def __init__(self, parent=None, paramfile=None, paramdictname=None):
super(Paradigm, self).__init__(parent)
# -- Read settings --
smServerType = rigsettings.STATE_MACHINE_TYPE
# -- Create dispatcher --
self.dispatcherModel = dispatcher.Dispatcher(serverType=smServerType,interval=0.1)
self.dispatcherView = dispatcher.DispatcherGUI(model=self.dispatcherModel)
# -- Add parameters --
self.params = paramgui.Container()
self.params['periodOn'] = paramgui.NumericParam('Period On',value=0.5,
group='Timing Parameters')
self.params['periodOff'] = paramgui.NumericParam('Period Off',value=1,
group='Timing Parameters')
timingParams = self.params.layout_group('Timing Parameters')
self.params['irrelevant1'] = paramgui.MenuParam('Irrelevant 1',
['one_item','another_item'],
value=0,group='Irrelevant')
self.params['irrelevant2'] = paramgui.StringParam('Irrelevant 2',value='nothing',
group='Irrelevant')
irrelevantParams = self.params.layout_group('Irrelevant')
# -- Add graphical widgets to main window --
centralWidget = QtGui.QWidget()
layoutMain = QtGui.QHBoxLayout()
layoutMain.addWidget(self.dispatcherView)
layoutOneColumn = QtGui.QVBoxLayout()
layoutOneColumn.addWidget(timingParams)
layoutOneColumn.addWidget(irrelevantParams)
layoutMain.addLayout(layoutOneColumn)
centralWidget.setLayout(layoutMain)
self.setCentralWidget(centralWidget)
# -- Center in screen --
paramgui.center_in_screen(self)
# -- Connect signals from dispatcher --
self.dispatcherModel.prepareNextTrial.connect(self.prepare_next_trial)
self.dispatcherModel.timerTic.connect(self.timer_tic)
def __init__(self, parent=None, paramfile=None, paramdictname=None):
'''
Set up the taskontrol core modules, add parameters to the GUI, and
initialize the sound server.
'''
super(Paradigm, self).__init__(parent)
self.name = 'am_tuning_curve'
# -- Read settings --
smServerType = rigsettings.STATE_MACHINE_TYPE
# -- Create the speaker calibration object
self.spkCal = speakercalibration.Calibration(rigsettings.SPEAKER_CALIBRATION_SINE)
self.noiseCal = speakercalibration.NoiseCalibration(rigsettings.SPEAKER_CALIBRATION_NOISE)
# -- Create dispatcher --
self.dispatcherModel = dispatcher.Dispatcher(serverType=smServerType,
interval=0.1)
self.dispatcherView = dispatcher.DispatcherGUI(model=self.dispatcherModel)
# -- Manual control of outputs --
self.manualControl = manualcontrol.ManualControl(self.dispatcherModel.statemachine)
# -- Add parameters --
self.params = paramgui.Container()
self.params['experimenter'] = paramgui.StringParam('Experimenter',
value='santiago',
group='Parameters')
self.params['subject'] = paramgui.StringParam('Subject',value='test030',
group='Parameters')
self.params['minFreq'] = paramgui.NumericParam('Min Frequency (Hz)',
value=2000,
group='Parameters')
self.params['maxFreq'] = paramgui.NumericParam('Max Frequency (Hz)',
value=40000,
group='Parameters')
self.params['numTones'] = paramgui.NumericParam('Number of Frequencies',
value=16,
group='Parameters')
self.params['minInt'] = paramgui.NumericParam('Min Intensity (dB SPL)',
value=60,
group='Parameters')
self.params['maxInt'] = paramgui.NumericParam('Max Intensity (dB SPL)',
value=60,
group='Parameters')
self.params['numInt'] = paramgui.NumericParam('Number of Intensities',
value=1,
group='Parameters')
self.params['stimDur'] = paramgui.NumericParam('Stimulus Duration (s)',
value=0.01,
group='Parameters')
'''
self.params['isiMin'] = paramgui.NumericParam('Minimum Interstimulus Interval (s)',
value=1,
group='Parameters')
self.params['isiMax'] = paramgui.NumericParam('Maximum Interstimulus Interval',
value=3,
group='Parameters')
'''
