def translate(self, value, topython=True):
if topython:
if isinstance(value, six.string_types) and len(value):
return Date(value).date
else:
return None
else:
if isinstance(value, dt.date):
return str(Date(value))
else:
return value
def process(self, _edObject=None):
"""
First uses the ImageService to find the imageId.
Then uses ToolsForCollectionWebService for storing the image quality indicators.
"""
EDPluginExec.process(self)
self.DEBUG("EDPluginISPyBStoreImageQualityIndicatorsv1_4.process")
# First get the image ID
xsDataImageQualityIndicators = self.getDataInput().getImageQualityIndicators()
strPathToImage = xsDataImageQualityIndicators.getImage().getPath().getValue()
strDirName = os.path.dirname(strPathToImage)+os.sep
strFileName = os.path.basename(strPathToImage)
if strDirName.endswith(os.sep):
strDirName = strDirName[:-1]
self.DEBUG("Looking for ISPyB imageId for dir %s name %s" % (strDirName, strFileName))
httpAuthenticatedToolsForCollectionWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
clientToolsForCollectionWebService = Client(self.strToolsForCollectionWebServiceWsdl, transport=httpAuthenticatedToolsForCollectionWebService)
iDataCollectionId = clientToolsForCollectionWebService.service.findDataCollectionFromFileLocationAndFileName(
strDirName, \
strFileName, \
)
print iDataCollectionId
httpAuthenticatedToolsForAutoprocessingWebService = HttpAuthenticated(username=self.strUserName, password=self.strPassWord)
clientToolsForAutoprocessingWebService = Client(self.strToolsForAutoprocessingWebServiceWsdl, transport=httpAuthenticatedToolsForAutoprocessingWebService)
iImageId = 0
iAutoProcProgramId = self.iAutoProcProgramId
iSpotTotal = xsDataImageQualityIndicators.getSpotTotal().getValue()
iInResTotal = xsDataImageQualityIndicators.getInResTotal().getValue()
iGoodBraggCandidates = xsDataImageQualityIndicators.getGoodBraggCandidates().getValue()
iIceRings = xsDataImageQualityIndicators.getIceRings().getValue()
fMethod1res = xsDataImageQualityIndicators.getMethod1Res().getValue()
fMethod2res = xsDataImageQualityIndicators.getMethod2Res().getValue()
fMaxUnitCell = xsDataImageQualityIndicators.getMaxUnitCell().getValue()
fPctSaturationTop50peaks = xsDataImageQualityIndicators.getPctSaturationTop50Peaks().getValue()
iInResolutionOvrlSpots = xsDataImageQualityIndicators.getInResolutionOvrlSpots().getValue()
fBinPopCutOffMethod2res = xsDataImageQualityIndicators.getBinPopCutOffMethod2Res().getValue()
providedDate = Date(datetime.datetime.now())
self.iImageQualityIndicatorsId = clientToolsForAutoprocessingWebService.service.storeImageQualityIndicators(
strDirName, \
strFileName, \
iImageId, \
iAutoProcProgramId, \
iSpotTotal, \
iInResTotal, \
iGoodBraggCandidates, \
iIceRings, \
fMethod1res, \
fMethod2res, \
fMaxUnitCell, \
fPctSaturationTop50peaks, \
iInResolutionOvrlSpots, \
fBinPopCutOffMethod2res, \
providedDate)
self.DEBUG("EDPluginISPyBStoreImageQualityIndicatorsv1_4.process: imageQualityIndicatorsId=%d" % self.iImageQualityIndicatorsId)
def testConvertToString(self, input, output):
assert str(Date(input)) == output
def testConstructFromString(self, string, y, m, d):
assert Date(string).value == datetime.date(y, m, d)
def testConstructFromDateTime_tzAware(self, hours):
tz = FixedOffsetTimezone(10)
date = datetime.datetime(2001, 12, 10, hours, 50, 21, 32132, tzinfo=tz)
assert Date(date).value == datetime.date(2001, 12, 10)
def testConstructFromDateTime_naive(self):
date = datetime.datetime(2001, 12, 10, 10, 50, 21, 32132)
assert Date(date).value == datetime.date(2001, 12, 10)
def testConstructFromDate(self):
date = datetime.date(2001, 12, 10)
assert Date(date).value is date