def main():
sihObj = SubImageHelp("/cameras/left_hand_camera/image")
pihObj = PubImageHelp("/robot/xdisplay")
rate = rospy.Rate(10)
while not rospy.is_shutdown():
image = sihObj.getCVImage()
print image
try:
pihObj.publishROSImage(image)
rospy.sleep(1)
print "OK"
except:
print "a"
def __init__(self, limb = 'right', file_name = "BaxterCamArmJointPosFile.dat"): # Load Baxter Cam Arm Joint Positions posFile = open(file_name, "r") self._camArmJoints = cPickle.load(posFile) posFile.close() topic_name = "/cameras/" + limb + "_hand_camera/image" self._sihObj = SubImageHelp(topic_name) self._limb = limb self._cam_arm = baxter_interface.limb.Limb(self._limb)
class moveGetCamArmImage: def __init__(self, limb = 'right', file_name = "BaxterCamArmJointPosFile.dat"): # Load Baxter Cam Arm Joint Positions posFile = open(file_name, "r") self._camArmJoints = cPickle.load(posFile) posFile.close() topic_name = "/cameras/" + limb + "_hand_camera/image" self._sihObj = SubImageHelp(topic_name) self._limb = limb self._cam_arm = baxter_interface.limb.Limb(self._limb) def moveCamArm(self): # Move Baxter Arm to Joint Position print "Moving Camera Arm..." self._cam_arm.set_joint_position_speed(0.5) # Joint movement speed self._cam_arm.move_to_joint_positions(self._camArmJoints, 5.0) print "Camera Arm Moved to Position" def getCamArmImage(self): # Get image frame from baxter hand camera print print "Waiting for image..." error_flag = True rate = rospy.Rate(1) rate.sleep() while error_flag == True: try: img = self._sihObj.getCVImage() error_flag = False print "BaxterImageObtained" rate.sleep() except: print print "Error in Obtaining Image" return img
def main():
# Start ROS Node
rospy.init_node('GatherANNData')
# Load Baxter Cam Arm Joint Positions
posFile = open("BaxterCamArmJointPosFile.dat", "r")
joints = cPickle.load(posFile)
posFile.close()
# Move Baxter Arm to Joint Position
print "Moving Camera Arm..."
cam_arm = baxter_interface.limb.Limb("right")
cam_arm.set_joint_position_speed(0.5) # Joint movement speed
cam_arm.move_to_joint_positions(joints, 5.0)
print "Camera Arm Moved to Position"
print "Press C to continue and get image frame"
while(not sf.Keyboard.is_key_pressed(sf.Keyboard.C)):
pass
time.sleep(1)
# Get image frame from baxter hand camera
print
print "Waiting for image..."
sihObj = SubImageHelp("/cameras/right_hand_camera/image")
error_flag = True
rate = rospy.Rate(1)
rate.sleep()
while error_flag == True:
try:
img = sihObj.getCVImage()
error_flag = False
print "BaxterImageObtained"
rate.sleep()
except:
print
print "Error in Obtaining Image"
time.sleep(1)
# Load Image Clipping Coordinates
fileObj = open("ImageClipPosFile.dat", "r")
image_clip = cPickle.load(fileObj)
fileObj.close()
# Clip Image
img = img[:, image_clip[0] : image_clip[2] ]
img = img[image_clip[1] : image_clip[3], :]
# Load HSV Filter Values
fileObj = open("HSVValFile.dat", "r")
hsvcutoffs = cPickle.load(fileObj)
fileObj.close()
# Continue to image analysis
# Create Windows and TrackBars
cv2.namedWindow('Binary', cv2.WINDOW_NORMAL)
cv2.namedWindow('Contour', cv2.WINDOW_NORMAL)
cv2.namedWindow('Trackbars', cv2.WINDOW_NORMAL)
cv2.createTrackbar('HueMin','Trackbars', hsvcutoffs[0], 179, nothing)
cv2.createTrackbar('HueMax','Trackbars', hsvcutoffs[1], 179, nothing)
cv2.createTrackbar('SatMin','Trackbars', hsvcutoffs[2], 255, nothing)
cv2.createTrackbar('SatMax','Trackbars', hsvcutoffs[3], 255, nothing)
cv2.createTrackbar('ValMin','Trackbars', hsvcutoffs[4], 255, nothing)
cv2.createTrackbar('ValMax','Trackbars', hsvcutoffs[5], 255, nothing)
# Initialize kernel and font
kernel = cv2.getStructuringElement(cv2.MORPH_RECT, (5, 5))
font = cv2.FONT_HERSHEY_SIMPLEX
# Preprocess with gaussian blur
blur = cv2.GaussianBlur(img,(5,5),0)
blur_copy = img.copy()
print
print "Press C to Start Detection and C again to eneter values"
while(not sf.Keyboard.is_key_pressed(sf.Keyboard.C)):
pass
time.sleep(1)
