def test_het_breush_pagan(self):
res = self.res
bptest = dict(statistic=0.709924388395087, pvalue=0.701199952134347, parameters=(2,), distr="f")
bp = smsdia.het_breushpagan(res.resid, res.model.exog)
compare_t_est(bp, bptest, decimal=(12, 12))
def test_het_breush_pagan(self):
res = self.res
bptest = dict(statistic=0.709924388395087, pvalue=0.701199952134347,
parameters=(2,), distr='f')
bp = smsdia.het_breushpagan(res.resid, res.model.exog)
compare_t_est(bp, bptest, decimal=(12, 12))
def test_homosked(self, variable, p):
i = 1 if type(self.columns) == str else list(
self.columns).index(variable)
result = het_breushpagan(self.resids_is, self.x_train[:, [0, i]])
if result[1] > p or result[3] > p:
print "The error variance is determined to be constant as the endogenous variable varies"
print "LM Stat: " + str(round(result[0], 4))
print "F-value: " + str(round(result[2], 4))
else:
print "The error variance changes with the endogenous variable"
print "LM Stat: " + str(round(result[0], 4))
print "F-value: " + str(round(result[2], 4))
def test_all(self):
d = macrodata.load().data
#import datasetswsm.greene as g
#d = g.load('5-1')
#growth rates
gs_l_realinv = 400 * np.diff(np.log(d['realinv']))
gs_l_realgdp = 400 * np.diff(np.log(d['realgdp']))
#simple diff, not growthrate, I want heteroscedasticity later for testing
endogd = np.diff(d['realinv'])
exogd = add_constant(np.c_[np.diff(d['realgdp']), d['realint'][:-1]],
prepend=True)
endogg = gs_l_realinv
exogg = add_constant(np.c_[gs_l_realgdp, d['realint'][:-1]],prepend=True)
res_ols = OLS(endogg, exogg).fit()
#print res_ols.params
mod_g1 = GLSAR(endogg, exogg, rho=-0.108136)
res_g1 = mod_g1.fit()
#print res_g1.params
mod_g2 = GLSAR(endogg, exogg, rho=-0.108136) #-0.1335859) from R
res_g2 = mod_g2.iterative_fit(maxiter=5)
#print res_g2.params
rho = -0.108136
# coefficient std. error t-ratio p-value 95% CONFIDENCE INTERVAL
partable = np.array([
[-9.50990, 0.990456, -9.602, 3.65e-018, -11.4631, -7.55670], # ***
[ 4.37040, 0.208146, 21.00, 2.93e-052, 3.95993, 4.78086], # ***
[-0.579253, 0.268009, -2.161, 0.0319, -1.10777, -0.0507346]]) # **
#Statistics based on the rho-differenced data:
result_gretl_g1 = dict(
endog_mean = ("Mean dependent var", 3.113973),
endog_std = ("S.D. dependent var", 18.67447),
ssr = ("Sum squared resid", 22530.90),
mse_resid_sqrt = ("S.E. of regression", 10.66735),
rsquared = ("R-squared", 0.676973),
rsquared_adj = ("Adjusted R-squared", 0.673710),
fvalue = ("F(2, 198)", 221.0475),
f_pvalue = ("P-value(F)", 3.56e-51),
resid_acf1 = ("rho", -0.003481),
dw = ("Durbin-Watson", 1.993858))
#fstatistic, p-value, df1, df2
reset_2_3 = [5.219019, 0.00619, 2, 197, "f"]
reset_2 = [7.268492, 0.00762, 1, 198, "f"]
reset_3 = [5.248951, 0.023, 1, 198, "f"]
#LM-statistic, p-value, df
arch_4 = [7.30776, 0.120491, 4, "chi2"]
#multicollinearity
vif = [1.002, 1.002]
cond_1norm = 6862.0664
determinant = 1.0296049e+009
reciprocal_condition_number = 0.013819244
#Chi-square(2): test-statistic, pvalue, df
normality = [20.2792, 3.94837e-005, 2]
#tests
res = res_g1 #with rho from Gretl
#basic
assert_almost_equal(res.params, partable[:,0], 4)
assert_almost_equal(res.bse, partable[:,1], 6)
assert_almost_equal(res.tvalues, partable[:,2], 2)
assert_almost_equal(res.ssr, result_gretl_g1['ssr'][1], decimal=2)
#assert_almost_equal(res.llf, result_gretl_g1['llf'][1], decimal=7) #not in gretl
#assert_almost_equal(res.rsquared, result_gretl_g1['rsquared'][1], decimal=7) #FAIL
