
beam_current.add_callback(cbf_curr)
shut_status.run_callbacks()
beam_current.run_callbacks()
str = 'Start time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
str = '#[point #]\tX pos\tY pos\tch 1\tch 2\tch 3\tch 4\tbpm ox\tbpm oy\tbpm ax\tbpm ay\tdiff h\tdiff v\tib\tob\tbb\ttp'
print str
fp.write(str)
fp.write('\n')
str='# h size: %(hs)6.3f ; v size: %(vs)6.3f ; h center: %(hc)6.3f ; v center: %(vc)6.3f'%\
{"hs":slit.hsize(),"vs":slit.vsize(),"hc":slit.hcen(),"vc":slit.vcen()}
print str
fp.write(str)
fp.write('\n')
if options.sim is True:
str = " -----simulating motor moves and bursts-----"
print str
fp.write(str)
fp.write('\n')
time.sleep(2)
#number of rows and columns completed by scan
Ncol = Nrow = 0
LN = 0
#scan direction for x
dir = 1
count = 0
sigarray = list()
#nested loops for scanning z,x,y
for y in np.linspace(yo, yo + ((Ny) * dy), Ny + 1):
sigarry = []
if Nrow % 2 == 0:
xs = 0. + xo
xe = ((Nx + 1) * dx) + xo - dx
xi = dx
else:
xs = ((Nx) * dx) + xo
xe = 0. + xo
xi = -dx
for x in np.linspace(xs, xe, Nx + 1):
if options.sim is False:
h = slit.hcen(x)
v = slit.vcen(y)
time.sleep(twait)
while (options.checkbeam
and (shut_open == False or beam_current == False)):
print "Stopped. Waiting for scan conditions to return to normal."
time.sleep(60.)
sig = 0.
if options.motname == 'ssa':
while sig == 0.:
sig = diode.get()
#sigarray.append([x,sig])
signal0 = signal1 = signal2 = signal3 = 0.
while signal0 == 0.:
signal0 = diode0.get()
while signal1 == 0.:
signal1 = diode1.get()
while signal2 == 0.:
signal2 = diode2.get()
while signal3 == 0.:
signal3 = diode3.get()
if options.sim is False:
str = '[%(X)04d] at ( %(XC)8.3f , %(YC)8.3f ): %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e %(ox)6.3f %(oy)6.3f %(ax)6.3f %(ay)6.3f %(in)7.4e %(out)7.4e %(down)7.4e %(IB)7.4e %(OB)7.4e %(TB)7.4e %(BB)7.4e' % {
"IB": slit.ibraw(),
"OB": slit.obraw(),
"BB": slit.bbraw(),
"TB": slit.tbraw(),
"down": float(sig),
"X": Ncol,
"XC": float(slit.hcen()),
"d1": float(signal0),
"d2": float(signal1),
"d3": float(signal2),
"d4": float(signal3),
'YC': float(slit.vcen()),
'ox': float(traj_o_x.get()),
'oy': float(traj_o_y.get()),
'ax': float(traj_a_x.get()),
'ay': float(traj_a_y.get()),
'in': (float(signal0) - float(signal1)) / float(signal1),
'out': (float(signal2) - float(signal3)) / float(signal3)
}
print str
fp.write(str)
fp.write('\n')
else:
str = '[%(X)04d] at ( %(XC)8.3f , %(YC)8.3f ): %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e %(ox)6.3f %(oy)6.3f %(ax)6.3f %(ay)6.3f %(down)7.4e' % {
"down": float(sig),
"X": int(Ncol),
"XC": float(x),
"d1": float(signal0),
"d2": float(signal1),
"d3": float(signal2),
"d4": float(signal3),
'YC': float(y),
'ox': float(traj_o_x.get()),
'oy': float(traj_o_y.get()),
'ax': float(traj_a_x.get()),
'ay': float(traj_a_y.get())
}
print str
fp.write(str)
fp.write('\n')
Ncol = Ncol + 1
#M=0.
#for m in range(0,len(sigarray)):
# if sigarray[m][1]>1.8e-7:
# M=M+float(sigarray[m][1])
#MX=0.