while(not sf.Keyboard.is_key_pressed(sf.Keyboard.C)):
hmin = cv2.getTrackbarPos('HueMin', 'Trackbars')
smin = cv2.getTrackbarPos('SatMin', 'Trackbars')
vmin = cv2.getTrackbarPos('ValMin', 'Trackbars')
hmax = cv2.getTrackbarPos('HueMax', 'Trackbars')
smax = cv2.getTrackbarPos('SatMax', 'Trackbars')
vmax = cv2.getTrackbarPos('ValMax', 'Trackbars')
hsv = cv2.cvtColor(blur, cv2.COLOR_BGR2HSV)
lower_thresh = numpy.array([hmin, smin, vmin])
upper_thresh = numpy.array([hmax, smax, vmax])
mask = cv2.inRange(hsv, lower_thresh, upper_thresh)
mask = cv2.bitwise_not(mask)
median = cv2.medianBlur(mask,5)
er = cv2.erode(median, kernel, iterations = 0)
dl = cv2.dilate(er, kernel, iterations = 1)
er = cv2.erode(dl, kernel, iterations = 1)
dl = er
cv2.imshow('Binary', dl)
dl_copy = dl.copy()
try:
# Initialize necessary variables
tc = 0
HuMomentsList = numpy.array([[0.0], [0.0], [0.0], [0.0], [0.0], [0.0], [0.0], [0.0]])
CentroidsList = numpy.array([[0.0], [0.0]])
delta = 400
blur_copy = img.copy()
blur_copy2 = dl_copy.copy()
# Find contours
contours,hierarchy = cv2.findContours(dl, cv2.RETR_TREE, cv2.CHAIN_APPROX_SIMPLE)
# Start loop to find relevant contours
for i in range(len(contours)):
if (cv2.arcLength(contours[i], True) > delta) and (hierarchy[0, i, 3] == -1):
cv2.drawContours(blur_copy, contours, i, (255,255,255), 1)
m = cv2.moments(contours[i])
cen_x = int(m["m10"] / m["m00"])
cen_y = int(m["m01"] / m["m00"])
centroid = numpy.array([[cen_x], [cen_y]])
CentroidsList = numpy.hstack((CentroidsList, centroid))
cv2.putText(blur_copy, str(tc + 1), (cen_x, cen_y), font, 1,(0,255,100), 3, 8)
HuMoments = cv2.HuMoments(m)
I8 = m["nu11"] * ((m["nu30"]+m["nu12"])**2 - (m["nu03"]+m["nu21"])**2) - (m["nu20"]-m["nu02"])*(m["nu30"]+m["nu12"])*(m["nu03"]+m["nu21"])
HuMoments[6] = abs(HuMoments[6]) # Make reflection invariant
HuMoments = numpy.vstack((HuMoments, I8)) # Modified Humoments
HuMomentsList = numpy.hstack((HuMomentsList, HuMoments))
tc += 1
print "Number of instruments:", tc
cv2.imshow('Contour', blur_copy)
cv2.waitKey(1)
except:
pass
cv2.destroyAllWindows()
CentroidsList = CentroidsList[:, 1:(tc + 1)]
HuMomentsList = HuMomentsList[:, 1:(tc + 1)]
HuMomentsList = -numpy.sign(HuMomentsList) * numpy.log10(numpy.abs(HuMomentsList))
print
# For 5th HuMoment value of 2nd instrument (Total 8 HuMoment Values for each)
# HuMomentsList[4,1]
# For X value value of 5th instrument (X:0 Y:1)
# CentroidsList[0,4]
print
print"Centroids:"
print CentroidsList
print
print "HuMoments:"
print HuMomentsList
print
# HSV Cutoffs
hsvcutoffs = numpy.array([[hmin], [hmax], [smin], [smax], [vmin], [vmax]])
hsvcutoffs_copy = hsvcutoffs.copy()
for i in range(tc - 1):
hsvcutoffs = numpy.hstack((hsvcutoffs, hsvcutoffs_copy.copy()))
# Display Image
print "Press Key to Continue"
cv2.imshow('FinalImage', blur_copy)
cv2.waitKey(0)
print "Tool Values:"
print "Arbitary: 0 Scalpel:1 Retractor:2 Hemostat:3 Scissors:4 Hook:5 Needle:6"
# Get the tool values and append to Hu Moments
tool_values = numpy.array([0.0])
for i in range(tc):
value = raw_input("Enter value of tool %s:" % (i + 1))
value = numpy.array([ float(value[(len(value) - 1)]) ])
tool_values = numpy.hstack((tool_values, value))
tool_values = tool_values[1 : (tc+1)]
HuMomentsAndToolValues = numpy.vstack((HuMomentsList, tool_values))
HuMomentsAndToolValues = numpy.vstack((HuMomentsAndToolValues, hsvcutoffs))
# Add file to ANNData
for i in range(tc):
cc = len(glob(join("ANNData", "*.txt")))
name_file = "Data" + str(cc + 1) + ".txt"
full_name = join("ANNData", name_file)
data = HuMomentsAndToolValues[:, i]
print "Data added to %s" % full_name
numpy.savetxt(full_name, data)
cv2.destroyAllWindows()
cv2.waitKey(0)
def main():
global img
global image_corners
global click_count
global baxter_endpoints
rospy.init_node('RetrieveCamToolTableCalib', disable_signals=True)
# Record Baxter Coordinates
print
print "Record arm endpoints using Cuff Button and Big Button when 4 points are done (Left Arm)"
