def test_source_inside(self):
sensors = [self.sensor_0, self.sensor_6]
# _source_inside -> True
source = swprocess.Source(x=3, y=0, z=0)
array = swprocess.Array1D(sensors, source)
self.assertTrue(array._source_inside)
# _source_inside -> False
source = swprocess.Source(x=-10, y=0, z=0)
array = swprocess.Array1D(sensors, source)
self.assertFalse(array._source_inside)
def test_flip_required(self):
sensors = [self.sensor_0, self.sensor_1]
# _flip_required -> True
source = swprocess.Source(x=3, y=0, z=0)
array = swprocess.Array1D(sensors, source)
self.assertTrue(array._flip_required)
# _flip_required -> False
source = swprocess.Source(x=-5, y=0, z=0)
array = swprocess.Array1D(sensors, source)
self.assertFalse(array._flip_required)
def test_eq(self):
source_0 = swprocess.Source(0, 0, 0)
source_1 = swprocess.Source(1, 0, 0)
array_a = swprocess.Array1D([self.sensor_0, self.sensor_1], source_0)
array_b = "array1d"
array_c = swprocess.Array1D([self.sensor_0], source_0)
array_d = swprocess.Array1D([self.sensor_0, self.sensor_1], source_1)
array_e = swprocess.Array1D([self.sensor_5, self.sensor_6], source_0)
array_f = swprocess.Array1D([self.sensor_0, self.sensor_1], source_0)
self.assertFalse(array_a == array_b)
self.assertFalse(array_a == array_c)
self.assertFalse(array_a == array_d)
self.assertFalse(array_a == array_e)
self.assertFalse(array_a != array_f)
def test_to_and_from_su(self):
spacing = 2
sensors = []
nsamples = 1000
time = np.arange(0, 1, 1 / nsamples)
for n in range(24):
sensor = swprocess.Sensor1C(amplitude=np.sin(2 * np.pi * n * time),
dt=1 / nsamples,
x=spacing * n,
y=0,
z=0,
nstacks=1,
delay=0)
sensors.append(sensor)
source = swprocess.Source(x=-10, y=0, z=0)
expected = swprocess.Array1D(sensors, source)
# To and from : SU
fname = "to_file.su"
expected.to_file(fname)
returned = swprocess.Array1D.from_files(fname)
self.assertEqual(expected, returned)
os.remove(fname)
# Bad : format
self.assertRaises(ValueError, expected.to_file, fname, ftype="seg2")
def test_manual_pick_first_arrivals(self):
# Replace self._ginput_session
edist, etime = [0, 1, 2], [2, 1, 0]
class DummyArray1D(swprocess.Array1D):
def _ginput_session(ax,
initial_adjustment=True,
ask_to_continue=True,
npts=None):
return (edist, etime)
array = DummyArray1D([self.sensor_0, self.sensor_5, self.sensor_6],
swprocess.Source(x=-5, y=0, z=0))
# time_ax = "y"
for waterfall_kwargs in [dict(time_ax="y"), None]:
rdist, rtime = array.manual_pick_first_arrivals(
waterfall_kwargs=waterfall_kwargs)
self.assertListEqual(edist, rdist)
self.assertListEqual(etime, rtime)
# time_ax = "x"
rtime, rdist = array.manual_pick_first_arrivals(waterfall_kwargs=dict(
time_ax="x"))
self.assertListEqual(edist, rdist)
self.assertListEqual(etime, rtime)
def test_timeseriesmatrix(self):
source = swprocess.Source(x=-5, y=0, z=0)
sensors = [self.sensor_0, self.sensor_1, self.sensor_5, self.sensor_6]
array = swprocess.Array1D(sensors=sensors, source=source)
base = np.array([[-.1] * 9 + [-0.11] + [-.1] * 9,
[0.2] * 9 + [+0.25] + [0.2] * 9,
[1.0] * 9 + [+1.05] + [1.0] * 9,
[2.0] * 9 + [+2.02] + [2.0] * 9])
# detrend=False, normalize="none"
expected = base
returned = array.timeseriesmatrix(detrend=False, normalize="none")
self.assertArrayEqual(expected, returned)
# detrend=False, normalize="each"
expected = base / np.array([0.11, 0.25, 1.05, 2.02]).reshape(4, 1)