#for m in range(0,len(sigarray)):
# if sigarray[m][1]>1.8e-7:
# MX=MX+float(sigarray[m][0])*float(sigarray[m][1])
#str="CoM detected at %6.3e"%(MX/M)
#print str
#fp.write(str)
#fp.write('\n')
Nrow = Nrow + 1
str = 'End time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
fp.close()
if options.sim is False:
slit.hcen(xo)
slit.vcen(yo)
return 0
def main(argv=None):
global simulate
global fp
global shut_open
global current
global x3h5capture
global xmot_cur
global ymot_cur
global shut_status
global beam_current
#parse command line options
usage = "usage: %prog [options]\nData files are written to /data/<year>/<month>/<day>/"
parser = OptionParser(usage)
parser.add_option("--detname", action="store", type="string", dest="detname", help="detector PV base")
parser.add_option("--xstart", action="store", type="float", dest="xo", help="starting X position")
parser.add_option("--xnumstep", action="store", type="int", dest="Nx", help="number of steps in X")
parser.add_option("--xstepsize", action="store", type="float", dest="dx", help="step size in X")
parser.add_option("--ystart", action="store", type="float", dest="yo", help="starting Y position")
parser.add_option("--ynumstep", action="store", type="int", dest="Ny", help="number of steps in Y")
parser.add_option("--ystepsize", action="store", type="float", dest="dy", help="step size in Y")
parser.add_option("--wait", action="store", type="float", dest="stall", help="wait at each step [seconds]")
parser.add_option("--simulate", action="store_true", dest="sim", default=False, help="simulate motor moves")
parser.add_option("--checkbeam", action="store_true", dest="checkbeam", default=False, help="only acquire when beam is on")
parser.add_option("--checkcryo", action="store_true", dest="checkcryo", default=False, help="only acquire when cryo status is ok")
parser.add_option("--acqtime", action="store", type="float", dest="acqt", default=1, help="image integration time [sec]")
parser.add_option("--acqnum", action="store", type="int", dest="acqn", default=1, help="frames per scan point")
(options,args) = parser.parse_args()
#open log file
D0=time.localtime()[0]
D1=time.localtime()[1]
D2=time.localtime()[2]
D3=time.localtime()[3]
D4=time.localtime()[4]
cd=os.getcwd()
filedir = '/nfs/xf05id1/data/'
if sys.argv[0][0]=='.':
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D1)+'_'+repr(D2)+'_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[0]+'.txt'
else:
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D1)+'_'+repr(D2)+'_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[5]+'.txt'
try:
os.chdir(filedir+repr(D0))
except OSError:
try:
os.mkdir(filedir+repr(D0))
except Exception:
print 'cannot create directory: '+'/data/'+repr(D0)
sys.exit()
try:
os.chdir(filedir+repr(D0)+'/'+repr(D1))
except OSError:
try:
os.mkdir(filedir+repr(D0)+'/'+repr(D1))
except Exception:
print 'cannot create directory: '+'/data/'+repr(D0)+'/'+repr(D1)
sys.exit()
try:
os.chdir(filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2))
except OSError:
try:
os.mkdir(filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2))
except Exception:
print 'cannot create directory: '+filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)
sys.exit()
try:
fp=open(out_filename,'a')
except Exception:
print 'cannot open file: '+out_filename
sys.exit()
os.chdir(cd)
fp.write('#'+', '.join(sys.argv))
fp.write('\n')
H5path='/epics/data/2015-3/in-house'
#H5path='/epics/data/2015-2/testing'
#initialize PVs and callbacks
if options.detname == None:
detstr=''
print "must provide detector pv base, e.g., 'XF:28IDA-BI{URL:01}'"
sys.exit()
else:
detstr=options.detname
##### original script for Aerotech stages
# xmotname='XF:05IDD-ES:1{Stg:Smpl1-Ax:X}'
# ymotname='XF:05IDD-ES:1{Stg:Smpl1-Ax:Y}'
# xmot=PV(xmotname+'Mtr.VAL')
# xmot_cur=PV(xmotname+'Mtr.RBV')
# ymot=PV(ymotname+'Mtr.VAL')
# ymot_cur=PV(ymotname+'Mtr.RBV')
######
#####modified for nPoint Stages
# xmot=PV('NPOINT:CH1:SET_POSITION.A',connection_timeout=2)
# xmot_cur=PV('NPOINT:CH1:GET_POSITION',connection_timeout=2)
# ymot=PV('NPOINT:CH2:SET_POSITION.A',connection_timeout=2)
# ymot_cur=PV('NPOINT:CH2:GET_POSITION',connection_timeout=2)
#####modified for HR coarse Stages; X=Attocube ECS505 X, Y=Attocube ECS505 Z
xmot=PV('XF:05IDD-ES:1{Stg:Ecs50}:ACT0:CMD:TARGET',connection_timeout=2)
xmot_cur=PV('XF:05IDD-ES:1{Stg:Ecs50}:ACT0:POSITION',connection_timeout=2)
ymot=PV('XF:05IDD-ES:1{Stg:Ecs50}:ACT1:CMD:TARGET',connection_timeout=2)
ymot_cur=PV('XF:05IDD-ES:1{Stg:Ecs50}:ACT1:POSITION',connection_timeout=2)
#####
shut_status=PV('SR:C05-EPS{PLC:1}Shutter:Sum-Sts',connection_timeout=2)
beam_current=PV('SR:C03-BI{DCCT:1}I:Total-I',connection_timeout=2)
bmot_cur=PV('XF:05IDA-OP:1{Mono:HDCM-Ax:P}Mtr.RBV',connection_timeout=2)
#transmission
#check command line options
if options.yo == None:
print "must provide a starting point in the vertical"
sys.exit()
else:
yo = options.yo
if options.xo == None:
print "must provide a starting point in the horizontal"
sys.exit()
else:
xo = options.xo
if options.dx == None:
dx = 0.00000001
else:
dx = options.dx
if options.dy == None:
dy = 0.00000001
else:
dy = options.dy
if options.Nx == None:
Nx = 0
else:
Nx = options.Nx
if options.Ny == None:
Ny = 0
else:
Ny = options.Ny
if options.stall == None:
twait = 0.
