def get_semseg_axon_model():
try:
from elektronn3.models.base import InferenceModel
except Exception as e: # ImportError as e:
log_main.error(
"elektronn3 could not be imported ({}). Please see 'https://github."
"com/ELEKTRONN/elektronn3' for more information.".format(e))
path = global_params.config.mpath_axonsem
m = InferenceModel(path)
m._path = path
return m
def get_tripletnet_model_large_e3():
"""Those networks are typically trained with `naive_view_normalization_new` """
try:
from elektronn3.models.base import InferenceModel
except Exception as e: # ImportError as e:
log_main.error(
"elektronn3 could not be imported ({}). Please see 'https://github."
"com/ELEKTRONN/elektronn3' for more information.".format(e))
m_path = global_params.config.mpath_tnet_large
m = InferenceModel(m_path)
return m
def get_celltype_model_large_e3():
"""Those networks are typically trained with `naive_view_normalization_new`
Unlike the other e3 InferenceModel instances, here the view normalization
is applied in the downstream inference method (`predict_sso_celltype`)
because the celltype model also gets scalar values as input which should
not be normalized."""
try:
from elektronn3.models.base import InferenceModel
except Exception as e: # ImportError as e:
log_main.error(
"elektronn3 could not be imported ({}). Please see 'https://github."
"com/ELEKTRONN/elektronn3' for more information.".format(e))
path = global_params.config.mpath_celltype_large_e3
m = InferenceModel(path)
return m