#assert_almost_equal(res.rsquared_adj, result_gretl_g1['rsquared_adj'][1], decimal=7) #FAIL
assert_almost_equal(np.sqrt(res.mse_resid), result_gretl_g1['mse_resid_sqrt'][1], decimal=5)
assert_almost_equal(res.fvalue, result_gretl_g1['fvalue'][1], decimal=4)
assert_approx_equal(res.f_pvalue, result_gretl_g1['f_pvalue'][1], significant=2)
#assert_almost_equal(res.durbin_watson, result_gretl_g1['dw'][1], decimal=7) #TODO
#arch
#sm_arch = smsdia.acorr_lm(res.wresid**2, maxlag=4, autolag=None)
sm_arch = smsdia.het_arch(res.wresid, maxlag=4)
assert_almost_equal(sm_arch[0], arch_4[0], decimal=4)
assert_almost_equal(sm_arch[1], arch_4[1], decimal=6)
#tests
res = res_g2 #with estimated rho
#estimated lag coefficient
assert_almost_equal(res.model.rho, rho, decimal=3)
#basic
assert_almost_equal(res.params, partable[:,0], 4)
assert_almost_equal(res.bse, partable[:,1], 3)
assert_almost_equal(res.tvalues, partable[:,2], 2)
assert_almost_equal(res.ssr, result_gretl_g1['ssr'][1], decimal=2)
#assert_almost_equal(res.llf, result_gretl_g1['llf'][1], decimal=7) #not in gretl
#assert_almost_equal(res.rsquared, result_gretl_g1['rsquared'][1], decimal=7) #FAIL
#assert_almost_equal(res.rsquared_adj, result_gretl_g1['rsquared_adj'][1], decimal=7) #FAIL
assert_almost_equal(np.sqrt(res.mse_resid), result_gretl_g1['mse_resid_sqrt'][1], decimal=5)
assert_almost_equal(res.fvalue, result_gretl_g1['fvalue'][1], decimal=0)
assert_almost_equal(res.f_pvalue, result_gretl_g1['f_pvalue'][1], decimal=6)
#assert_almost_equal(res.durbin_watson, result_gretl_g1['dw'][1], decimal=7) #TODO
c = oi.reset_ramsey(res, degree=2)
compare_ftest(c, reset_2, decimal=(2,4))
c = oi.reset_ramsey(res, degree=3)
compare_ftest(c, reset_2_3, decimal=(2,4))
#arch
#sm_arch = smsdia.acorr_lm(res.wresid**2, maxlag=4, autolag=None)
sm_arch = smsdia.het_arch(res.wresid, maxlag=4)
assert_almost_equal(sm_arch[0], arch_4[0], decimal=1)
assert_almost_equal(sm_arch[1], arch_4[1], decimal=2)
'''
Performing iterative calculation of rho...
ITER RHO ESS
1 -0.10734 22530.9
2 -0.10814 22530.9
Model 4: Cochrane-Orcutt, using observations 1959:3-2009:3 (T = 201)
Dependent variable: ds_l_realinv
rho = -0.108136
coefficient std. error t-ratio p-value
-------------------------------------------------------------
const -9.50990 0.990456 -9.602 3.65e-018 ***
ds_l_realgdp 4.37040 0.208146 21.00 2.93e-052 ***
realint_1 -0.579253 0.268009 -2.161 0.0319 **
Statistics based on the rho-differenced data:
Mean dependent var 3.113973 S.D. dependent var 18.67447
Sum squared resid 22530.90 S.E. of regression 10.66735
R-squared 0.676973 Adjusted R-squared 0.673710
F(2, 198) 221.0475 P-value(F) 3.56e-51
rho -0.003481 Durbin-Watson 1.993858
'''
'''
RESET test for specification (squares and cubes)
Test statistic: F = 5.219019,
with p-value = P(F(2,197) > 5.21902) = 0.00619
RESET test for specification (squares only)
Test statistic: F = 7.268492,
with p-value = P(F(1,198) > 7.26849) = 0.00762
RESET test for specification (cubes only)
Test statistic: F = 5.248951,
with p-value = P(F(1,198) > 5.24895) = 0.023:
'''
'''
Test for ARCH of order 4
coefficient std. error t-ratio p-value
--------------------------------------------------------
alpha(0) 97.0386 20.3234 4.775 3.56e-06 ***
alpha(1) 0.176114 0.0714698 2.464 0.0146 **
alpha(2) -0.0488339 0.0724981 -0.6736 0.5014
alpha(3) -0.0705413 0.0737058 -0.9571 0.3397
alpha(4) 0.0384531 0.0725763 0.5298 0.5968
Null hypothesis: no ARCH effect is present
Test statistic: LM = 7.30776