else:
twait = options.stall
diode0=PV(detstr+'Cur:I0-I',connection_timeout=4)
diode1=PV(detstr+'Cur:I1-I',connection_timeout=4)
diode2=PV(detstr+'Cur:I2-I',connection_timeout=4)
diode3=PV(detstr+'Cur:I3-I',connection_timeout=4)
diode0.connect()
diode1.connect()
diode2.connect()
diode3.connect()
dett=PV('XF:05IDD-ES:1{EVR:1-Out:FP3}Src:Scale-SP',connection_timeout=2)
deti=PV('XF:05IDA{IM:1}Per-SP',connection_timeout=4)
detinit=PV('XF:05IDA{IM:1}Cmd:Init',connection_timeout=4)
wb=srxslit.nsls2slit(tb='XF:05IDA-OP:1{Slt:1-Ax:T}',bb='XF:05IDA-OP:1{Slt:1-Ax:B}',ib='XF:05IDA-OP:1{Slt:1-Ax:I}',ob='XF:05IDA-OP:1{Slt:1-Ax:O}')
pb=srxslit.nsls2slit(ib='XF:05IDA-OP:1{Slt:2-Ax:I}',ob='XF:05IDA-OP:1{Slt:2-Ax:O}')
ssa=srxslit.nsls2slit(tb='XF:05IDB-OP:1{Slt:SSA-Ax:T}', bb='XF:05IDB-OP:1{Slt:SSA-Ax:B}', ob='XF:05IDB-OP:1{Slt:SSA-Ax:O}',ib='XF:05IDB-OP:1{Slt:SSA-Ax:I}')
x3acq=PV('XSPRESS3-EXAMPLE:Acquire',connection_timeout=2)
x3erase=PV('XSPRESS3-EXAMPLE:ERASE',connection_timeout=2)
x3acqtime=PV('XSPRESS3-EXAMPLE:AcquireTime',connection_timeout=2)
x3acqnum=PV('XSPRESS3-EXAMPLE:NumImages',connection_timeout=2)
x3tmode=PV('XSPRESS3-EXAMPLE:TriggerMode',connection_timeout=2)
x3h5path=PV('XSPRESS3-EXAMPLE:HDF5:FilePath',connection_timeout=2)
x3h5fname=PV('XSPRESS3-EXAMPLE:HDF5:FileName',connection_timeout=2)
x3h5fnum=PV('XSPRESS3-EXAMPLE:HDF5:FileNumber',connection_timeout=2)
x3h5vdim=PV('XSPRESS3-EXAMPLE:HDF5:NumExtraDims',connection_timeout=2)
x3h5size=PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeN',connection_timeout=2)
x3h5d1=PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeX',connection_timeout=2)
x3h5d2=PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeY',connection_timeout=2)
#report ROIs for channels and counts at each point
x3ch1roi0min=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI1_LLM',connection_timeout=2)
x3ch1roi0max=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI1_HLM',connection_timeout=2)
x3ch1roi0ct=PV('XSPRESS3-EXAMPLE:C1_ROI1:Value_RBV',connection_timeout=2)
x3ch1roi1min=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI2_LLM',connection_timeout=2)
x3ch1roi1max=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI2_HLM',connection_timeout=2)
x3ch1roi1ct=PV('XSPRESS3-EXAMPLE:C1_ROI2:Value_RBV',connection_timeout=2)
x3ch1roi2min=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI3_LLM',connection_timeout=2)
x3ch1roi2max=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI3_HLM',connection_timeout=2)
x3ch1roi2ct=PV('XSPRESS3-EXAMPLE:C1_ROI3:Value_RBV',connection_timeout=2)
x3ch2roi0min=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI1_LLM',connection_timeout=2)
x3ch2roi0max=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI1_HLM',connection_timeout=2)
x3ch2roi0ct=PV('XSPRESS3-EXAMPLE:C2_ROI1:Value_RBV',connection_timeout=2)
x3ch2roi1min=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI2_LLM',connection_timeout=2)
x3ch2roi1max=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI2_HLM',connection_timeout=2)
x3ch2roi1ct=PV('XSPRESS3-EXAMPLE:C2_ROI2:Value_RBV',connection_timeout=2)
