provenance = Activity(name=meta_data['activity'], desciption=meta_data['description'], used = meta_data['used'] exectuted = meta_data['used'] ) #prov = syn.store(prov) name = of.path.basename(input_path) #Add metadata to files to be uploaded f = File(input_path, name = name, parentId=DST_FOLDER) f.dataType = meta_data['dataType'] f.fileType = meta_data['dataType'] f.variant_workflow = meta_data['workflow'] f.variant_workflow_version = meta_data['workflowVersion'] f.call_type = call_type f.reference_build = meta_data['referenceBuild'] f.center_name = meta_data['center_name'] f.file_md5 = synapseclient.utils.md5_for_file(input_path) f.study = 'PCAWG 2.0' f.submitter_donor_id = meta_data['donor_id'] f.alignment_workflow_name='Workflow_Bundle_BWA (UCSC Implementation)' f.alignment_workflow_source_url='https://github.com/kellrott/tcga_realign' f.alignment_workflow_version='2.6.0' #Store metadata and file to Synapse #f = syn.store(f, activity = provenance) #Add Description #wiki = synapseclient.Wiki(TITLE, f, DESCRIPTION) #wiki = syn.store(wiki)