def _get_team_count(syn: Synapse, teamid: int) -> dict:
"""Rest call wrapper for getting team member count
Args:
syn: Synapse object
teamid: Synapse team id
"""
count = syn.restGET(f"/teamMembers/count/{teamid}")
return count
def test_waitForAsync():
syn = Synapse(debug=True, skip_checks=True)
syn.table_query_timeout = 0.05
syn.table_query_max_sleep = 0.001
syn.restPOST = MagicMock(return_value={"token": "1234567"})
# return a mocked http://docs.synapse.org/rest/org/sagebionetworks/repo/model/asynch/AsynchronousJobStatus.html
syn.restGET = MagicMock(return_value={
"jobState": "PROCESSING",
"progressMessage": "Test progress message",
"progressCurrent": 10,
"progressTotal": 100,
"errorMessage": "Totally fubared error",
"errorDetails": "Totally fubared error details"})
pytest.raises(SynapseTimeoutError, syn._waitForAsync, uri="foo/bar",
request={"foo": "bar"})
def create_evaluation_queue(syn: Synapse, name: str) -> Evaluation:
"""Creates evaluation queue
Args:
name: Name of queue
Returns:
a synapseclient.Evaluation
"""
queue = Evaluation(name=name, contentSource="syn21849255")
try:
queue = syn.store(queue)
except Exception:
url_name = quote(name)
queue = syn.restGET(f"/evaluation/name/{url_name}")
queue = Evaluation(**queue)
return queue
iamConnections.append(IAMConnection(aws_access_key_id=aws_access_key_id, aws_secret_access_key=aws_secret_access_key))
i=i+1
if (len(s3Connections)==0):
raise("No AWS crdentials provided")
MAXIMUM_USER_NAME_LENGTH = 63
## connect to Synapse
syn = Synapse()
syn.login(synapseUserId, synapseUserPw)
ownUserProfile = syn.getUserProfile()
ownPrincipalId = ownUserProfile['ownerId']
## get all Participants for Evaluation
participants = syn.restGET("/evaluation/"+evaluationId+'/participant?limit=99999')['results']
print "total number of results: "+str(len(participants))
## For each participant
participantList = []
anyNewUsers = False
for i,part in enumerate(participants):
## add to a list the user's first name, last name, email address, user name and principal ID
## "user name" is defined as <firstName>.<lastName>.<principalId>.wcpe.sagebase.org
partId = part['userId']
up = syn.getUserProfile(partId)
# scrub for illegal characters, control string length, convert to lower case
userName = createUserName(up['firstName'], up['lastName'], partId, MAXIMUM_USER_NAME_LENGTH)
participantList.append({'firstName':up['firstName'], 'lastName':up['lastName'], 'email':up['email'], 'userName':userName, 'bucketName':userName, 'principalId':partId})
print userName
)
i = i + 1
if len(s3Connections) == 0:
raise ("No AWS crdentials provided")
MAXIMUM_USER_NAME_LENGTH = 63
## connect to Synapse
syn = Synapse()
syn.login(synapseUserId, synapseUserPw)
ownUserProfile = syn.getUserProfile()
ownPrincipalId = ownUserProfile["ownerId"]
## get all Participants for Evaluation
participants = syn.restGET("/evaluation/" + evaluationId + "/participant?limit=99999")["results"]
print "total number of results: " + str(len(participants))
## For each participant
participantList = []
anyNewUsers = False
for i, part in enumerate(participants):
## add to a list the user's first name, last name, email address, user name and principal ID
## "user name" is defined as <firstName>.<lastName>.<principalId>.wcpe.sagebase.org
partId = part["userId"]
up = syn.getUserProfile(partId)
# scrub for illegal characters, control string length, convert to lower case
userName = createUserName(up["firstName"], up["lastName"], partId, MAXIMUM_USER_NAME_LENGTH)
participantList.append(
{
"firstName": up["firstName"],