cam_arm = baxter_interface.limb.Limb("left")
bbhObj = BaxterButtonHelp("left")
baxter_endpoints = []
click_count = 0
while_flag = True
while(while_flag):
cButtonPressed = bbhObj.getButtonStates()['cState']
bButtonPressed = bbhObj.getButtonStates()['bState']
if(cButtonPressed):
pose = cam_arm.endpoint_pose()
xyz = pose["position"]
baxter_endpoints.append(xyz)
click_count += 1
time.sleep(1)
print "Baxter Arm EndPoint %s added" % (click_count)
if(bButtonPressed):
if (click_count == 4):
while_flag = False
print "Baxter Endpoints Recorded Recorded:"
print baxter_endpoints
elif (click_count < 4):
while_flag = True
baxter_endpoints = []
click_count = 0
print "Less than 4 points recorded. Please re-record all corners"
else:
while_flag = True
baxter_endpoints = []
click_count = 0
print "More than 4 points recorded. Please record only the corners"
time.sleep(1)
##############################################################
print "Storing Retrieval Position"
# Store retrieval position
print
print "Moving baxter cam arm to desired location image frame"
cam_arm_x = ((baxter_endpoints[0].x + baxter_endpoints[2].x) / 2) + 0 #As camera not at center
cam_arm_y = (baxter_endpoints[0].y + baxter_endpoints[2].y) / 2 + 0.003 #As camera is not at center
cam_arm_z = ((baxter_endpoints[0].z + baxter_endpoints[2].z) / 2) + 0 # Height above table
# All orientation calclulations
voObj = VectorOrientation()
voObj.setVectorChange(0.00, 0.00, -1.0) # X, Y and Z Vector Axis Orientation
#voObj.setAngleOrientation(-20, 0, 0, 'd')
voObj.calcVectorOrientation()
# Set gamma in degrees
voObj.setGamma(180, 'd')
# Trick for baxter orientation change for rigth arm:
voObj.setAngleOrientation(-voObj._theta, voObj._phi, voObj._gamma, 'r')
# Calculate quaternion
quat = voObj.getQuaternionOrientation()
# Inverse Kinematics
arm = IKSolveBaxter("left")
arm.setArmEndPos(cam_arm_x, cam_arm_y, cam_arm_z, quat[0], quat[1], quat[2], quat[3])
arm.ik_solve();
ret_joints = arm.getBaxterJointSpace()
bcajpFile = open("BaxterRetArmJointPosFile.dat", "w");
cPickle.dump(ret_joints, bcajpFile);
bcajpFile.close()
# Move Arm
control_arm = baxter_interface.limb.Limb("left")
control_arm.set_joint_position_speed(0.5) # Joint movement speed
control_arm.move_to_joint_positions(ret_joints, 5.0)
time.sleep(1)
##############################################################
# Move baxter arm
print
print "Moving baxter cam arm to desired location image frame"
cam_arm_x = ((baxter_endpoints[0].x + baxter_endpoints[2].x) / 2) + 0.075 #As camera not at center
cam_arm_y = (baxter_endpoints[0].y + baxter_endpoints[2].y) / 2 + 0.005 #As camera is not at center
cam_arm_z = ((baxter_endpoints[0].z + baxter_endpoints[2].z) / 2) + 0.15 # Height above table
# All orientation calclulations
voObj = VectorOrientation()
voObj.setVectorChange(0.00, 0.00, -1.0) # X, Y and Z Vector Axis Orientation
#voObj.setAngleOrientation(-20, 0, 0, 'd')
voObj.calcVectorOrientation()
# Set gamma in degrees
voObj.setGamma(180, 'd')
# Trick for baxter orientation change for rigth arm:
voObj.setAngleOrientation(-voObj._theta, voObj._phi, voObj._gamma, 'r')
# Calculate quaternion
quat = voObj.getQuaternionOrientation()
# Inverse Kinematics
arm = IKSolveBaxter("left")
arm.setArmEndPos(cam_arm_x, cam_arm_y, cam_arm_z, quat[0], quat[1], quat[2], quat[3])
arm.ik_solve();
joints = arm.getBaxterJointSpace()
# Move Arm
control_arm = baxter_interface.limb.Limb("left")
control_arm.set_joint_position_speed(0.5) # Joint movement speed
control_arm.move_to_joint_positions(joints, 5.0)
os.system("clear")
print "Press C to continue and store baxter camera arm position"
while(not sf.Keyboard.is_key_pressed(sf.Keyboard.C)):
pass
bcajpFile = open("RetrieveBaxterCamArmJointPosFile.dat", "w");
cPickle.dump(joints, bcajpFile);
bcajpFile.close()
print
print "Baxter Camera Arm Position Stored"
# Get image frame from baxter hand camera
print
print "Waiting for image..."
