def init(fignum, stats, key0, plot_u, E, P, **kwargs):
xx, yy, mu, _, tseq = \
stats.xx, stats.yy, stats.mu, stats.spread, stats.HMM.tseq
# Set parameters (kwargs takes precedence over params_orig)
p = DotDict(
**{kw: kwargs.get(kw, val)
for kw, val in params_orig.items()})
# Lag settings:
has_w = hasattr(stats, 'w')
if p.Tplot == 0:
K_plot = 1
else:
T_lag, K_lag, a_lag = validate_lag(p.Tplot, tseq)
K_plot = comp_K_plot(K_lag, a_lag, plot_u)
# Extend K_plot forther for adding blanks in resampling (PartFilt):
if has_w:
K_plot += a_lag
# Dimension settings
if not p.dims:
p.dims = arange(M)
if not p.labels:
p.labels = ["$x_%d$" % d for d in p.dims]
assert len(p.dims) == M
# Set up figure, axes
fig, _ = place.freshfig(fignum, figsize=(5, 5))
ax = plt.subplot(111, projection='3d' if is_3d else None)
ax.set_facecolor('w')
ax.set_title("Phase space trajectories")
# Tune plot
for ind, (s, i, t) in enumerate(zip(p.labels, p.dims, "xyz")):
viz.set_ilim(ax, ind,
*viz.stretch(*viz.xtrema(xx[:, i]), 1 / p.zoom))
eval("ax.set_%slabel('%s')" % (t, s))
# Allocate
d = DotDict() # data arrays
h = DotDict() # plot handles
s = DotDict() # scatter handles
if E is not None:
d.E = RollingArray((K_plot, len(E), M))
h.E = []
if P is not None:
d.mu = RollingArray((K_plot, M))
if True:
d.x = RollingArray((K_plot, M))
if list(p.obs_inds) == list(p.dims):
d.y = RollingArray((K_plot, M))
# Plot tails (invisible coz everything here is nan, for the moment).
if 'E' in d:
h.E += [
ax.plot(*xn, **p.ens_props)[0]
for xn in np.transpose(d.E, [1, 2, 0])
]
if 'mu' in d:
h.mu = ax.plot(*d.mu.T, 'b', lw=2)[0]
if True:
h.x = ax.plot(*d.x.T, 'k', lw=3)[0]
if 'y' in d:
h.y = ax.plot(*d.y.T, 'g*', ms=14)[0]
# Scatter. NB: don't init with nan's coz it's buggy
# (wrt. get_color() and _offsets3d) since mpl 3.1.
if 'E' in d:
s.E = ax.scatter(*E.T[p.dims],
s=3**2,
c=[hn.get_color() for hn in h.E])
if 'mu' in d:
s.mu = ax.scatter(*ones(M), s=8**2, c=[h.mu.get_color()])
if True:
s.x = ax.scatter(*ones(M),
s=14**2,
c=[h.x.get_color()],
marker=(5, 1),
zorder=99)
def update(key, E, P):
k, ko, faus = key
show_y = 'y' in d and ko is not None
def update_tail(handle, newdata):
handle.set_data(newdata[:, 0], newdata[:, 1])
if is_3d:
handle.set_3d_properties(newdata[:, 2])
def update_sctr(handle, newdata):
if is_3d:
handle._offsets3d = juggle_axes(*newdata.T, 'z')
else:
handle.set_offsets(newdata)
EE = duplicate_with_blanks_for_resampled(E, p.dims, key, has_w)
# Roll data array
ind = k if plot_u else ko
for Ens in EE: # If E is duplicated, so must the others be.