self.params['isiMean'] = paramgui.NumericParam('Interstimulus interval mean (s)',
value=2,
group='Parameters')
self.params['isiHalfRange'] = paramgui.NumericParam('+/-',
value=1,
group='Parameters')
# self.params['noiseAmp'] = paramgui.NumericParam('Amplitude in Noise-Mode',
# value=0.3,
# group='Parameters')
self.params['randomMode'] = paramgui.MenuParam('Presentation Mode',
['Ordered','Random'],
value=1,group='Parameters')
self.params['stimType'] = paramgui.MenuParam('Stim Type',
['Sine','Chord', 'Noise', 'AM', 'Laser', 'LaserTrain', 'Light', 'SineLaser'],
value=2,group='Parameters')
self.params['currentFreq'] = paramgui.NumericParam('Current Frequency (Hz)',
value=0, units='Hz',
enabled=False,
group='Parameters')
self.params['currentIntensity'] = paramgui.NumericParam('Target Intensity',
value=0,
enabled=False,
group='Parameters')
self.params['currentAmpL'] = paramgui.NumericParam('Current Amplitude - L',value=0,
enabled=False,
group='Parameters',
decimals=4)
self.params['currentAmpR'] = paramgui.NumericParam('Current Amplitude - R',value=0,
enabled=False,
group='Parameters',
decimals=4)
self.params['laserOn'] = paramgui.NumericParam('Laser On', value=0, enabled=False,
group='Parameters')
self.params['laserProbability'] = paramgui.NumericParam('Laser Probability (s)', value=0,
group='Parameters')
self.params['laserDuration'] = paramgui.NumericParam('Laser Duration (s)', value=0,
group='Parameters')
self.params['laserOnset'] = paramgui.NumericParam('Laser Onset (s)', value=0,
group='Parameters')
timingParams = self.params.layout_group('Parameters')
# -- Load parameters from a file --
self.params.from_file(paramfile,paramdictname)
# -- Create an empty state matrix --
self.sm = statematrix.StateMatrix(inputs=rigsettings.INPUTS,
outputs=rigsettings.OUTPUTS,
readystate='readyForNextTrial')
# -- Module for savng the data --
self.saveData = savedata.SaveData(rigsettings.DATA_DIR,
remotedir=rigsettings.REMOTE_DIR)
self.saveData.checkInteractive.setChecked(True)
# -- Add graphical widgets to main window --
self.centralWidget = QtGui.QWidget()
layoutMain = QtGui.QHBoxLayout() #Create a main layout and two columns
layoutCol1 = QtGui.QVBoxLayout()
layoutCol2 = QtGui.QVBoxLayout()
layoutMain.addLayout(layoutCol1) #Add the columns to the main layout
layoutMain.addLayout(layoutCol2)
layoutCol1.addWidget(self.dispatcherView) #Add the dispatcher to col1
layoutCol1.addWidget(self.saveData)
layoutCol1.addWidget(self.manualControl)
self.clearButton = QtGui.QPushButton('Clear Stim List', self)
self.clearButton.clicked.connect(self.clear_tone_list)
layoutCol1.addWidget(self.clearButton)
layoutCol2.addWidget(timingParams) #Add the parameter GUI to column 2
self.centralWidget.setLayout(layoutMain) #Assign the layouts to the main window
self.setCentralWidget(self.centralWidget)
# -- Connect signals from dispatcher --
#prepare_next_trial is sent whenever the dispatcher reaches the end of
#the current trial.
self.dispatcherModel.prepareNextTrial.connect(self.prepare_next_trial)
# -- Connect the save data button --
self.saveData.buttonSaveData.clicked.connect(self.save_to_file)
print "Connecting to sound server"
print '***** FIXME: HARDCODED TIME DELAY TO WAIT FOR SERIAL PORT! *****'
time.sleep(0.2)
self.soundClient = soundclient.SoundClient()
self.soundClient.start()
#soundFreq = self.params['soundFreq'].get_value()
# -- Initialize the list of trial parameters --
self.trialParams = []
self.soundParamList = []
def __init__(self, parent=None, paramfile=None, paramdictname=None):
'''
Set up the taskontrol core modules, add parameters to the GUI, and
initialize the sound server.
