def proto_0222(theABF):
"""protocol: VC sine sweep."""
abf = ABF(theABF)
abf.log.info("analyzing as VC sine sweep")
plot = ABFplot(abf)
plot.figure_height, plot.figure_width = SQUARESIZE / 2, SQUARESIZE / 2
plot.figure_sweeps()
plt.tight_layout()
frameAndSave(abf, "VC sine sweep")
plt.close('all')
def proto_0201(theABF):
"""protocol: membrane test."""
abf = ABF(theABF)
abf.log.info("analyzing as a membrane test")
plot = ABFplot(abf)
plot.figure_height, plot.figure_width = SQUARESIZE / 2, SQUARESIZE / 2
plot.figure_sweeps()
# save it
plt.tight_layout()
frameAndSave(abf, "membrane test")
plt.close('all')
def proto_unknown(theABF):
"""protocol: unknown."""
abf = ABF(theABF)
abf.log.info("analyzing as an unknown protocol")
plot = ABFplot(abf)
plot.rainbow = False
plot.title = None
plot.figure_height, plot.figure_width = SQUARESIZE, SQUARESIZE
plot.kwargs["lw"] = .5
plot.figure_chronological()
plt.gca().set_axis_bgcolor(
'#AAAAAA') # different background if unknown protocol
frameAndSave(abf, "UNKNOWN")
def proto_0202(theABF):
"""protocol: MTIV."""
abf = ABF(theABF)
abf.log.info("analyzing as MTIV")
plot = ABFplot(abf)
plot.figure_height, plot.figure_width = SQUARESIZE, SQUARESIZE
plot.title = ""
plot.kwargs["alpha"] = .6
plot.figure_sweeps()
# frame to uppwer/lower bounds, ignoring peaks from capacitive transients
abf.setsweep(0)
plt.axis([None, None, abf.average(.9, 1) - 100, None])
abf.setsweep(-1)
plt.axis([None, None, None, abf.average(.9, 1) + 100])
# save it
plt.tight_layout()
frameAndSave(abf, "MTIV")
plt.close('all')