sihObj = SubImageHelp("/cameras/left_hand_camera/image")
error_flag = True
rate = rospy.Rate(1)
rate.sleep()
while error_flag == True:
try:
img = sihObj.getCVImage()
error_flag = False
print "BaxterImageObtained"
rate.sleep()
except:
print
print "Error in Obtaining Image"
# All recording points stuff
print
print "Record all 4 corner points using mouse double click and then press key to continue"
img_copy = img.copy()
while_flag = True
while(while_flag):
img = img_copy.copy()
click_count = 0
image_corners = []
cv2.namedWindow('RetrieveImage')
cv2.imshow('RetrieveImage', img)
cv2.setMouseCallback('RetrieveImage',handle_mouse)
cv2.waitKey(0)
if (click_count == 4):
while_flag = False
print "Image Corners Recorded"
print
print "The image corners are:"
print image_corners[0], image_corners[1], image_corners[2], image_corners[3]
elif (click_count < 4):
while_flag = True
print "Less than 4 points recorded. Please re-record all corners"
else:
while_flag = True
print "More than 4 points recorded. Please record only the corners"
#cv2.destroyAllWindows()
time.sleep(1)
X = numpy.matrix([
[image_corners[0][0], image_corners[2][0], image_corners[3][0]],
[image_corners[0][1], image_corners[2][1], image_corners[3][1]],
[1.0, 1.0, 1.0]
])
A = numpy.matrix([
[baxter_endpoints[0].x, baxter_endpoints[2].x, baxter_endpoints[3].x],
[baxter_endpoints[0].y, baxter_endpoints[2].y, baxter_endpoints[3].y],
[baxter_endpoints[0].z, baxter_endpoints[2].z, baxter_endpoints[3].z]
])
# Add Image Clip positions and Display Clipped Image
x1 = max( [image_corners[0][0], image_corners[3][0]] )
y1 = max( [image_corners[0][1], image_corners[1][1]] )
x2 = min( [image_corners[1][0], image_corners[2][0]] )
y2 = min( [image_corners[2][1], image_corners[3][1]] )
image_clip = [x1, y1, x2, y2]
img = img_copy[:, image_clip[0] : image_clip[2] ]
img = img[image_clip[1] : image_clip[3], :]
cv2.imwrite('RetrieveImage.png', img)
ImageClipPosFile = open("RetrieveImageClipPosFile.dat", "w");
cPickle.dump(image_clip, ImageClipPosFile);
ImageClipPosFile.close()
print "Image Clip Positions Added To File"
time.sleep(1)
print
print "Press C to continue and calculate tranformation matrix"
while(not sf.Keyboard.is_key_pressed(sf.Keyboard.C)):
pass
os.system("clear")
print "Image Corner Pixel Locations:"
print X
print
print "Baxter Endpoint Locations:"
print A
print
XAPosFile = open("RetrieveXAPosFile.dat", "w");
cPickle.dump(X, XAPosFile);
cPickle.dump(A, XAPosFile);
XAPosFile.close()
time.sleep(1)
print "X(ImageCorners) and A(BaxterEndpoints) Stored in XAPosFile.dat"
print
if(numpy.linalg.det(X) == 0):
print "Determiant of image corner matrix = 0"
print "Please retry calibration"
else:
T = numpy.matrix( numpy.dot( A, numpy.linalg.inv(X) ) )
print "Tranformation Matrix:"
print T
print
print "Writing to transformation matrix file..."
tmatFile = open("RetrieveTransformationMatrixFile.dat", "w");
cPickle.dump(T, tmatFile);
tmatFile.close()
print "Tranformation matrix added"
print
time.sleep(1)
print "Press C to continue and exit program"
while(not sf.Keyboard.is_key_pressed(sf.Keyboard.C)):
pass
rospy.signal_shutdown("Shutting down ROS Node to calculate transformation")
print
print "Exit Program"
print
return 0