def _convert_sample(self, sample_info):
log_dct = sample_info._asdict() # ok, it's documented
# logger.trace('Will process sample.', extra=log_dct)
sample_data = sample_info.ia_data
sly.copy_file(sample_data['src_img_path'],
sample_info.img_path) # img is ready
ann = self._get_ann(sample_data['segm_path'],
sample_data.get('inst_path'), log_dct)
packed_ann = ann.pack()
sly.json_dump(packed_ann, sample_info.ann_path) # ann is ready
def convert(self):
in_datasets = self._find_in_datasets()
# map input structure to output
out_pr = sly.ProjectStructure(self.settings['res_names']['project'])
for ds_name, ds_path in in_datasets:
img_fnames = sly.ImportImgLister.list_images(ds_path)
for name_with_ext in img_fnames:
img_name, img_ext = osp.splitext(name_with_ext)
src_img_path = osp.join(ds_path, name_with_ext)
dt = {
'src_img_path': src_img_path,
'image_ext': img_ext,
}
out_pr.add_item(ds_name, img_name, dt)
logger.info(
'Found source dataset with raw images: "{}", {} sample(s).'.
format(ds_name, len(img_fnames)))
out_pr_fs = sly.ProjectFS(self.out_dir, out_pr)
out_pr_fs.make_dirs()
res_meta = sly.ProjectMeta() # empty
res_meta.to_dir(out_pr_fs.project_path)
progress = sly.progress_counter_import(out_pr.name, out_pr.image_cnt)
for sample_info in out_pr_fs:
sample_data = sample_info.ia_data
src_img_path = sample_data['src_img_path']
sly.copy_file(src_img_path, sample_info.img_path) # img is ready
image = Image.open(sample_info.img_path)
exif_data = pyexiv2.metadata.ImageMetadata(sample_info.img_path)
exif_data.read()
if exif_data.get_orientation() != 1:
logger.debug('Image with flip/rot EXIF',
extra={
'orientation': exif_data.get_orientation(),
'image_path': sample_info.img_path
})
image = sly.image_transpose_exif(image)
image.save(sample_info.img_path)
exif_data['Exif.Image.Orientation'] = pyexiv2.ExifTag(
'Exif.Image.Orientation', 1)
exif_data.modified = True
exif_data.write()
imsize_wh = image.size
ann = sly.Annotation.new_with_objects(imsize_wh, [])
sly.json_dump(ann.pack(), sample_info.ann_path) # ann is ready
progress.iter_done_report()
def _convert_sample(self, sample_info):
sample_data = sample_info.ia_data
try:
ann = self._load_citysc_annotation(sample_data['orig_ann_path'])
ann['tags'].append(sample_data['tag_name'])
packed_ann = ann.pack()
except Exception:
raise AnnConvException() # ok, may continue work with another sample
self.tags.add(sample_data['tag_name'])
sly.json_dump(packed_ann, sample_info.ann_path) # ann is ready
sly.copy_file(sample_data['orig_img_path'], sample_info.img_path) # img is ready
def _download_images_from_remote(self, pr_writer, image_id_to_ds, img_infos):
if len(img_infos) == 0:
return
infos_with_paths = [(info, pr_writer.get_img_path(image_id_to_ds[info.id], info.title, info.ext))
for info in img_infos]
hash2path = {x[0].hash: x[1] for x in infos_with_paths} # for unique hashes
unique_hashes = list(hash2path.keys())
ready_paths = []
ready_hashes = []
progress = sly.ProgressCounter('Download remote images', len(unique_hashes), ext_logger=self.logger)
def close_fh(fh):
fpath = fh.file_path
if fh.close_and_check():
ready_paths.append(fpath)
ready_hashes.append(img_hash)
progress.iter_done_report()
else:
self.logger.warning('file was skipped while downloading',
extra={'img_path': fpath, 'img_hash': img_hash})
# download by unique hashes
for batch_img_hashes in sly.batched(unique_hashes, constants.BATCH_SIZE_DOWNLOAD_IMAGES):
file_handler = None
img_hash = None
for chunk in self.api.get_stream_with_data('DownloadImages',
api_proto.ChunkImage,
api_proto.ImagesHashes(images_hashes=batch_img_hashes)):
if chunk.image.hash: # non-empty hash means beginning of new image
if file_handler is not None:
close_fh(file_handler)
img_hash = chunk.image.hash
self.logger.trace('download_images', extra={'img_hash': img_hash})
dst_fpath = hash2path[img_hash]
file_handler = ChunkedFileWriter(file_path=dst_fpath)
file_handler.write(chunk.chunk)
close_fh(file_handler) # must be not None
# process non-unique hashes
for info, dst_path in infos_with_paths:
origin_path = hash2path[info.hash]
if (origin_path != dst_path) and osp.isfile(origin_path):
sly.ensure_base_path(dst_path)
sly.copy_file(origin_path, dst_path)
self._write_images_to_agent_storage(ready_paths, ready_hashes)
def main():
logger.info('Hello world.')