'''
super(Paradigm, self).__init__(parent)
self.name = 'bandwidth_am'
# -- Read settings --
smServerType = rigsettings.STATE_MACHINE_TYPE
# -- Create the speaker calibration objects
self.noiseCal = speakercalibration.NoiseCalibration(
rigsettings.SPEAKER_CALIBRATION_NOISE)
self.toneCal = speakercalibration.Calibration(
rigsettings.SPEAKER_CALIBRATION_SINE)
# -- Create dispatcher --
self.dispatcherModel = dispatcher.Dispatcher(serverType=smServerType,
interval=0.1)
self.dispatcherView = dispatcher.DispatcherGUI(
model=self.dispatcherModel)
# -- Manual control of outputs --
self.manualControl = manualcontrol.ManualControl(
self.dispatcherModel.statemachine)
# -- Add parameters --
self.params = paramgui.Container()
self.params['experimenter'] = paramgui.StringParam('Experimenter',
value='santiago',
group='Session')
self.params['subject'] = paramgui.StringParam('Subject',
value='test030',
group='Session')
self.params['charFreq'] = paramgui.NumericParam(
'Characteristic Frequency (Hz)', value=8000, group='Session')
self.params['modRate'] = paramgui.NumericParam('Modulation rate',
value=2.0,
group='Session')
sessionParams = self.params.layout_group('Session')
self.params['minAmp'] = paramgui.NumericParam(
'Min noise amplitude (dB)', value=40, group='Sound Parameters')
self.params['maxAmp'] = paramgui.NumericParam(
'Max noise amplitude (dB)', value=60, group='Sound Parameters')
self.params['numAmps'] = paramgui.NumericParam(
'Number of Amplitudes', value=2, group='Sound Parameters')
self.params['minBand'] = paramgui.NumericParam(
'Minimum bandwidth (octaves)',
value=0.25,
group='Sound Parameters')
self.params['maxBand'] = paramgui.NumericParam(
'Maximum bandwidth (octaves)', value=2.0, group='Sound Parameters')
self.params['numBands'] = paramgui.NumericParam(
'Number of bandwidths', value=4, group='Sound Parameters')
# -- Added extremes as separate option in case we want to add other stim types (unmodulated white noise) --
self.params['whiteNoise'] = paramgui.MenuParam(
'Add white noise to bandwidths?', ['yes', 'no'],
value=0,
group='Sound Parameters')
self.params['pureTone'] = paramgui.MenuParam(
'Add pure tone to bandwidths?', ['yes', 'no'],
value=1,
group='Sound Parameters')
self.params['soundType'] = paramgui.MenuParam(
'Sound type', ['full_spectrum', 'harmonics', 'both'],
value=0,
group='Sound Parameters')
self.params['stimDur'] = paramgui.NumericParam(
'Stimulus Duration (s)', value=1.0, group='Sound Parameters')
self.params['isiMean'] = paramgui.NumericParam(
'Interstimulus interval mean (s)',
value=2,
group='Sound Parameters')
self.params['isiHalfRange'] = paramgui.NumericParam(
'+/-', value=1, group='Sound Parameters')
self.params['randomMode'] = paramgui.MenuParam(
'Presentation Mode', ['Ordered', 'Random'],
value=1,
group='Sound Parameters')
soundParams = self.params.layout_group('Sound Parameters')
self.params['signalType'] = paramgui.MenuParam(
'Include pure tone signal?', ['yes', 'no'],
value=1,
group='Signal Parameters')
self.params['minSNR'] = paramgui.NumericParam(
'Minimum signal to noise',
value=10,
decimals=0,
units='dB',
group='Signal Parameters')