with p-value = P(Chi-square(4) > 7.30776) = 0.120491:
'''
'''
Variance Inflation Factors
Minimum possible value = 1.0
Values > 10.0 may indicate a collinearity problem
ds_l_realgdp 1.002
realint_1 1.002
VIF(j) = 1/(1 - R(j)^2), where R(j) is the multiple correlation coefficient
between variable j and the other independent variables
Properties of matrix X'X:
1-norm = 6862.0664
Determinant = 1.0296049e+009
Reciprocal condition number = 0.013819244
'''
'''
Test for ARCH of order 4 -
Null hypothesis: no ARCH effect is present
Test statistic: LM = 7.30776
with p-value = P(Chi-square(4) > 7.30776) = 0.120491
Test of common factor restriction -
Null hypothesis: restriction is acceptable
Test statistic: F(2, 195) = 0.426391
with p-value = P(F(2, 195) > 0.426391) = 0.653468
Test for normality of residual -
Null hypothesis: error is normally distributed
Test statistic: Chi-square(2) = 20.2792
with p-value = 3.94837e-005:
'''
#no idea what this is
'''
Augmented regression for common factor test
OLS, using observations 1959:3-2009:3 (T = 201)
Dependent variable: ds_l_realinv
coefficient std. error t-ratio p-value
---------------------------------------------------------------
const -10.9481 1.35807 -8.062 7.44e-014 ***
ds_l_realgdp 4.28893 0.229459 18.69 2.40e-045 ***
realint_1 -0.662644 0.334872 -1.979 0.0492 **
ds_l_realinv_1 -0.108892 0.0715042 -1.523 0.1294
ds_l_realgdp_1 0.660443 0.390372 1.692 0.0923 *
realint_2 0.0769695 0.341527 0.2254 0.8219
Sum of squared residuals = 22432.8
Test of common factor restriction
Test statistic: F(2, 195) = 0.426391, with p-value = 0.653468
'''
################ with OLS, HAC errors
#Model 5: OLS, using observations 1959:2-2009:3 (T = 202)
#Dependent variable: ds_l_realinv
#HAC standard errors, bandwidth 4 (Bartlett kernel)
#coefficient std. error t-ratio p-value 95% CONFIDENCE INTERVAL
#for confidence interval t(199, 0.025) = 1.972
partable = np.array([
[-9.48167, 1.17709, -8.055, 7.17e-014, -11.8029, -7.16049], # ***
[4.37422, 0.328787, 13.30, 2.62e-029, 3.72587, 5.02258], #***
[-0.613997, 0.293619, -2.091, 0.0378, -1.19300, -0.0349939]]) # **
result_gretl_g1 = dict(
endog_mean = ("Mean dependent var", 3.257395),
endog_std = ("S.D. dependent var", 18.73915),
ssr = ("Sum squared resid", 22799.68),
mse_resid_sqrt = ("S.E. of regression", 10.70380),
rsquared = ("R-squared", 0.676978),
rsquared_adj = ("Adjusted R-squared", 0.673731),
fvalue = ("F(2, 199)", 90.79971),
f_pvalue = ("P-value(F)", 9.53e-29),
llf = ("Log-likelihood", -763.9752),
aic = ("Akaike criterion", 1533.950),
bic = ("Schwarz criterion", 1543.875),
hqic = ("Hannan-Quinn", 1537.966),
resid_acf1 = ("rho", -0.107341),
dw = ("Durbin-Watson", 2.213805))
linear_logs = [1.68351, 0.430953, 2, "chi2"]
#for logs: dropping 70 nan or incomplete observations, T=133
#(res_ols.model.exog <=0).any(1).sum() = 69 ?not 70
linear_squares = [7.52477, 0.0232283, 2, "chi2"]
#Autocorrelation, Breusch-Godfrey test for autocorrelation up to order 4
lm_acorr4 = [1.17928, 0.321197, 4, 195, "F"]
lm2_acorr4 = [4.771043, 0.312, 4, "chi2"]
acorr_ljungbox4 = [5.23587, 0.264, 4, "chi2"]
#break
cusum_Harvey_Collier = [0.494432, 0.621549, 198, "t"] #stats.t.sf(0.494432, 198)*2
#see cusum results in files
break_qlr = [3.01985, 0.1, 3, 196, "maxF"] #TODO check this, max at 2001:4
break_chow = [13.1897, 0.00424384, 3, "chi2"] # break at 1984:1
arch_4 = [3.43473, 0.487871, 4, "chi2"]
normality = [23.962, 0.00001, 2, "chi2"]
het_white = [33.503723, 0.000003, 5, "chi2"]