if 'E' in d:
d.E.insert(ind, Ens)
if True:
d.x.insert(ind, xx[k, p.dims])
if 'y' in d:
d.y.insert(ind, yy[ko, :] if show_y else nan * ones(M))
if 'mu' in d:
d.mu.insert(ind, mu[key][p.dims])
# Update graph
update_sctr(s.x, d.x[[-1]])
update_tail(h.x, d.x)
if 'y' in d:
update_tail(h.y, d.y)
if 'mu' in d:
update_sctr(s.mu, d.mu[[-1]])
update_tail(h.mu, d.mu)
else:
update_sctr(s.E, d.E[-1])
for n in range(len(E)):
update_tail(h.E[n], d.E[:, n, :])
update_alpha(key, stats, h.E, s.E)
return
return update
def init(fignum, stats, key0, plot_u, E, P, **kwargs):
xx, yy, mu, spread, tseq = \
stats.xx, stats.yy, stats.mu, stats.spread, stats.HMM.tseq
# Set parameters (kwargs takes precedence over params_orig)
p = DotDict(
**{kw: kwargs.get(kw, val)
for kw, val in params_orig.items()})
# Lag settings:
T_lag, K_lag, a_lag = validate_lag(p.Tplot, tseq)
K_plot = comp_K_plot(K_lag, a_lag, plot_u)
# Extend K_plot forther for adding blanks in resampling (PartFilt):
has_w = hasattr(stats, 'w')
if has_w:
K_plot += a_lag
# Chose marginal dims to plot
if not p.dims:
Nx = min(10, xx.shape[-1])
DimsX = linspace_int(xx.shape[-1], Nx)
else:
Nx = len(p.dims)
DimsX = p.dims
# Pre-process obs dimensions
# Rm inds of obs if not in DimsX
iiY = [i for i, m in enumerate(p.obs_inds) if m in DimsX]
# Rm obs_inds if not in DimsX
DimsY = [m for i, m in enumerate(p.obs_inds) if m in DimsX]
# Get dim (within y) of each x
DimsY = [DimsY.index(m) if m in DimsY else None for m in DimsX]
Ny = len(iiY)
# Set up figure, axes
fig, axs = place.freshfig(fignum,
figsize=(5, 7),
nrows=Nx,
sharex=True)
if Nx == 1:
axs = [axs]
# Tune plots
axs[0].set_title("Marginal time series")
for ix, (m, ax) in enumerate(zip(DimsX, axs)):
# ax.set_ylim(*viz.stretch(*viz.xtrema(xx[:, m]), 1/p.zoomy))
if not p.labels:
ax.set_ylabel("$x_{%d}$" % m)
else:
ax.set_ylabel(p.labels[ix])
axs[-1].set_xlabel('Time (t)')
plot_pause(0.05)
plt.tight_layout()
# Allocate
d = DotDict() # data arrays
h = DotDict() # plot handles
# Why "if True" ? Just to indent the rest of the line...
if True:
d.t = RollingArray((K_plot, ))
if True:
d.x = RollingArray((K_plot, Nx))
h.x = []
if True:
d.y = RollingArray((K_plot, Ny))
h.y = []
if E is not None:
d.E = RollingArray((K_plot, len(E), Nx))
h.E = []
if P is not None:
d.mu = RollingArray((K_plot, Nx))
h.mu = []
if P is not None:
d.s = RollingArray((K_plot, 2, Nx))
h.s = []
# Plot (invisible coz everything here is nan, for the moment).
for ix, (_m, iy, ax) in enumerate(zip(DimsX, DimsY, axs)):
if True:
h.x += ax.plot(d.t, d.x[:, ix], 'k')
if iy != None:
h.y += ax.plot(d.t, d.y[:, iy], 'g*', ms=10)
if 'E' in d:
h.E += [ax.plot(d.t, d.E[:, :, ix], **p.ens_props)]
if 'mu' in d:
h.mu += ax.plot(d.t, d.mu[:, ix], 'b')
if 's' in d:
h.s += [ax.plot(d.t, d.s[:, :, ix], 'b--', lw=1)]
def update(key, E, P):
k, ko, faus = key
EE = duplicate_with_blanks_for_resampled(E, DimsX, key, has_w)
# Roll data array
ind = k if plot_u else ko
for Ens in EE: # If E is duplicated, so must the others be.
if 'E' in d:
d.E.insert(ind, Ens)
if 'mu' in d:
d.mu.insert(ind, mu[key][DimsX])
if 's' in d:
d.s.insert(
ind, mu[key][DimsX] + [[1], [-1]] * spread[key][DimsX])
if True:
d.t.insert(ind, tseq.tt[k])
if True:
d.y.insert(
ind, yy[ko, iiY] if ko is not None else nan * ones(Ny))
if True:
d.x.insert(ind, xx[k, DimsX])
# Update graphs
for ix, (_m, iy, ax) in enumerate(zip(DimsX, DimsY, axs)):
sliding_xlim(ax, d.t, T_lag, True)
if True:
h.x[ix].set_data(d.t, d.x[:, ix])
if iy != None:
h.y[iy].set_data(d.t, d.y[:, iy])
if 'mu' in d:
h.mu[ix].set_data(d.t, d.mu[:, ix])
if 's' in d:
[h.s[ix][b].set_data(d.t, d.s[:, b, ix]) for b in [0, 1]]
if 'E' in d:
[
h.E[ix][n].set_data(d.t, d.E[:, n, ix])
for n in range(len(E))
]
if 'E' in d:
update_alpha(key, stats, h.E[ix])
# TODO 3: fixup. This might be slow?
# In any case, it is very far from tested.
# Also, relim'iting all of the time is distracting.
# Use d_ylim?
if 'E' in d:
lims = d.E
elif 'mu' in d:
lims = d.mu
lims = np.array(viz.xtrema(lims[..., ix]))
if lims[0] == lims[1]:
lims += [-.5, +.5]
ax.set_ylim(*viz.stretch(*lims, 1 / p.zoomy))
return
return update