x3ch2roi2min=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI3_LLM',connection_timeout=2)
x3ch2roi2max=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI3_HLM',connection_timeout=2)
x3ch2roi2ct=PV('XSPRESS3-EXAMPLE:C2_ROI3:Value_RBV',connection_timeout=2)
x3ch3roi0min=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI1_LLM',connection_timeout=2)
x3ch3roi0max=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI1_HLM',connection_timeout=2)
x3ch3roi0ct=PV('XSPRESS3-EXAMPLE:C3_ROI1:Value_RBV',connection_timeout=2)
x3ch3roi1min=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI2_LLM',connection_timeout=2)
x3ch3roi1max=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI2_HLM',connection_timeout=2)
x3ch3roi1ct=PV('XSPRESS3-EXAMPLE:C3_ROI2:Value_RBV',connection_timeout=2)
x3ch3roi2min=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI3_LLM',connection_timeout=2)
x3ch3roi2max=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI3_HLM',connection_timeout=2)
x3ch3roi2ct=PV('XSPRESS3-EXAMPLE:C3_ROI3:Value_RBV',connection_timeout=2)
#claim ROI 4 for our own use. we will integrate over all 4096 channels.
x3ch1roi3min=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI4_LLM',connection_timeout=2)
x3ch1roi3max=PV('XSPRESS3-EXAMPLE:C1_MCA_ROI4_HLM',connection_timeout=2)
x3ch1roi3ct=PV('XSPRESS3-EXAMPLE:C1_ROI4:Value_RBV',connection_timeout=2)
x3ch2roi3min=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI4_LLM',connection_timeout=2)
x3ch2roi3max=PV('XSPRESS3-EXAMPLE:C2_MCA_ROI4_HLM',connection_timeout=2)
x3ch2roi3ct=PV('XSPRESS3-EXAMPLE:C2_ROI4:Value_RBV',connection_timeout=2)
x3ch3roi3min=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI4_LLM',connection_timeout=2)
x3ch3roi3max=PV('XSPRESS3-EXAMPLE:C3_MCA_ROI4_HLM',connection_timeout=2)
x3ch3roi3ct=PV('XSPRESS3-EXAMPLE:C3_ROI4:Value_RBV',connection_timeout=2)
# xmot_cur.get()
xmot_cur.connect()
# ymot_cur.get()
ymot_cur.connect()
norm0=PV('XF:05IDD-BI:1{BPM:01}.S20',connection_timeout=2)
norm1=PV('XF:05IDD-BI:1{BPM:01}.S21',connection_timeout=2)
norm2=PV('XF:05IDD-BI:1{BPM:01}.S22',connection_timeout=2)
norm3=PV('XF:05IDD-BI:1{BPM:01}.S23',connection_timeout=2)
xmot_cur.add_callback(cbfx)
ymot_cur.add_callback(cbfy)
shut_status.add_callback(cbf_shut)
beam_current.add_callback(cbf_curr)
xmot_cur.run_callbacks()
ymot_cur.run_callbacks()
shut_status.run_callbacks()
beam_current.run_callbacks()
x3h5path.put(H5path)
x3h5fname.put(repr(D0)+'_'+repr(D1)+'_'+repr(D2)+'_'+repr(D3)+'_'+repr(D4)+'_')
x3h5fnum.put(0)
x3acqtime.put(options.acqt)
x3acqnum.put(options.acqn)
x3tmode.put(1)
x3ch1roi3min.put(0)
x3ch2roi3min.put(0)
x3ch3roi3min.put(0)
x3ch1roi3max.put(4096)
x3ch2roi3max.put(4096)
x3ch3roi3max.put(4096)
#h5 set up
x3h5vdim.put(2)
x3h5size.put(options.acqn)
x3h5d1.put(options.Nx+1)
x3h5d2.put(options.Ny+1)
dett.put(3)
#overhead on triggering F460
deti.put(float(options.acqn)*options.acqt*1.)
detinit.put(1)
#ring buffer and PV for tracking ion chamber value
ic_hist=collections.deque(maxlen=50)
ic_hist.append(0.)