het_breush_pagan = [1.302014, 0.521520, 2, "chi2"] #TODO: not available
het_breush_pagan_konker = [0.709924, 0.701200, 2, "chi2"]
reset_2_3 = [5.219019, 0.00619, 2, 197, "f"]
reset_2 = [7.268492, 0.00762, 1, 198, "f"]
reset_3 = [5.248951, 0.023, 1, 198, "f"] #not available
cond_1norm = 5984.0525
determinant = 7.1087467e+008
reciprocal_condition_number = 0.013826504
vif = [1.001, 1.001]
names = 'date residual leverage influence DFFITS'.split()
cur_dir = os.path.abspath(os.path.dirname(__file__))
fpath = os.path.join(cur_dir, 'results/leverage_influence_ols_nostars.txt')
lev = np.genfromtxt(fpath, skip_header=3, skip_footer=1,
converters={0:lambda s: s})
#either numpy 1.6 or python 3.2 changed behavior
if np.isnan(lev[-1]['f1']):
lev = np.genfromtxt(fpath, skip_header=3, skip_footer=2,
converters={0:lambda s: s})
lev.dtype.names = names
res = res_ols #for easier copying
cov_hac = sw.cov_hac_simple(res, nlags=4, use_correction=False)
bse_hac = sw.se_cov(cov_hac)
assert_almost_equal(res.params, partable[:,0], 5)
assert_almost_equal(bse_hac, partable[:,1], 5)
#TODO
assert_almost_equal(res.ssr, result_gretl_g1['ssr'][1], decimal=2)
#assert_almost_equal(res.llf, result_gretl_g1['llf'][1], decimal=7) #not in gretl
assert_almost_equal(res.rsquared, result_gretl_g1['rsquared'][1], decimal=6) #FAIL
assert_almost_equal(res.rsquared_adj, result_gretl_g1['rsquared_adj'][1], decimal=6) #FAIL
assert_almost_equal(np.sqrt(res.mse_resid), result_gretl_g1['mse_resid_sqrt'][1], decimal=5)
#f-value is based on cov_hac I guess
#assert_almost_equal(res.fvalue, result_gretl_g1['fvalue'][1], decimal=0) #FAIL
#assert_approx_equal(res.f_pvalue, result_gretl_g1['f_pvalue'][1], significant=1) #FAIL
#assert_almost_equal(res.durbin_watson, result_gretl_g1['dw'][1], decimal=7) #TODO
c = oi.reset_ramsey(res, degree=2)
compare_ftest(c, reset_2, decimal=(6,5))
c = oi.reset_ramsey(res, degree=3)
compare_ftest(c, reset_2_3, decimal=(6,5))
linear_sq = smsdia.linear_lm(res.resid, res.model.exog)
assert_almost_equal(linear_sq[0], linear_squares[0], decimal=6)
assert_almost_equal(linear_sq[1], linear_squares[1], decimal=7)
hbpk = smsdia.het_breushpagan(res.resid, res.model.exog)
assert_almost_equal(hbpk[0], het_breush_pagan_konker[0], decimal=6)
assert_almost_equal(hbpk[1], het_breush_pagan_konker[1], decimal=6)
hw = smsdia.het_white(res.resid, res.model.exog)
assert_almost_equal(hw[:2], het_white[:2], 6)
#arch
#sm_arch = smsdia.acorr_lm(res.resid**2, maxlag=4, autolag=None)
sm_arch = smsdia.het_arch(res.resid, maxlag=4)
assert_almost_equal(sm_arch[0], arch_4[0], decimal=5)
assert_almost_equal(sm_arch[1], arch_4[1], decimal=6)
vif2 = [oi.variance_inflation_factor(res.model.exog, k) for k in [1,2]]
infl = oi.OLSInfluence(res_ols)
#print np.max(np.abs(lev['DFFITS'] - infl.dffits[0]))
#print np.max(np.abs(lev['leverage'] - infl.hat_matrix_diag))
#print np.max(np.abs(lev['influence'] - infl.influence)) #just added this based on Gretl
#just rough test, low decimal in Gretl output,
assert_almost_equal(lev['residual'], res.resid, decimal=3)
assert_almost_equal(lev['DFFITS'], infl.dffits[0], decimal=3)
assert_almost_equal(lev['leverage'], infl.hat_matrix_diag, decimal=3)
assert_almost_equal(lev['influence'], infl.influence, decimal=4)
def linear_model(input_data, output_data, k_value, rmse_graph):
print '============================================================================='
print 'Linear Regression Results:'
folds = k_value