returned = array.timeseriesmatrix(detrend=False, normalize="each")
self.assertArrayEqual(expected, returned)
# detrend=False, normalize="all"
expected = base / 2.02
returned = array.timeseriesmatrix(detrend=False, normalize="all")
self.assertArrayEqual(expected, returned)
# detrend=True, normalize="none"
expected = base - np.array([-.1, 0.2, 1, 2]).reshape(4, 1)
returned = array.timeseriesmatrix(detrend=True, normalize="none")
self.assertArrayAlmostEqual(expected, returned, places=2)
def test_plot(self):
# Basic case (near-side, 2m spacing)
fname = self.wghs_path + "1.dat"
swprocess.Array1D.from_files(fname).plot()
# Non-linear spacing
sensors = [
swprocess.Sensor1C(
[1, 2, 3],
dt=1,
x=x,
y=0,
z=0,
) for x in [0, 1, 3]
]
source = swprocess.Source(x=-5, y=0, z=0)
array = swprocess.Array1D(sensors=sensors, source=source)
array.plot()
# Basic case (far-side, 2m spacing)
fname = self.wghs_path + "20.dat"
swprocess.Array1D.from_files(fname).plot()
plt.show(block=False)
plt.close("all")
def test_init(self):
# Basic
source = swprocess.Source(x=-5, y=0, z=0)
sensors = [self.sensor_0, self.sensor_1]
array = swprocess.Array1D(sensors=sensors, source=source)
self.assertEqual(array.source, source)
self.assertListEqual(array.sensors, sensors)
# Bad: Invalid sensors
self.assertRaises(ValueError,
swprocess.Array1D,
sensors=[self.sensor_5, self.sensor_5],
source=source)
# Bad: Incompatable sensors
sensor_bad = swprocess.Sensor1C(amplitude=[1, 2, 3, 4],
dt=1,
x=7,
y=0,
z=0,
nstacks=1,
delay=0)
self.assertRaises(ValueError,
swprocess.Array1D,
sensors=[self.sensor_5, sensor_bad],
source=source)
def test_auto_pick_first_arrivals(self):
s1 = swprocess.Sensor1C(np.concatenate(
(np.zeros(100), np.array([0.1, 0, 0]), np.zeros(100))),
dt=1,
x=1,
y=0,
z=0)
s2 = swprocess.Sensor1C(np.concatenate(
(np.zeros(100), np.array([0, 0.2, 0]), np.zeros(100))),
dt=1,
x=2,
y=0,
z=0)
source = swprocess.Source(0, 0, 0)
array = swprocess.Array1D([s1, s2], source)
# algorithm = "threshold"
position, times = array.auto_pick_first_arrivals(algorithm="threshold")
self.assertListEqual(array.position(), position)
self.assertListEqual([100, 101], times)
# algorithm = "bad"
self.assertRaises(NotImplementedError,
array.auto_pick_first_arrivals,
algorithm="bad")
def test_from_array1d(self):
source = swprocess.Source(1, 0, 0)
# Non-normalized
sensors = [self.sensor_1, self.sensor_5]
expected = swprocess.Array1D(sensors, source)
returned = swprocess.Array1D.from_array1d(expected)
self.assertEqual(expected, returned)
def test_offsets(self):
source = swprocess.Source(x=-5, y=0, z=0)
sensors = [self.sensor_1, self.sensor_5, self.sensor_6]
array = swprocess.Array1D(sensors=sensors, source=source)
# simple
returned = array.offsets
expected = [5 + 1, 5 + 5, 5 + 6]
self.assertListEqual(expected, returned)
def test_position(self):
source = swprocess.Source(x=-5, y=0, z=0)
sensors = [self.sensor_1, self.sensor_5, self.sensor_6]
array = swprocess.Array1D(sensors=sensors, source=source)
# normalize=False
returned = array.position(normalize=False)
expected = [1, 5, 6]
self.assertListEqual(expected, returned)
# normalize=True
returned = array.position(normalize=True)
expected = [0, 4, 5]
self.assertListEqual(expected, returned)
def test_from_array1ds(self):