v19st=PV('XF:05IDA-UT{Cryo:1-IV:19}Pos-I',connection_timeout=4)
v19st.connect()
str='#NSLS-II SRX'+time.asctime()
fp.write(str)
fp.write('\n')
str='#Start time is '+time.asctime()
print str
fp.write(str)
fp.write('\n')
str='# x: %(hs)6.4f ; y: %(vs)6.4f ; ROI1 %(roi1i)d:%(roi1a)d ; ROI2 %(roi2i)d:%(roi2a)d ; ROI3 %(roi3i)d:%(roi3a)d'%\
{"hs":xmot_cur.get(),"vs":ymot_cur.get(), 'roi1i':x3ch1roi0min.get(), 'roi1a':x3ch1roi0max.get(), 'roi2i':x3ch1roi1min.get(), 'roi2a':x3ch1roi1max.get(), 'roi3i':x3ch1roi2min.get(), 'roi3a':x3ch1roi2max.get()}
print str
fp.write(str)
fp.write('\n')
roits=x3ch3roi3ct.timestamp
str='# SSA HCEN: %(WBHC)f ; SSA HSIZE: %(WBHS)f ; SSA VCEN: %(WBVC)f ; SSA VSIZE: %(WBVS)f'%\
{"WBHC":ssa.hcen(), "WBHS":ssa.hsize(), "WBVC":ssa.vcen(), "WBVS":ssa.vsize()}
print str
fp.write(str)
fp.write('\n')
str='# Bragg: %(B)6.4f ; Energy: %(E)6.4f ; WB HCEN: %(WBHC)f ; WB HSIZE: %(WBHS)f ; WB VCEN: %(WBVC)f ; WB VSIZE: %(WBVS)f'%\
{"B":bmot_cur.get(), "E": 12398. / (2 * 3.12964794061 * math.sin((bmot_cur.get()+0.323341791985)/180.*3.1416)), "WBHC":wb.hcen(), "WBHS":wb.hsize(), "WBVC":wb.vcen(), "WBVS":wb.vsize()}
print str
fp.write(str)
fp.write('\n')
str="# -------------------------------------------------------------------- "
print str
fp.write(str)
fp.write('\n')
str='#[point #]\tX pos\t\tY pos\tch 1\t\tch 2\t\tch 3\t\tch 4\tdBPM1\t\tdBPM2\t\tdBPM3\t\tdBPM4\t\troi0\t\troi1\t\troi2\t\troi3\t\ttime'
print str
fp.write(str)
fp.write('\n')
if options.sim is True:
str=" -----simulating motor moves and bursts-----"
print str
fp.write(str)
fp.write('\n')
else:
x3h5capture.put(1)
dett.put(4)
time.sleep(2)
thisisstupid=0
while x3h5capture.get() == 0:
time.sleep(0.5)
thisisstupid+=1
if (thisisstupid%20==0):
print "waiting for xspress3"
dett.put(3)
ic_hist.append(diode1.get())
#number of rows and columns completed by scan
Ncol=Nrow=0
LN=0
#diode readback is now limiting factor for scan speed
oldsig=0.
#when the cryocooler kicks in, the beam is unusable for ~3200sec
# cryo=PV('XF:05IDA-OP:1{Mono:HDCM}T:LN2Out-I')
# ct=cryo.get()
# while( ct is None):
# time.sleep(0.1)
# ct=cryo.get()
# print "waiting for cryocooler to respond"
t0=time.time()
cryocounter=0
shut_toggle=False
#nested loops for scanning z,x,y
for y in np.linspace(yo,yo+((Ny)*dy),Ny+1):
tar[1][0]=y
tar[1][1]=1
if options.sim is False:
ymot.put(tar[1][0])
if indeadband(float(tar[1][0]),float(ymot_cur.get()),dbd)==1:
tar[1][1] = 0
if Nrow%2==0:
xs=0.+xo
xe=((Nx+1)*dx)+xo-dx
xi=dx
else:
xs=((Nx)*dx)+xo
xe=0.+xo
xi=-dx
for x in np.linspace(xs,xe,Nx+1):
tar[0][0]=x
tar[0][1]=1
if indeadband(float(tar[0][0]),float(xmot_cur.get()),dbd)==1:
tar[0][1]=0
if options.sim is False:
xmot.put(tar[0][0])
while ((tar[0][1] == 1) or (tar[1][1] == 1)):
time.sleep(0.01)
signal0=signal1=signal2=signal3=0.
nsig0=nsig1=nsig2=nsig3=0.
sig0=sig1=sig2=sig3=0.
