def test_chi(): from sympy import I k = Symbol("k", integer=True) X = Chi('x', k) assert density(X)(x) == 2**(-k / 2 + 1) * x**(k - 1) * exp( -x**2 / 2) / gamma(k / 2) # Tests the characteristic function assert characteristic_function(X)( x) == sqrt(2) * I * x * gamma(k / 2 + S(1) / 2) * hyper( (k / 2 + S(1) / 2, ), (S(3) / 2, ), -x**2 / 2) / gamma(k / 2) + hyper( (k / 2, ), (S(1) / 2, ), -x**2 / 2) # Tests the moment generating function assert moment_generating_function(X)( x) == sqrt(2) * x * gamma(k / 2 + S(1) / 2) * hyper( (k / 2 + S(1) / 2, ), (S(3) / 2, ), x**2 / 2) / gamma(k / 2) + hyper( (k / 2, ), (S(1) / 2, ), x**2 / 2) k = Symbol("k", integer=True, positive=False) raises(ValueError, lambda: Chi('x', k)) k = Symbol("k", integer=False, positive=True) raises(ValueError, lambda: Chi('x', k))
def test_sample_numpy(): distribs_numpy = [ Beta("B", 1, 1), Normal("N", 0, 1), Gamma("G", 2, 7), Exponential("E", 2), LogNormal("LN", 0, 1), Pareto("P", 1, 1), ChiSquared("CS", 2), Uniform("U", 0, 1) ] size = 3 numpy = import_module('numpy') if not numpy: skip('Numpy is not installed. Abort tests for _sample_numpy.') else: for X in distribs_numpy: samps = sample(X, size=size, library='numpy') for sam in samps: assert sam in X.pspace.domain.set raises(NotImplementedError, lambda: sample(Chi("C", 1), library='numpy')) raises( NotImplementedError, lambda: Chi("C", 1).pspace.distribution.sample(library='tensorflow'))
def test_chi(): k = Symbol("k", integer=True) X = Chi('x', k) assert density(X)(x) == 2**(-k/2 + 1)*x**(k - 1)*exp(-x**2/2)/gamma(k/2) k = Symbol("k", integer=True, positive=False) raises(ValueError, lambda: Chi('x', k)) k = Symbol("k", integer=False, positive=True) raises(ValueError, lambda: Chi('x', k))
def test_precomputed_characteristic_functions(): import mpmath def test_cf(dist, support_lower_limit, support_upper_limit): pdf = density(dist) t = Symbol('t') x = Symbol('x') # first function is the hardcoded CF of the distribution cf1 = lambdify([t], characteristic_function(dist)(t), 'mpmath') # second function is the Fourier transform of the density function f = lambdify([x, t], pdf(x)*exp(I*x*t), 'mpmath') cf2 = lambda t: mpmath.quad(lambda x: f(x, t), [support_lower_limit, support_upper_limit], maxdegree=10) # compare the two functions at various points for test_point in [2, 5, 8, 11]: n1 = cf1(test_point) n2 = cf2(test_point) assert abs(re(n1) - re(n2)) < 1e-12 assert abs(im(n1) - im(n2)) < 1e-12 test_cf(Beta('b', 1, 2), 0, 1) test_cf(Chi('c', 3), 0, mpmath.inf) test_cf(ChiSquared('c', 2), 0, mpmath.inf) test_cf(Exponential('e', 6), 0, mpmath.inf) test_cf(Logistic('l', 1, 2), -mpmath.inf, mpmath.inf) test_cf(Normal('n', -1, 5), -mpmath.inf, mpmath.inf) test_cf(RaisedCosine('r', 3, 1), 2, 4) test_cf(Rayleigh('r', 0.5), 0, mpmath.inf) test_cf(Uniform('u', -1, 1), -1, 1) test_cf(WignerSemicircle('w', 3), -3, 3)
def test_sample_scipy(): distribs_scipy = [ Beta("B", 1, 1), BetaPrime("BP", 1, 1), Cauchy("C", 1, 1), Chi("C", 1), Normal("N", 0, 1), Gamma("G", 2, 7), GammaInverse("GI", 1, 1), GaussianInverse("GUI", 1, 1), Exponential("E", 2), LogNormal("LN", 0, 1), Pareto("P", 1, 1), StudentT("S", 2), ChiSquared("CS", 2), Uniform("U", 0, 1) ] size = 3 scipy = import_module('scipy') if not scipy: skip('Scipy is not installed. Abort tests for _sample_scipy.') else: for X in distribs_scipy: samps = sample(X, size=size, library='scipy') samps2 = sample(X, size=(2, 2), library='scipy') for sam in samps: assert sam in X.pspace.domain.set for i in range(2): for j in range(2): assert samps2[i][j] in X.pspace.domain.set