self.params['maxSNR'] = paramgui.NumericParam(
'Maximum signal to noise',
value=20,
decimals=0,
units='dB',
group='Signal Parameters')
self.params['numSNRs'] = paramgui.NumericParam(
'Number of SNRs',
value=3,
decimals=0,
units='dB',
group='Signal Parameters')
signalParams = self.params.layout_group('Signal Parameters')
self.params['laserPercent'] = paramgui.MenuParam(
'Percentage of trials with laser', ['0%', '50%', '100%'],
value=1,
group='Laser Parameters')
self.params['laserType'] = paramgui.MenuParam('Laser colour',
['blue', 'green'],
value=1,
group='Laser Parameters')
self.params['laserFrontOverhang'] = paramgui.NumericParam(
'Laser Front Overhang',
value=0,
group='Laser Parameters',
decimals=1)
self.params['laserBackOverhang'] = paramgui.NumericParam(
'Laser Back Overhang',
value=0,
group='Laser Parameters',
decimals=1)
laserParams = self.params.layout_group('Laser Parameters')
self.params['currentAmp'] = paramgui.NumericParam(
'Current Amplitude',
value=0,
enabled=False,
group='Current Trial',
decimals=1)
self.params['currentBand'] = paramgui.NumericParam(
'Current Bandwidth',
value=0,
enabled=False,
group='Current Trial',
decimals=2)
self.params['currentSNR'] = paramgui.NumericParam(
'Current SNR',
value=0.0,
decimals=1,
units='dB',
enabled=False,
group='Current Trial')
self.params['laserTrial'] = paramgui.NumericParam(
'Laser Trial?',
value=0,
enabled=False,
group='Current Trial',
decimals=0)
self.params['harmTrialType'] = paramgui.NumericParam(
'Harmonics Trial?',
value=0,
enabled=False,
group='Current Trial',
decimals=0)
trialParams = self.params.layout_group('Current Trial')
# -- Load parameters from a file --
self.params.from_file(paramfile, paramdictname)
# -- Create an empty state matrix --
self.sm = statematrix.StateMatrix(inputs=rigsettings.INPUTS,
outputs=rigsettings.OUTPUTS,
readystate='readyForNextTrial')
# -- Module for saving the data --
self.saveData = savedata.SaveData(rigsettings.DATA_DIR,
remotedir=rigsettings.REMOTE_DIR)
self.saveData.checkInteractive.setChecked(True)
# -- Add graphical widgets to main window --
self.centralWidget = QtGui.QWidget()
layoutMain = QtGui.QHBoxLayout() #Create a main layout and two columns
layoutCol1 = QtGui.QVBoxLayout()
layoutCol2 = QtGui.QVBoxLayout()
layoutMain.addLayout(layoutCol1) #Add the columns to the main layout
layoutMain.addLayout(layoutCol2)
layoutCol1.addWidget(self.dispatcherView) #Add the dispatcher to col1
layoutCol1.addWidget(self.saveData)
layoutCol1.addWidget(self.manualControl)
layoutCol1.addWidget(trialParams)
self.clearButton = QtGui.QPushButton('Clear Stim List', self)
self.clearButton.clicked.connect(self.clear_tone_list)
layoutCol1.addWidget(self.clearButton)
layoutCol2.addWidget(sessionParams) #Add the parameter GUI to column 2
layoutCol2.addWidget(soundParams)
layoutCol2.addWidget(signalParams)
layoutCol2.addWidget(laserParams)
self.centralWidget.setLayout(
layoutMain) #Assign the layouts to the main window
self.setCentralWidget(self.centralWidget)
# -- Connect signals from dispatcher --
#prepare_next_trial is sent whenever the dispatcher reaches the end of
#the current trial.