# while ( options.checkbeam and (cryo.get() < (ct - 0.1)) ):
# print "Stopped. Detected possible cryocooler activation."
# time.sleep(1)
# cryocounter=cryocounter+1
#if the above is true for five cycles, the cryocooler was on, wait another 10min
# if ( options.checkbeam and cryocounter > 300 ):
# print "Detected cryocooler activation, waiting 10min"
# time.sleep(600)
# cryocounter=0
#this is my averge IC current
tavg=np.asarray(ic_hist).mean()
#check the filling valve status and set flag high if it is open
while ( options.checkcryo and (v19st.get() > 0.)):
print "Stopped. Crycooler valve V19 is open."
cryocounter=1
time.sleep(1)
#while the ion chamber is reading less than 80% of previous history, sleep
while (cryocounter==1):
#trigger the 460 and store the ion chamber value
dett.put(4)
time.sleep(5+options.acqt)
oldsig=diode1.get()
dett.put(3)
#if the reading is less than 80% of historical value or the valve is open, sleep
#remember that the reading is negative-going
if (oldsig > (-1.*0.8*tavg)) and (v19st.get > 0.):
print "Beam current has not returned"
time.sleep(30)
else:
cryocounter=0
while ( options.checkbeam and (shut_open == False or beam_current == False)):
print "Stopped. Waiting for scan conditions to return to normal."
if shut_open==False:
shut_toggle=True
time.sleep(10.)
if shut_toggle==True:
print "Entering optics conditioning period. Waiting 5min"
time.sleep(300)
shut_toggle=False
if options.sim is False:
x3erase.put(1)
dett.put(4)
while nsig0==0.:
nsig0=float(norm0.get())
while nsig1==0.:
nsig1=float(norm1.get())
while nsig2==0.:
nsig2=float(norm2.get())
while nsig3==0.:
nsig3=float(norm3.get())
sig0=0
sig1=0
sig2=0
sig3=0
for i in range(0,options.acqn):
x3acq.put(1)
while ( x3ch3roi3ct.get()==0.0 or x3ch3roi3ct.timestamp==roits):
time.sleep(0.02)
sig0=sig0+x3ch1roi0ct.get()+x3ch2roi0ct.get()+x3ch3roi0ct.get()
sig1=sig1+x3ch1roi1ct.get()+x3ch2roi1ct.get()+x3ch3roi1ct.get()
sig2=sig2+x3ch1roi2ct.get()+x3ch2roi2ct.get()+x3ch3roi2ct.get()
sig3=sig3+x3ch1roi3ct.get()+x3ch2roi3ct.get()+x3ch3roi3ct.get()
roits=x3ch3roi3ct.timestamp
signal0=diode0.get()
if signal0==oldsig:
time.sleep(0.02)
signal0=diode0.get()
oldsig=signal0
signal1=diode1.get()
signal2=diode2.get()
signal3=diode3.get()
dett.put(3)
#populate a ring buffer with every 100th ion chamber reading
#we will use the average of this buffer to determine recovery
#from a cryocooler activation
if(Nx%100 ==0):
ic_hist.append(signal1)
time.sleep(twait)
tn=time.time()-t0
if options.sim is False:
str='%(X)06d %(XC)9.4f %(YC)9.4f %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e %(n0)10.7e %(n1)10.7e %(n2)10.7e %(n3)10.7e %(s0)10.7e %(s1)10.7e %(s2)10.7e %(s3)10.7e %(time)9.2f'%{ 'X':Ncol, 'XC':xmot_cur.get(),"YC":ymot_cur.get(), "d1":float(signal0), "d2":float(signal1), "d3":float(signal2),"d4":float(signal3), 'n0':nsig0, 'n1':nsig1, 'n2':nsig2, 'n3':nsig3, "s0":sig0,"s1":sig1,"s2":sig2,"s3":sig3, "time":tn}
print str
fp.write(str)
fp.write('\n')
else:
str='%(X)06d %(XC)8.4f %(YC)8.4f %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e'%{"X":int(Ncol),"XC":tar[0][0], "YC":tar[1][0], "d1":float(signal0), "d2":float(signal1), "d3":float(signal2),"d4":float(signal3)}
print str
fp.write(str)
fp.write('\n')
Ncol=Ncol+1
Nrow=Nrow+1
str='#End time is '+time.asctime()
print str
fp.write(str)
fp.write('\n')
fp.close()
xmot_cur.clear_callbacks()
ymot_cur.clear_callbacks()
shut_status.clear_callbacks()
beam_current.clear_callbacks()
return 0
import sys
sys.path.append('/nfs/xf05id1/src/nsls2-xf-utils')
import srxslit
import srxfe
import srxbpm
import tempdev
import srxm2
wb = srxslit.nsls2slit(tb='XF:05IDA-OP:1{Slt:1-Ax:T}',
bb='XF:05IDA-OP:1{Slt:1-Ax:B}',
ib='XF:05IDA-OP:1{Slt:1-Ax:I}',
ob='XF:05IDA-OP:1{Slt:1-Ax:O}')
pb = srxslit.nsls2slit(ib='XF:05IDA-OP:1{Slt:2-Ax:I}',
ob='XF:05IDA-OP:1{Slt:2-Ax:O}')
ssa = srxslit.nsls2slit(tb='XF:05IDB-OP:1{Slt:SSA-Ax:T}',
bb='XF:05IDB-OP:1{Slt:SSA-Ax:B}',
ob='XF:05IDB-OP:1{Slt:SSA-Ax:O}',
ib='XF:05IDB-OP:1{Slt:SSA-Ax:I}')
m2x = srxm2.mottwin(m1='XF:05IDD-OP:1{Mir:2-Ax:XU}Mtr',