# Define source.
source = swprocess.Source(x=-5, y=0, z=0)
# Create signal array.
s_sensors = []
for n in range(5):
amp = 5 * np.random.random(100)
s_sensors.append(
swprocess.Sensor1C(amp, dt=0.01, x=2 * n, y=0, z=0))
signal = swprocess.Array1D(s_sensors, source)
# Create noise array.
n_sensors = []
for n in range(5):
amp = np.random.random(100)
n_sensors.append(
swprocess.Sensor1C(amp, dt=0.01, x=2 * n, y=0, z=0))
noise = swprocess.Array1D(n_sensors, source)
# Calculate SNR
fmin, fmax = 5, 50
snr = swprocess.snr.SignaltoNoiseRatio.from_array1ds(signal,
noise,
fmin=fmin,
fmax=fmax)
expected = np.arange(fmin, fmax + signal[0].df, signal[0].df)
returned = snr.frequencies
self.assertArrayAlmostEqual(expected, returned)
# Fail due to unequal samples
noise.trim(0, 0.25)
self.assertRaises(IndexError,
swprocess.snr.SignaltoNoiseRatio.from_array1ds,
signal,
noise,
fmin=fmin,
fmax=fmax)
# Pass after padding
snr = swprocess.snr.SignaltoNoiseRatio.from_array1ds(
signal,
noise,
fmin=fmin,
fmax=fmax,
pad_snr=True,
df_snr=signal[0].df)
expected = np.arange(fmin, fmax + signal[0].df, signal[0].df)
returned = snr.frequencies
self.assertArrayAlmostEqual(expected, returned)
def dummy_array(amp, dt, nstacks, delay, nsensors, spacing, source_x):
"""Make simple dummy array from timeseries for testing."""
sensors = []
for i in range(nsensors):
sensor = swprocess.Sensor1C(amp,
dt,
x=i * spacing,
y=0,
z=0,
nstacks=nstacks,
delay=delay)
sensors.append(sensor)
source = swprocess.Source(x=source_x, y=0, z=0)
return swprocess.Array1D(sensors=sensors, source=source)
def test_from_array(self):
class SubEmpty(swprocess.wavefieldtransforms.EmptyWavefieldTransform):
@classmethod
def _create_vector(cls, *args, **kwargs):
cls._create_vector_args = args
cls._create_vector_kwargs = kwargs
sensors = [swprocess.Sensor1C([0]*100, 0.01, 2*n, 0, 0)
for n in range(5)]
source = swprocess.Source(-5, 0, 0)
array = swprocess.Array1D(sensors, source)
settings = dict(fmin=5, fmax=50, vmin=75,
vmax=300, nvel=30, vspace="lin")
empty = SubEmpty.from_array(array, settings)
self.assertArrayEqual(np.arange(5., 50+1, 1), empty.frequencies)
expected = (settings["vmin"], settings["vmax"], settings["nvel"], settings["vspace"])
returned = empty._create_vector_args
self.assertTupleEqual(expected, returned)
self.assertDictEqual({}, empty._create_vector_kwargs)
def test_spacing(self):
# constant spacing
for spacing in [1, 2, 5.5]:
array = self.dummy_array(amp=[0, 0, 0],
dt=1,
nstacks=1,
delay=0,
nsensors=3,
spacing=spacing,
source_x=-5)
self.assertEqual(spacing, array.spacing)
# non-constant spacing
source = swprocess.Source(x=-10, y=0, z=0)
sensors = [self.sensor_0, self.sensor_5, self.sensor_6]
array = swprocess.Array1D(sensors=sensors, source=source)
try:
array.spacing
except ValueError:
raised_error = True
else:
raised_error = False
finally:
self.assertTrue(raised_error)
def test_interactive_mute(self):