self.dispatcherModel.prepareNextTrial.connect(self.prepare_next_trial)
# -- Connect the save data button --
self.saveData.buttonSaveData.clicked.connect(self.save_to_file)
print "Connecting to sound server"
print '***** FIXME: HARDCODED TIME DELAY TO WAIT FOR SERIAL PORT! *****'
time.sleep(0.2)
self.soundClient = soundclient.SoundClient()
self.soundClient.start()
#soundFreq = self.params['soundFreq'].get_value()
# -- Initialize the list of trial parameters --
self.trialParams = []
self.soundParamList = []
def __init__(self, parent=None):
super(Protocol, self).__init__(parent)
# -- Read settings --
smhost = rigsettings.STATE_MACHINE_SERVER
# -- Add widgets --
centralWidget = QtGui.QWidget()
self.dispatcher = dispatcher.Dispatcher(host=smhost,
interval=0.3,
connectnow=True,
dummy=True)
self.saveData = savedata.SaveData()
self.evplot = eventsplot.EventsPlot(xlim=[0, 4])
self.manualControl = manualcontrol.ManualControl(self.dispatcher)
# -- Parameters --
self.params = paramgui.Container()
self.params['experimenter'] = paramgui.StringParam(
'Experimenter',
value='santiago',
group='Session info',
history=False)
self.params['animal'] = paramgui.StringParam('Animal',
value='saja000',
group='Session info',
history=False)
self.params['soundDuration'] = paramgui.NumericParam('Sound Duration',
value=0.1,
group='Sound')
self.params['irrelevantParam1'] = paramgui.NumericParam('Irrelevant 1',
value=0,
group='Sound')
self.params['irrelevantParam2'] = paramgui.NumericParam('Irrelevant 2',
value=0,
group='Sound')
self.params['chooseNumber'] = paramgui.MenuParam(
'MenuParam', ('One', 'Two', 'Three'), group='Sound')
self.params['anotherNumber'] = paramgui.MenuParam(
'AnotherParam', ('VerLongOne', 'VerLongTwo', 'VerLongThree'),
group='Sound')
for ind in range(6):
self.params['par%d' % ind] = paramgui.NumericParam(
'Param%d' % ind, value=1.0 * (ind + 1), group='OtherParams')
groupSessionInfo = self.params.layoutGroup('Session info')
groupSound = self.params.layoutGroup('Sound')
groupOther = self.params.layoutGroup('OtherParams')
layoutMain = QtGui.QVBoxLayout()
layoutTop = QtGui.QVBoxLayout()
layoutBottom = QtGui.QHBoxLayout()
layoutCol0 = QtGui.QVBoxLayout()
layoutCol1 = QtGui.QVBoxLayout()
layoutCol2 = QtGui.QVBoxLayout()
layoutMain.addLayout(layoutTop)
layoutMain.addStretch()
layoutMain.addLayout(layoutBottom)
layoutTop.addWidget(self.evplot)
layoutBottom.addLayout(layoutCol0)
layoutBottom.addLayout(layoutCol1)
layoutBottom.addLayout(layoutCol2)
layoutCol0.addWidget(self.saveData)
layoutCol0.addWidget(groupSessionInfo)
layoutCol0.addWidget(self.dispatcher)
layoutCol1.addWidget(self.manualControl)
layoutCol1.addWidget(groupSound)
layoutCol2.addWidget(groupOther)
centralWidget.setLayout(layoutMain)
self.setCentralWidget(centralWidget)
# --- Create state matrix ---
self.sm = statematrix.StateMatrix(readystate=('ready_next_trial', 1))
self.setStateMatrix()
# -- Setup events plot --
#self.evplot.setStatesColor(np.random.rand(6))
'''
statesColor = [ [255,0,0],[0,255,0],[0,0,255],\
[255,255,0],[255,0,255],[0,255,255] ]
self.evplot.setStatesColor(statesColor)
'''
statesColorDict = {
'wait_for_cpoke': [127, 127, 255],
'play_target': [255, 255, 0],
'wait_for_apoke': [191, 191, 255],
'reward': [0, 255, 0],
'punish': [255, 0, 0],
'ready_next_trial': [0, 0, 0]
}
self.evplot.setStatesColor(statesColorDict, self.sm.getStatesDict())