m2='XF:05IDD-OP:1{Mir:2-Ax:XD}Mtr')
bpm1 = srxbpm.nsls2bpm(bpm='bpm1')
bpm2 = srxbpm.nsls2bpm(bpm='bpm2')
def main(argv=None):
global simulate
global fp
#parse command line options
usage = "usage: %prog [options]\nData files are written to /data/<year>/<month>/<day>/"
parser = OptionParser(usage)
parser.add_option("--slitname",
action="store",
type="string",
dest="motname",
help="valid options: wb, pb")
parser.add_option("--detname",
action="store",
type="string",
dest="detname",
help="detector PV base")
parser.add_option("--xstart",
action="store",
type="float",
dest="xo",
help="starting X position")
parser.add_option("--xnumstep",
action="store",
type="int",
dest="Nx",
help="number of steps in X")
parser.add_option("--xstepsize",
action="store",
type="float",
dest="dx",
help="step size in X")
parser.add_option("--ystart",
action="store",
type="float",
dest="yo",
help="starting Y position")
parser.add_option("--ynumstep",
action="store",
type="int",
dest="Ny",
help="number of steps in Y")
parser.add_option("--ystepsize",
action="store",
type="float",
dest="dy",
help="step size in Y")
parser.add_option("--hsize",
action="store",
type="float",
dest="hs",
help="slit size in horizontal")
parser.add_option("--vsize",
action="store",
type="float",
dest="vs",
help="slit size in vertical")
parser.add_option("--wait",
action="store",
type="float",
dest="stall",
help="wait at each step [seconds]")
parser.add_option("--simulate",
action="store_true",
dest="sim",
default=False,
help="simulate motor moves")
(options, args) = parser.parse_args()
#open log file
D0 = time.localtime()[0]
D1 = time.localtime()[1]
D2 = time.localtime()[2]
D3 = time.localtime()[3]
D4 = time.localtime()[4]
cd = os.getcwd()
filedir = '/nfs/xf05id1/data/'
if sys.argv[0][0] == '.':
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[0]+'.txt'
else:
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[5]+'.txt'
try:
os.chdir(filedir + repr(D0))
except OSError:
try:
os.mkdir(filedir + repr(D0))
except Exception:
print 'cannot create directory: ' + '/data/' + repr(D0)
sys.exit()
try:
os.chdir(filedir + repr(D0) + '/' + repr(D1))
except OSError:
try:
os.mkdir(filedir + repr(D0) + '/' + repr(D1))
except Exception:
print 'cannot create directory: ' + '/data/' + repr(
D0) + '/' + repr(D1)
sys.exit()
try:
os.chdir(filedir + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except OSError:
try:
os.mkdir(filedir + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except Exception:
print 'cannot create directory: ' + filedir + repr(
D0) + '/' + repr(D1) + '/' + repr(D2)
sys.exit()
try:
fp = open(out_filename, 'a')
except Exception:
print 'cannot open file: ' + out_filename
sys.exit()
os.chdir(cd)
fp.write(', '.join(sys.argv))
fp.write('\n')
#initialize PVs and callbacks
if options.motname == None:
# xmotstr='XF:03IDA-OP{Mon:1-Ax:P}'
xmotstr = ''
print "must provide slit pv base, e.g., 'XF:28IDA-OP:1{Slt:MB1-Ax:T}'"
sys.exit()
else:
xmotstr = options.motname
if options.detname == None:
# detstr='XF:03IDA-BI{FS:1-CAM:1}'
detstr = ''
print "must provide detector pv base, e.g., 'XF:28IDA-BI{URL:01}'"
sys.exit()
else:
detstr = options.detname
if options.motname == 'wb':
slit=srxslit.nsls2slit(ib='XF:05IDA-OP:1{Slt:1-Ax:I}',\
ob='XF:05IDA-OP:1{Slt:1-Ax:O}',tb='XF:05IDA-OP:1{Slt:1-Ax:T}',\
bb='XF:05IDA-OP:1{Slt:1-Ax:B}')
elif options.motname == 'pb':
slit = srxslit.nsls2slit(ib='XF:05IDA-OP:1{Slt:2-Ax:I}',
ob='XF:05IDA-OP:1{Slt:2-Ax:O}')
else:
print "no valid slit options found on command line"
sys.exit()
#transmission
#check command line options
if options.yo == None:
print "must provide a starting point in the vertical"
sys.exit()
else:
yo = options.yo
if options.xo == None:
print "must provide a starting point in the horizontal"
sys.exit()
else:
xo = options.xo
if options.dx == None:
dx = 0.00000001
else:
dx = options.dx
if options.dy == None:
dy = 0.00000001
else:
dy = options.dy
if options.Nx == None:
Nx = 0
else:
Nx = options.Nx
if options.Ny == None:
Ny = 0
else:
Ny = options.Ny
if options.stall == None:
twait = 0.