#Cross validation for linear regression
from sklearn import cross_validation
kf = cross_validation.KFold(len(input_data), shuffle=True, n_folds=k_value)
totRMSE_Reg = []
# List to store all the linear regression parameters
clf1 = map(lambda x: 0, range(folds))
predict_store = []
actualy_store = []
i = 0
for train_index, test_index in kf:
X_train, X_test = input_data[train_index], input_data[test_index]
y_train, y_test = output_data[train_index], output_data[test_index]
# model calling for each algo continous
#Linear regression
from numpy.linalg import inv
import statsmodels.api as sm
import statsmodels.formula.api as smf
X1 = sm.add_constant(X_train)
model2 = sm.OLS(y_train, X1)
clf1[i] = model2.fit()
import statsmodels.regression.linear_model as srl
result = srl.RegressionResults(model2, clf1[i].params)
dot_pr = np.dot(sm.add_constant(X_test), result.params)
predict_store.append(dot_pr.tolist())
actualy_store.append(output_data[test_index].tolist())
RMSE = (np.sum(
(np.dot(sm.add_constant(X_test), result.params) - y_test)**2) /
X_test.shape[0])**.5
totRMSE_Reg.append(RMSE)
i = i + 1
RMSE_min = min(totRMSE_Reg)
RMSE_min_index = totRMSE_Reg.index(RMSE_min)
summary = raw_input(
'Need the summary of Linear Regression then give "y" or "Y":')
if (summary == 'y' or summary == 'Y'):
clf = clf1[RMSE_min_index]
print clf.summary()
#Homodescadisiticy check tests related to linear regression#
import statsmodels.stats.diagnostic as ssd
test1 = ssd.het_breushpagan(clf.resid, clf.model.exog)
test1_stat = ([
'LM stat: ', 'p-val LM test: ',
'f-stat(error var,not depend on x):', 'p-value for the f-stat :'
])
Zip_result = np.array(zip(test1_stat, test1))
print '============================================================================='
print 'Breush-pagan:\n', Zip_result.reshape(len(Zip_result), 2)
print '============================================================================='
print 'Avg. RMSE_Regression for Given K_value Folds', sum(
totRMSE_Reg) / kf.n_folds
if (rmse_graph == 1):
#graphical represenation
predict_store1 = [
item for sublist in predict_store for item in sublist
]
actualy_store1 = [
item for sublist in actualy_store for item in sublist
]
#graph values of y_predicted and actualy
import matplotlib.pyplot as plt
indices = range(len(actualy_store1))
plt.plot(indices, predict_store1, 'yo-')
plt.hold(True)
plt.text(2, 19, r'Blue=Actual,Yellow=Predicted')
plt.plot(indices, actualy_store1, 'bo-')
plt.title('Actual Vs Predcited Graph')
plt.ylabel('Target variables')
plt.xlabel('No. of Datasets')
plt.show()
def test_all(self):
d = macrodata.load().data
#import datasetswsm.greene as g
#d = g.load('5-1')
#growth rates
gs_l_realinv = 400 * np.diff(np.log(d['realinv']))
gs_l_realgdp = 400 * np.diff(np.log(d['realgdp']))
#simple diff, not growthrate, I want heteroscedasticity later for testing
endogd = np.diff(d['realinv'])
exogd = add_constant(np.c_[np.diff(d['realgdp']), d['realint'][:-1]],
prepend=True)
endogg = gs_l_realinv
exogg = add_constant(np.c_[gs_l_realgdp, d['realint'][:-1]],
prepend=True)
res_ols = OLS(endogg, exogg).fit()
#print res_ols.params
mod_g1 = GLSAR(endogg, exogg, rho=-0.108136)
res_g1 = mod_g1.fit()
#print res_g1.params
mod_g2 = GLSAR(endogg, exogg, rho=-0.108136) #-0.1335859) from R
res_g2 = mod_g2.iterative_fit(maxiter=5)
#print res_g2.params
rho = -0.108136
# coefficient std. error t-ratio p-value 95% CONFIDENCE INTERVAL
partable = np.array([
[-9.50990, 0.990456, -9.602, 3.65e-018, -11.4631, -7.55670], # ***