# Replace self._ginput_session
class DummyArray1D(swprocess.Array1D):
def set_xy_before(self, xs, ys):
self.xs_before = xs
self.ys_before = ys
def set_xy_after(self, xs, ys):
self.xs_after = xs
self.ys_after = ys
def _my_generator(self):
xs = [self.xs_before, self.xs_after]
ys = [self.ys_before, self.ys_after]
for x, y in zip(xs, ys):
yield (x, y)
def _opt1_ginput_session(self, *args, **kwargs):
if not getattr(self, "mygen", False):
self.mygen = self._my_generator()
return next(self.mygen)
def _opt2_ginput_session(self, *args, **kwargs):
return (self.xs_after, self.ys_after)
def interactive_mute(self,
mute_location="both",
window_kwargs=None,
waterfall_kwargs=None):
if mute_location == "after":
self._ginput_session = self._opt2_ginput_session
else:
self._ginput_session = self._opt1_ginput_session
return super().interactive_mute(
mute_location=mute_location,
window_kwargs=window_kwargs,
waterfall_kwargs=waterfall_kwargs)
# Create dummy array
source = swprocess.Source(x=-5, y=0, z=0)
sensors = [self.sensor_0, self.sensor_5, self.sensor_6]
sensors = [swprocess.Sensor1C.from_sensor1c(x) for x in sensors]
array = DummyArray1D(sensors=sensors, source=source)
# Set mute locations -> time_ax = "y"
xs_b, ys_b = (1, 5), (1, 3)
array.set_xy_before(xs_b, ys_b)
xs_a, ys_a = (1, 6), (4, 7)
array.set_xy_after(xs_a, ys_a)
# mute_location = "before" & time_ax = "y"
start, end = array.interactive_mute(mute_location="before")
self.assertTupleEqual(((xs_b[0], ys_b[0]), (xs_b[1], ys_b[1])), start)
self.assertTrue(end is None)
delattr(array, "mygen")
# mute_location = "after" & time_ax = "y"
start, end = array.interactive_mute(mute_location="after")
self.assertTrue(start is None)
self.assertTupleEqual(((xs_a[0], ys_a[0]), (xs_a[1], ys_a[1])), end)
# mute_location = "both" & time_ax = "y"
start, end = array.interactive_mute(mute_location="both")
self.assertTupleEqual(((xs_b[0], ys_b[0]), (xs_b[1], ys_b[1])), start)
self.assertTupleEqual(((xs_a[0], ys_a[0]), (xs_a[1], ys_a[1])), end)
delattr(array, "mygen")
# Set mute locations -> time_ax = "x"
array.set_xy_before(ys_b, xs_b)
array.set_xy_after(ys_a, xs_a)
# mute_location = "before" & time_ax = "x"
start, end = array.interactive_mute(mute_location="before",
waterfall_kwargs=dict(time_ax="x"))
self.assertTupleEqual(((xs_b[0], ys_b[0]), (xs_b[1], ys_b[1])), start)
self.assertTrue(end is None)
delattr(array, "mygen")
# mute_location = "after" & time_ax = "x"
start, end = array.interactive_mute(mute_location="after",
waterfall_kwargs=dict(time_ax="x"))
self.assertTrue(start is None)
self.assertTupleEqual(((xs_a[0], ys_a[0]), (xs_a[1], ys_a[1])), end)
# mute_location = "both" & time_ax = "x"
start, end = array.interactive_mute(mute_location="both",
waterfall_kwargs=dict(time_ax="x"))
self.assertTupleEqual(((xs_b[0], ys_b[0]), (xs_b[1], ys_b[1])), start)
self.assertTupleEqual(((xs_a[0], ys_a[0]), (xs_a[1], ys_a[1])), end)
delattr(array, "mygen")