else:
twait = options.stall
if options.hs is not None:
if options.sim is False:
slit.hsize(options.hs)
if options.vs is not None:
if options.sim is False:
slit.vsize(options.vs)
diode0 = PV(detstr + ':DataRead_Ch1')
diode1 = PV(detstr + ':DataRead_Ch2')
diode2 = PV(detstr + ':DataRead_Ch3')
diode3 = PV(detstr + ':DataRead_Ch4')
traj_o_x = PV('SR:C31-{AI}Aie5-2:Offset-x-Cal')
traj_o_y = PV('SR:C31-{AI}Aie5-2:Offset-y-Cal')
traj_a_x = PV('SR:C31-{AI}Aie5-2:Angle-x-Cal')
traj_a_y = PV('SR:C31-{AI}Aie5-2:Angle-y-Cal')
str = 'Start time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
str = '#[point #]\tX pos\tY pos\tch 1\tch 2\tch 3\tch 4\tbpm ox\tbpm oy\tbpm ax\tbpm ay'
print str
fp.write(str)
fp.write('\n')
str='# h size: %(hs)6.3f ; v size: %(vs)6.3f ; h center: %(hc)6.3f ; v center: %(vc)6.3f'%\
{"hs":slit.hsize(),"vs":slit.vsize(),"hc":slit.hcen(),"vc":slit.vcen()}
print str
fp.write(str)
fp.write('\n')
if options.sim is True:
str = " -----simulating motor moves and bursts-----"
print str
fp.write(str)
fp.write('\n')
time.sleep(2)
#number of rows and columns completed by scan
Ncol = Nrow = 0
LN = 0
#scan direction for x
dir = 1
count = 0
#nested loops for scanning z,x,y
for y in frange(0, Ny * dy, dy):
if Nrow % 2 == 0:
xs = 0
xe = Nx * dx
xi = dx
else:
xs = Nx * dx
xe = 0
xi = -dx
for x in frange(xs, xe, xi):
if options.sim is False:
slit.hcen(x + xo)
slit.vcen(y + yo)
signal0 = diode0.get()
signal1 = diode1.get()
signal2 = diode2.get()
signal3 = diode3.get()
time.sleep(twait)
if options.sim is False:
str = '[%(X)04d] at ( %(XC)8.3f , %(YC)8.3f ): %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e %(ox)6.3f %(oy)6.3f %(ax)6.3f %(ay)6.3f %(in)7.4e %(out)7.4e' % {
"X": Ncol,
"XC": slit.hcen(),
"d1": signal0,
"d2": signal1,
"d3": signal2,
"d4": signal3,
'YC': slit.vcen(),
'ox': traj_o_x.get(),
'oy': traj_o_y.get(),
'ax': traj_a_x.get(),
'ay': traj_a_y.get(),
'in': (signal0 - signal1) / signal1,
'out': (signal2 - signal3) / signal3
}
print str
fp.write(str)
fp.write('\n')
else:
str = '[%(X)04d] at ( %(XC)8.3f , %(YC)8.3f ): %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e %(ox)6.3f %(oy)6.3f %(ax)6.3f %(ay)6.3f' % {
"X": Ncol,
"XC": x,
"d1": signal0,
"d2": signal1,
"d3": signal2,
"d4": signal3,
'YC': y,
'ox': traj_o_x.get(),
'oy': traj_o_y.get(),
'ax': traj_a_x.get(),
'ay': traj_a_y.get()
}
print str
fp.write(str)
fp.write('\n')
Ncol = Ncol + 1
Nrow = Nrow + 1
str = 'End time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
fp.close()
if options.sim is False:
slit.hcen(xo)
slit.vcen(yo)
return 0