[4.37040, 0.208146, 21.00, 2.93e-052, 3.95993, 4.78086], # ***
[-0.579253, 0.268009, -2.161, 0.0319, -1.10777, -0.0507346]
]) # **
#Statistics based on the rho-differenced data:
result_gretl_g1 = dict(endog_mean=("Mean dependent var", 3.113973),
endog_std=("S.D. dependent var", 18.67447),
ssr=("Sum squared resid", 22530.90),
mse_resid_sqrt=("S.E. of regression", 10.66735),
rsquared=("R-squared", 0.676973),
rsquared_adj=("Adjusted R-squared", 0.673710),
fvalue=("F(2, 198)", 221.0475),
f_pvalue=("P-value(F)", 3.56e-51),
resid_acf1=("rho", -0.003481),
dw=("Durbin-Watson", 1.993858))
#fstatistic, p-value, df1, df2
reset_2_3 = [5.219019, 0.00619, 2, 197, "f"]
reset_2 = [7.268492, 0.00762, 1, 198, "f"]
reset_3 = [5.248951, 0.023, 1, 198, "f"]
#LM-statistic, p-value, df
arch_4 = [7.30776, 0.120491, 4, "chi2"]
#multicollinearity
vif = [1.002, 1.002]
cond_1norm = 6862.0664
determinant = 1.0296049e+009
reciprocal_condition_number = 0.013819244
#Chi-square(2): test-statistic, pvalue, df
normality = [20.2792, 3.94837e-005, 2]
#tests
res = res_g1 #with rho from Gretl
#basic
assert_almost_equal(res.params, partable[:, 0], 4)
assert_almost_equal(res.bse, partable[:, 1], 6)
assert_almost_equal(res.tvalues, partable[:, 2], 2)
assert_almost_equal(res.ssr, result_gretl_g1['ssr'][1], decimal=2)
#assert_almost_equal(res.llf, result_gretl_g1['llf'][1], decimal=7) #not in gretl
#assert_almost_equal(res.rsquared, result_gretl_g1['rsquared'][1], decimal=7) #FAIL
#assert_almost_equal(res.rsquared_adj, result_gretl_g1['rsquared_adj'][1], decimal=7) #FAIL
assert_almost_equal(np.sqrt(res.mse_resid),
result_gretl_g1['mse_resid_sqrt'][1],
decimal=5)
assert_almost_equal(res.fvalue,
result_gretl_g1['fvalue'][1],
decimal=4)
assert_approx_equal(res.f_pvalue,
result_gretl_g1['f_pvalue'][1],
significant=2)
#assert_almost_equal(res.durbin_watson, result_gretl_g1['dw'][1], decimal=7) #TODO
#arch
#sm_arch = smsdia.acorr_lm(res.wresid**2, maxlag=4, autolag=None)
sm_arch = smsdia.het_arch(res.wresid, maxlag=4)
assert_almost_equal(sm_arch[0], arch_4[0], decimal=4)
assert_almost_equal(sm_arch[1], arch_4[1], decimal=6)
#tests
res = res_g2 #with estimated rho
#estimated lag coefficient
assert_almost_equal(res.model.rho, rho, decimal=3)
#basic
assert_almost_equal(res.params, partable[:, 0], 4)
assert_almost_equal(res.bse, partable[:, 1], 3)
assert_almost_equal(res.tvalues, partable[:, 2], 2)
assert_almost_equal(res.ssr, result_gretl_g1['ssr'][1], decimal=2)
#assert_almost_equal(res.llf, result_gretl_g1['llf'][1], decimal=7) #not in gretl
#assert_almost_equal(res.rsquared, result_gretl_g1['rsquared'][1], decimal=7) #FAIL
#assert_almost_equal(res.rsquared_adj, result_gretl_g1['rsquared_adj'][1], decimal=7) #FAIL
assert_almost_equal(np.sqrt(res.mse_resid),
result_gretl_g1['mse_resid_sqrt'][1],
decimal=5)
assert_almost_equal(res.fvalue,
result_gretl_g1['fvalue'][1],
decimal=0)
assert_almost_equal(res.f_pvalue,
result_gretl_g1['f_pvalue'][1],
decimal=6)
#assert_almost_equal(res.durbin_watson, result_gretl_g1['dw'][1], decimal=7) #TODO
c = oi.reset_ramsey(res, degree=2)
compare_ftest(c, reset_2, decimal=(2, 4))
c = oi.reset_ramsey(res, degree=3)
compare_ftest(c, reset_2_3, decimal=(2, 4))
#arch
#sm_arch = smsdia.acorr_lm(res.wresid**2, maxlag=4, autolag=None)
sm_arch = smsdia.het_arch(res.wresid, maxlag=4)
assert_almost_equal(sm_arch[0], arch_4[0], decimal=1)
assert_almost_equal(sm_arch[1], arch_4[1], decimal=2)
'''
Performing iterative calculation of rho...
