stderr=_std)
ld = dict(bash_returncode=returncode, stdout=stdout, stderr=stderr, **ld)
if returncode == -9:
log_and_raise("Bash job timed out", ld)
elif returncode != 0:
# this raises an error and logs output:
log_and_raise("Bash job failed", ld)
else:
log.info("Bash job succeeded", extra=ld)
build_arg_parser = at.build_arg_parser([
at.group(
'Bash Job Options',
at.add_argument(
'--bash_cmd',
nargs=REMAINDER,
help=("All remaining args are passed to the bash script. ie: "
" myscript.sh arg1 --arg2 -c=4")),
at.add_argument('--watch',
type=int,
default=-1,
help=("Initiate a watchdog that will kill the process"
" after a given seconds")),
at.add_argument('--redirect_to_stderr',
action='store_true',
help=("Rather than capturing output and logging it,"
" send output directly to sys.stderr")),
)
])
log.info('running command', extra=ld)
returncode, stdout, stderr = run(
cmd, shell=True, timeout=ns.watch, stdout=_std, stderr=_std)
ld = dict(bash_returncode=returncode, stdout=stdout, stderr=stderr, **ld)
if returncode == -9:
log_and_raise("Bash job timed out", ld)
elif returncode != 0:
# this raises an error and logs output:
log_and_raise("Bash job failed", ld)
else:
log.info("Bash job succeeded", extra=ld)
build_arg_parser = at.build_arg_parser([at.group(
'Bash Job Options',
at.add_argument(
'--bash_cmd', nargs=REMAINDER, help=(
"All remaining args are passed to the bash script. ie: "
" myscript.sh arg1 --arg2 -c=4"
)),
at.add_argument(
'--watch', type=int, default=-1, help=(
"Initiate a watchdog that will kill the process"
" after a given seconds"
)),
at.add_argument(
'--redirect_to_stderr', action='store_true', help=(
"Rather than capturing output and logging it,"
" send output directly to sys.stderr")),
)])
def _validate_sample_size(str_i):
"""Helper for --sample argument option in argparse"""
i = float(str_i)
assert 0 <= i <= 1, "given sample size must be a number between [0, 1]"
return i
_build_arg_parser = at.build_arg_parser([at.group(
'Spark Job Options: How should given module.main process data?',
at.app_name,
at.group(
"Preprocess data",
at.add_argument(
'--mapjson', action='store_true', help=(
'convert each element in the textFile to json before doing'
' anything with it.')),
at.add_argument(
'--sample', type=_validate_sample_size,
help="Sample n percent of the data without replacement"),
),
at.add_argument('--read_fp'),
at.add_argument('--write_fp'),
at.add_argument(
'--spark_conf', nargs='*', type=lambda x: x.split('='), default=[],
help=("A list of key=value pairs that override"
" the task's default settings. ie:"
" spark.master=local[4] spark.ui.port=4046")),
at.add_argument(
'--spark_env', nargs='+', type=lambda x: x.split('='), default=[],
help=("A list of key=value pairs to add to the spark executor's"