# It isn't necessary, but let's suppose that our data will be stored as for Supervisely task:
# input in '/sly_task_data/data` and results in '/sly_task_data/results'.
# So TaskPaths provides the paths.
task_paths = sly.TaskPaths()
in_pr_dir = task_paths.project_dir # the paths includes project name
in_pr_meta = sly.ProjectMeta.from_dir(in_pr_dir)
# Now we've read meta of input project.
logger.info('Input project meta: {} class(es).'.format(
len(in_pr_meta.classes)))
in_pr_fs = sly.ProjectFS.from_disk(
*sly.ProjectFS.split_dir_project(in_pr_dir))
# Now we've read project structure.
logger.info(
'Input project: "{}" contains {} dataset(s) and {} image(s).'.format(
in_pr_fs.pr_structure.name, len(in_pr_fs.pr_structure.datasets),
in_pr_fs.image_cnt))
# It's convenient to create output project structure and store source file paths in ia_data.
out_pr_structure = sly.ProjectStructure(
'my_new_project') # rename project... just for fun
for item_descr in in_pr_fs: # iterate over input project
new_ia_data = {
'src_ann_path': item_descr.ann_path,
'src_img_path': item_descr.img_path,
**item_descr.ia_data # contains 'image_ext' which is required to write images
}
out_pr_structure.add_item(item_descr.ds_name, item_descr.image_name,
new_ia_data)
# ProjectFS will provide out file paths
out_pr_fs = sly.ProjectFS(task_paths.results_dir, out_pr_structure)
# We will add the rectangle to each annotation.
new_class_title = 'new-region'
rect_to_add = sly.Rect(left=20, top=20, right=50, bottom=100)
# Ok, start processing.
out_pr_fs.make_dirs() # create all directories required for writing
for item_descr in out_pr_fs: # iterate over output project
logger.info('Processing sample',
extra={
'dataset': item_descr.ds_name,
'image_name': item_descr.image_name
})
# Copy image unchanged.
sly.copy_file(item_descr.ia_data['src_img_path'], item_descr.img_path)
# Read annotation.
ann_packed = sly.json_load(item_descr.ia_data['src_ann_path'])
ann = sly.Annotation.from_packed(ann_packed, in_pr_meta)
# Add new figure to the annotation.
# Method to construct figures returns iterable of new figures.
# (e.g., line cropped with image bounds may produce some lines), but here we'll get not more than one figure
# ...or no figures if image is less than 20x20.
new_figures = sly.FigureRectangle.from_rect(new_class_title,
ann.image_size_wh,
rect_to_add)
ann['objects'].extend(new_figures)
# Save annotation.
sly.json_dump(ann.pack(), item_descr.ann_path)
# OK, and don't forget to create and save output project meta.
# We'll save given data and add new class with shape "rectangle".
out_pr_meta = deepcopy(in_pr_meta)
out_pr_meta.classes.add({
'title': new_class_title,
'shape': 'rectangle',
'color': '#FFFF00'
})
# Then store the meta.
out_pr_meta.to_dir(out_pr_fs.project_path)
logger.info('Done.')
def convert(self):
# determine dir level by project meta file
meta_p = sly.ProjectMeta.find_in_dir(self.in_dir)
if meta_p:
# meta_file in input dir
in_project_root_dir, pr_name_stub = sly.ProjectFS.split_dir_project(self.in_dir)
else:
# meta file in subdir of input dir
possible_projects = sly.get_subdirs(self.in_dir)
if len(possible_projects) != 1:
raise RuntimeError('Wrong input project structure, or multiple projects are passed.')
in_project_root_dir, pr_name_stub = self.in_dir, possible_projects[0]
# read if it's possible
try:
in_fs = sly.ProjectFS.from_disk(in_project_root_dir, pr_name_stub)
in_pr_meta = sly.ProjectMeta.from_dir(in_fs.project_path)
except Exception:
logger.error('Unable to read input meta.', exc_info=False)
raise
in_possible_datasets = sly.get_subdirs(in_fs.project_path)
in_datasets = list(in_fs.pr_structure.datasets.keys())
if len(in_possible_datasets) != len(in_datasets):
raise RuntimeError('Excess top-level directories without data (wrong img-ann structure?).')
for ds_name, the_ds in in_fs.pr_structure.datasets.items():
req_cnt = the_ds.image_cnt
dataset_path = in_fs.dataset_path(ds_name)
anns_path = in_fs.dataset_anns_path(dataset_path)
imgs_path = in_fs.dataset_imgs_path(dataset_path)
for subdir in (anns_path, imgs_path):
items_cnt = len(list(os.scandir(subdir)))
if items_cnt != req_cnt:
raise RuntimeError('Excess files or directories in dataset subdirectory.')
found_exts = {x.ia_data['image_ext'] for x in in_fs}
if not all(x in sly.ImportImgLister.extensions for x in found_exts):
raise RuntimeError('Found image(s) with unsupported types (by extension).')
sample_cnt = in_fs.pr_structure.image_cnt
if sample_cnt == 0:
raise RuntimeError('Empty project, no samples.')
logger.info('Found source structure: Supervisely format, {} sample(s).'.format(sample_cnt))
out_pr = deepcopy(in_fs.pr_structure)
out_pr.name = self.settings['res_names']['project']
out_pr_fs = sly.ProjectFS(self.out_dir, out_pr)
out_pr_fs.make_dirs()
in_pr_meta.to_dir(out_pr_fs.project_path)
progress = sly.progress_counter_import(out_pr.name, out_pr.image_cnt)
for s in out_pr_fs:
try:
src_img_path = in_fs.img_path(s.ds_name, s.image_name)
sly.copy_file(src_img_path, s.img_path) # img is ready
src_ann_path = in_fs.ann_path(s.ds_name, s.image_name)
packed_ann = sly.json_load(src_ann_path)
_ = sly.Annotation.from_packed(packed_ann, in_pr_meta) # to check if it is correct
sly.copy_file(src_ann_path, s.ann_path) # ann is ready
except Exception:
logger.error('Error occurred while processing input sample', exc_info=False, extra={
'dataset_name': s.ds_name, 'image_name': s.image_name,
})
raise
progress.iter_done_report()
def _read_obj_impl(self, st_path, dst_path):
sly.ensure_base_path(dst_path)
sly.copy_file(st_path, dst_path)