ITER RHO ESS
1 -0.10734 22530.9
2 -0.10814 22530.9
Model 4: Cochrane-Orcutt, using observations 1959:3-2009:3 (T = 201)
Dependent variable: ds_l_realinv
rho = -0.108136
coefficient std. error t-ratio p-value
-------------------------------------------------------------
const -9.50990 0.990456 -9.602 3.65e-018 ***
ds_l_realgdp 4.37040 0.208146 21.00 2.93e-052 ***
realint_1 -0.579253 0.268009 -2.161 0.0319 **
Statistics based on the rho-differenced data:
Mean dependent var 3.113973 S.D. dependent var 18.67447
Sum squared resid 22530.90 S.E. of regression 10.66735
R-squared 0.676973 Adjusted R-squared 0.673710
F(2, 198) 221.0475 P-value(F) 3.56e-51
rho -0.003481 Durbin-Watson 1.993858
'''
'''
RESET test for specification (squares and cubes)
Test statistic: F = 5.219019,
with p-value = P(F(2,197) > 5.21902) = 0.00619
RESET test for specification (squares only)
Test statistic: F = 7.268492,
with p-value = P(F(1,198) > 7.26849) = 0.00762
RESET test for specification (cubes only)
Test statistic: F = 5.248951,
with p-value = P(F(1,198) > 5.24895) = 0.023:
'''
'''
Test for ARCH of order 4
coefficient std. error t-ratio p-value
--------------------------------------------------------
alpha(0) 97.0386 20.3234 4.775 3.56e-06 ***
alpha(1) 0.176114 0.0714698 2.464 0.0146 **
alpha(2) -0.0488339 0.0724981 -0.6736 0.5014
alpha(3) -0.0705413 0.0737058 -0.9571 0.3397
alpha(4) 0.0384531 0.0725763 0.5298 0.5968
Null hypothesis: no ARCH effect is present
Test statistic: LM = 7.30776
with p-value = P(Chi-square(4) > 7.30776) = 0.120491:
'''
'''
Variance Inflation Factors
Minimum possible value = 1.0
Values > 10.0 may indicate a collinearity problem
ds_l_realgdp 1.002
realint_1 1.002
VIF(j) = 1/(1 - R(j)^2), where R(j) is the multiple correlation coefficient
between variable j and the other independent variables
Properties of matrix X'X:
1-norm = 6862.0664
Determinant = 1.0296049e+009
Reciprocal condition number = 0.013819244
'''
'''
Test for ARCH of order 4 -
Null hypothesis: no ARCH effect is present
Test statistic: LM = 7.30776
with p-value = P(Chi-square(4) > 7.30776) = 0.120491
Test of common factor restriction -
Null hypothesis: restriction is acceptable
Test statistic: F(2, 195) = 0.426391
with p-value = P(F(2, 195) > 0.426391) = 0.653468
Test for normality of residual -
Null hypothesis: error is normally distributed
Test statistic: Chi-square(2) = 20.2792
with p-value = 3.94837e-005:
'''
#no idea what this is
'''
Augmented regression for common factor test
OLS, using observations 1959:3-2009:3 (T = 201)
Dependent variable: ds_l_realinv
coefficient std. error t-ratio p-value
---------------------------------------------------------------
const -10.9481 1.35807 -8.062 7.44e-014 ***
ds_l_realgdp 4.28893 0.229459 18.69 2.40e-045 ***
realint_1 -0.662644 0.334872 -1.979 0.0492 **
ds_l_realinv_1 -0.108892 0.0715042 -1.523 0.1294
ds_l_realgdp_1 0.660443 0.390372 1.692 0.0923 *
realint_2 0.0769695 0.341527 0.2254 0.8219
Sum of squared residuals = 22432.8
Test of common factor restriction
Test statistic: F(2, 195) = 0.426391, with p-value = 0.653468
'''
################ with OLS, HAC errors
#Model 5: OLS, using observations 1959:2-2009:3 (T = 202)
#Dependent variable: ds_l_realinv
#HAC standard errors, bandwidth 4 (Bartlett kernel)
#coefficient std. error t-ratio p-value 95% CONFIDENCE INTERVAL
#for confidence interval t(199, 0.025) = 1.972
partable = np.array([
[-9.48167, 1.17709, -8.055, 7.17e-014, -11.8029, -7.16049], # ***
[4.37422, 0.328787, 13.30, 2.62e-029, 3.72587, 5.02258], #***
[-0.613997, 0.293619, -2.091, 0.0378, -1.19300, -0.0349939]
]) # **
result_gretl_g1 = dict(endog_mean=("Mean dependent var", 3.257395),
endog_std=("S.D. dependent var", 18.73915),
ssr=("Sum squared resid", 22799.68),
mse_resid_sqrt=("S.E. of regression", 10.70380),
rsquared=("R-squared", 0.676978),
rsquared_adj=("Adjusted R-squared", 0.673731),
fvalue=("F(2, 199)", 90.79971),
f_pvalue=("P-value(F)", 9.53e-29),
llf=("Log-likelihood", -763.9752),
aic=("Akaike criterion", 1533.950),
bic=("Schwarz criterion", 1543.875),
hqic=("Hannan-Quinn", 1537.966),