def test_chi(): k = Symbol("k", integer=True) x = Symbol("x") X = Chi(k, symbol=x) assert density(X) == (Lambda( _x, 2**(-k / 2 + 1) * _x**(k - 1) * exp(-_x**2 / 2) / gamma(k / 2)))
def test_sample_pymc3(): distribs_pymc3 = [ Beta("B", 1, 1), Cauchy("C", 1, 1), Normal("N", 0, 1), Gamma("G", 2, 7), GaussianInverse("GI", 1, 1), Exponential("E", 2), LogNormal("LN", 0, 1), Pareto("P", 1, 1), ChiSquared("CS", 2), Uniform("U", 0, 1) ] size = 3 pymc3 = import_module('pymc3') if not pymc3: skip('PyMC3 is not installed. Abort tests for _sample_pymc3.') else: with ignore_warnings( UserWarning ): ### TODO: Restore tests once warnings are removed for X in distribs_pymc3: samps = next(sample(X, size=size, library='pymc3')) for sam in samps: assert sam in X.pspace.domain.set raises(NotImplementedError, lambda: next(sample(Chi("C", 1), library='pymc3')))
def test_sample_scipy(): distribs_scipy = [ Beta("B", 1, 1), BetaPrime("BP", 1, 1), Cauchy("C", 1, 1), Chi("C", 1), Normal("N", 0, 1), Gamma("G", 2, 7), GammaInverse("GI", 1, 1), GaussianInverse("GUI", 1, 1), Exponential("E", 2), LogNormal("LN", 0, 1), Pareto("P", 1, 1), StudentT("S", 2), ChiSquared("CS", 2), Uniform("U", 0, 1) ] size = 3 numsamples = 5 scipy = import_module('scipy') if not scipy: skip('Scipy is not installed. Abort tests for _sample_scipy.') else: with ignore_warnings( UserWarning ): ### TODO: Restore tests once warnings are removed g_sample = list( sample(Gamma("G", 2, 7), size=size, numsamples=numsamples)) assert len(g_sample) == numsamples for X in distribs_scipy: samps = next(sample(X, size=size, library='scipy')) samps2 = next(sample(X, size=(2, 2), library='scipy')) for sam in samps: assert sam in X.pspace.domain.set for i in range(2): for j in range(2): assert samps2[i][j] in X.pspace.domain.set
def test_chi(): k = Symbol("k", integer=True) X = Chi('x', k) assert density(X)(x) == 2**(-k/2 + 1)*x**(k - 1)*exp(-x**2/2)/gamma(k/2)
def test_moment_generating_function(): t = symbols('t', positive=True) # Symbolic tests a, b, c = symbols('a b c') mgf = moment_generating_function(Beta('x', a, b))(t) assert mgf == hyper((a, ), (a + b, ), t) mgf = moment_generating_function(Chi('x', a))(t) assert mgf == sqrt(2)*t*gamma(a/2 + S.Half)*\ hyper((a/2 + S.Half,), (Rational(3, 2),), t**2/2)/gamma(a/2) +\ hyper((a/2,), (S.Half,), t**2/2) mgf = moment_generating_function(ChiSquared('x', a))(t) assert mgf == (1 - 2 * t)**(-a / 2) mgf = moment_generating_function(Erlang('x', a, b))(t) assert mgf == (1 - t / b)**(-a) mgf = moment_generating_function(ExGaussian("x", a, b, c))(t) assert mgf == exp(a * t + b**2 * t**2 / 2) / (1 - t / c) mgf = moment_generating_function(Exponential('x', a))(t) assert mgf == a / (a - t) mgf = moment_generating_function(Gamma('x', a, b))(t) assert mgf == (-b * t + 1)**(-a) mgf = moment_generating_function(Gumbel('x', a, b))(t) assert mgf == exp(b * t) * gamma(-a * t + 1) mgf = moment_generating_function(Gompertz('x', a, b))(t) assert mgf == b * exp(b) * expint(t / a, b) mgf = moment_generating_function(Laplace('x', a, b))(t) assert mgf == exp(a * t) / (-b**2 * t**2 + 1) mgf = moment_generating_function(Logistic('x', a, b))(t) assert mgf == exp(a * t) * beta(-b * t + 1, b * t + 1) mgf = moment_generating_function(Normal('x', a, b))(t) assert mgf == exp(a * t + b**2 * t**2 / 2) mgf = moment_generating_function(Pareto('x', a, b))(t) assert mgf == b * (-a * t)**b * uppergamma(-b, -a * t) mgf = moment_generating_function(QuadraticU('x', a, b))(t) assert str(mgf) == ( "(3*(t*(-4*b + (a + b)**2) + 4)*exp(b*t) - " "3*(t*(a**2 + 2*a*(b - 2) + b**2) + 4)*exp(a*t))/(t**2*(a - b)**3)") mgf = moment_generating_function(RaisedCosine('x', a, b))(t) assert mgf == pi**2 * exp(a * t) * sinh(b * t) / (b * t * (b**2 * t**2 + pi**2)) mgf = moment_generating_function(Rayleigh('x', a))(t) assert mgf == sqrt(2)*sqrt(pi)*a*t*(erf(sqrt(2)*a*t/2) + 1)\ *exp(a**2*t**2/2)/2 + 1 mgf = moment_generating_function(Triangular('x', a, b, c))(t) assert str(mgf) == ("(-2*(-a + b)*exp(c*t) + 2*(-a + c)*exp(b*t) + " "2*(b - c)*exp(a*t))/(t**2*(-a + b)*(-a + c)*(b - c))") mgf = moment_generating_function(Uniform('x', a, b))(t) assert mgf == (-exp(a * t) + exp(b * t)) / (t * (-a + b)) mgf = moment_generating_function(UniformSum('x', a))(t) assert mgf == ((exp(t) - 1) / t)**a mgf = moment_generating_function(WignerSemicircle('x', a))(t) assert mgf == 2 * besseli(1, a * t) / (a * t) # Numeric tests mgf = moment_generating_function(Beta('x', 1, 1))(t) assert mgf.diff(t).subs(t, 1) == hyper((2, ), (3, ), 1) / 2 mgf = moment_generating_function(Chi('x', 1))(t) assert mgf.diff(t).subs(t, 1) == sqrt(2) * hyper( (1, ), (Rational(3, 2), ), S.Half) / sqrt(pi) + hyper( (Rational(3, 2), ), (Rational(3, 2), ), S.Half) + 2 * sqrt(2) * hyper( (2, ), (Rational(5, 2), ), S.Half) / (3 * sqrt(pi)) mgf = moment_generating_function(ChiSquared('x', 1))(t) assert mgf.diff(t).subs(t, 1) == I mgf = moment_generating_function(Erlang('x', 1, 1))(t) assert mgf.diff(t).subs(t, 0) == 1 mgf = moment_generating_function(ExGaussian("x", 0, 1, 1))(t) assert mgf.diff(t).subs(t, 2) == -exp(2) mgf = moment_generating_function(Exponential('x', 1))(t) assert mgf.diff(t).subs(t, 0) == 1 mgf = moment_generating_function(Gamma('x', 1, 1))(t) assert mgf.diff(t).subs(t, 0) == 1 mgf = moment_generating_function(Gumbel('x', 1, 1))(t) assert mgf.diff(t).subs(t, 0) == EulerGamma + 1 mgf = moment_generating_function(Gompertz('x', 1, 1))(t) assert mgf.diff(t).subs(t, 1) == -e * meijerg(((), (1, 1)), ((0, 0, 0), ()), 1) mgf = moment_generating_function(Laplace('x', 1, 1))(t) assert mgf.diff(t).subs(t, 0) == 1 mgf = moment_generating_function(Logistic('x', 1, 1))(t) assert mgf.diff(t).subs(t, 0) == beta(1, 1) mgf = moment_generating_function(Normal('x', 0, 1))(t) assert mgf.diff(t).subs(t, 1) == exp(S.Half) mgf = moment_generating_function(Pareto('x', 1, 1))(t) assert mgf.diff(t).subs(t, 0) == expint(1, 0) mgf = moment_generating_function(QuadraticU('x', 1, 2))(t) assert mgf.diff(t).subs(t, 1) == -12 * e - 3 * exp(2) mgf = moment_generating_function(RaisedCosine('x', 1, 1))(t) assert mgf.diff(t).subs(t, 1) == -2*e*pi**2*sinh(1)/\ (1 + pi**2)**2 + e*pi**2*cosh(1)/(1 + pi**2) mgf = moment_generating_function(Rayleigh('x', 1))(t) assert mgf.diff(t).subs(t, 0) == sqrt(2) * sqrt(pi) / 2 mgf = moment_generating_function(Triangular('x', 1, 3, 2))(t) assert mgf.diff(t).subs(t, 1) == -e + exp(3) mgf = moment_generating_function(Uniform('x', 0, 1))(t) assert mgf.diff(t).subs(t, 1) == 1 mgf = moment_generating_function(UniformSum('x', 1))(t) assert mgf.diff(t).subs(t, 1) == 1 mgf = moment_generating_function(WignerSemicircle('x', 1))(t) assert mgf.diff(t).subs(t, 1) == -2*besseli(1, 1) + besseli(2, 1) +\ besseli(0, 1)