resid_acf1=("rho", -0.107341),
dw=("Durbin-Watson", 2.213805))
linear_logs = [1.68351, 0.430953, 2, "chi2"]
#for logs: dropping 70 nan or incomplete observations, T=133
#(res_ols.model.exog <=0).any(1).sum() = 69 ?not 70
linear_squares = [7.52477, 0.0232283, 2, "chi2"]
#Autocorrelation, Breusch-Godfrey test for autocorrelation up to order 4
lm_acorr4 = [1.17928, 0.321197, 4, 195, "F"]
lm2_acorr4 = [4.771043, 0.312, 4, "chi2"]
acorr_ljungbox4 = [5.23587, 0.264, 4, "chi2"]
#break
cusum_Harvey_Collier = [0.494432, 0.621549, 198,
"t"] #stats.t.sf(0.494432, 198)*2
#see cusum results in files
break_qlr = [3.01985, 0.1, 3, 196,
"maxF"] #TODO check this, max at 2001:4
break_chow = [13.1897, 0.00424384, 3, "chi2"] # break at 1984:1
arch_4 = [3.43473, 0.487871, 4, "chi2"]
normality = [23.962, 0.00001, 2, "chi2"]
het_white = [33.503723, 0.000003, 5, "chi2"]
het_breush_pagan = [1.302014, 0.521520, 2,
"chi2"] #TODO: not available
het_breush_pagan_konker = [0.709924, 0.701200, 2, "chi2"]
reset_2_3 = [5.219019, 0.00619, 2, 197, "f"]
reset_2 = [7.268492, 0.00762, 1, 198, "f"]
reset_3 = [5.248951, 0.023, 1, 198, "f"] #not available
cond_1norm = 5984.0525
determinant = 7.1087467e+008
reciprocal_condition_number = 0.013826504
vif = [1.001, 1.001]
names = 'date residual leverage influence DFFITS'.split(
)
cur_dir = os.path.abspath(os.path.dirname(__file__))
fpath = os.path.join(cur_dir,
'results/leverage_influence_ols_nostars.txt')
lev = np.genfromtxt(fpath,
skip_header=3,
skip_footer=1,
converters={0: lambda s: s})
#either numpy 1.6 or python 3.2 changed behavior
if np.isnan(lev[-1]['f1']):
lev = np.genfromtxt(fpath,
skip_header=3,
skip_footer=2,
converters={0: lambda s: s})
lev.dtype.names = names
res = res_ols #for easier copying
cov_hac, bse_hac = sw.cov_hac_simple(res,
nlags=4,
use_correction=False)
assert_almost_equal(res.params, partable[:, 0], 5)
assert_almost_equal(bse_hac, partable[:, 1], 5)
#TODO
assert_almost_equal(res.ssr, result_gretl_g1['ssr'][1], decimal=2)
#assert_almost_equal(res.llf, result_gretl_g1['llf'][1], decimal=7) #not in gretl
assert_almost_equal(res.rsquared,
result_gretl_g1['rsquared'][1],
decimal=6) #FAIL
assert_almost_equal(res.rsquared_adj,
result_gretl_g1['rsquared_adj'][1],
decimal=6) #FAIL
assert_almost_equal(np.sqrt(res.mse_resid),
result_gretl_g1['mse_resid_sqrt'][1],
decimal=5)
#f-value is based on cov_hac I guess
#assert_almost_equal(res.fvalue, result_gretl_g1['fvalue'][1], decimal=0) #FAIL
#assert_approx_equal(res.f_pvalue, result_gretl_g1['f_pvalue'][1], significant=1) #FAIL
#assert_almost_equal(res.durbin_watson, result_gretl_g1['dw'][1], decimal=7) #TODO
c = oi.reset_ramsey(res, degree=2)
compare_ftest(c, reset_2, decimal=(6, 5))
c = oi.reset_ramsey(res, degree=3)
compare_ftest(c, reset_2_3, decimal=(6, 5))
linear_sq = smsdia.linear_lm(res.resid, res.model.exog)
assert_almost_equal(linear_sq[0], linear_squares[0], decimal=6)
assert_almost_equal(linear_sq[1], linear_squares[1], decimal=7)
hbpk = smsdia.het_breushpagan(res.resid, res.model.exog)
assert_almost_equal(hbpk[0], het_breush_pagan_konker[0], decimal=6)
assert_almost_equal(hbpk[1], het_breush_pagan_konker[1], decimal=6)
hw = smsdia.het_white(res.resid, res.model.exog)
assert_almost_equal(hw[:2], het_white[:2], 6)
#arch
#sm_arch = smsdia.acorr_lm(res.resid**2, maxlag=4, autolag=None)
sm_arch = smsdia.het_arch(res.resid, maxlag=4)
assert_almost_equal(sm_arch[0], arch_4[0], decimal=5)
assert_almost_equal(sm_arch[1], arch_4[1], decimal=6)
vif2 = [
oi.variance_inflation_factor(res.model.exog, k) for k in [1, 2]
]
infl = oi.OLSInfluence(res_ols)
#print np.max(np.abs(lev['DFFITS'] - infl.dffits[0]))
#print np.max(np.abs(lev['leverage'] - infl.hat_matrix_diag))
#print np.max(np.abs(lev['influence'] - infl.influence)) #just added this based on Gretl
#just rough test, low decimal in Gretl output,
assert_almost_equal(lev['residual'], res.resid, decimal=3)
assert_almost_equal(lev['DFFITS'], infl.dffits[0], decimal=3)
assert_almost_equal(lev['leverage'], infl.hat_matrix_diag, decimal=3)
assert_almost_equal(lev['influence'], infl.influence, decimal=4)