# -- Connect signals from dispatcher --
self.connect(self.dispatcher, QtCore.SIGNAL('PrepareNextTrial'),
self.prepareNextTrial)
self.connect(self.dispatcher, QtCore.SIGNAL('StartNewTrial'),
self.startNewTrial)
self.connect(self.dispatcher, QtCore.SIGNAL('TimerTic'), self.timerTic)
self.connect(self.saveData.buttonSaveData, QtCore.SIGNAL('clicked()'),
self.fileSave)
# -- Connect messenger --
self.mymess = messenger.Messenger()
self.connect(self.mymess.emitter, QtCore.SIGNAL('NewMessage'),
self.showMessage)
self.mymess.send('Created window')
def __init__(self, parent=None, paramfile=None, paramdictname=None):
super(Paradigm, self).__init__(parent)
# -- Performance dynamics plot --
performancedynamicsplot.set_pg_colors(self)
self.myPerformancePlot = performancedynamicsplot.PerformanceDynamicsPlot(
nTrials=400, winsize=10)
# -- Add parameters --
self.params['timeWaterValveL'] = paramgui.NumericParam(
'Time valve left', value=0.03, units='s', group='Water delivery')
self.params['timeWaterValveC'] = paramgui.NumericParam(
'Time valve center', value=0.03, units='s', group='Water delivery')
self.params['timeWaterValveR'] = paramgui.NumericParam(
'Time valve right', value=0.03, units='s', group='Water delivery')
waterDelivery = self.params.layout_group('Water delivery')
self.params['outcomeMode'] = paramgui.MenuParam(
'Outcome mode', [
'sides_direct', 'direct', 'on_next_correct', 'only_if_correct',
'simulated'
],
value=3,
group='Choice parameters')
self.params['antibiasMode'] = paramgui.MenuParam(
'Anti-bias mode', ['off', 'repeat_mistake'],
value=0,
group='Choice parameters')
choiceParams = self.params.layout_group('Choice parameters')
self.params['delayToTargetMean'] = paramgui.NumericParam(
'Mean delay to target',
value=0.3,
units='s',
group='Timing parameters')
self.params['delayToTargetHalfRange'] = paramgui.NumericParam(
'+/-', value=0.05, units='s', group='Timing parameters')
self.params['delayToTarget'] = paramgui.NumericParam(
'Delay to target',
value=0.3,
units='s',
group='Timing parameters',
enabled=False,
decimals=3)
self.params['targetDuration'] = paramgui.NumericParam(
'Target duration', value=0.1, units='s', group='Timing parameters')
self.params['rewardAvailability'] = paramgui.NumericParam(
'Reward availability',
value=4,
units='s',
group='Timing parameters')
self.params['punishTimeError'] = paramgui.NumericParam(
'Punishment (error)',
value=0,
units='s',
group='Timing parameters')
self.params['punishTimeEarly'] = paramgui.NumericParam(
'Punishment (early)',
value=0,
units='s',
group='Timing parameters')
timingParams = self.params.layout_group('Timing parameters')
self.params['trialsPerBlock'] = paramgui.NumericParam(
'Trials per block',
value=300,
units='trials (0=no-switch)',
group='Switching parameters')
self.params['currentBlock'] = paramgui.MenuParam(
'Current block', ['mid_boundary', 'low_boundary', 'high_boundary'],
value=0,
group='Switching parameters')
switchingParams = self.params.layout_group('Switching parameters')
self.params['psycurveMode'] = paramgui.MenuParam(
'PsyCurve Mode', ['off', 'uniform'],
value=0,
group='Psychometric parameters')
self.params['psycurveNfreq'] = paramgui.NumericParam(
'N frequencies',
value=8,
decimals=0,
group='Psychometric parameters')
psychometricParams = self.params.layout_group(
'Psychometric parameters')
self.params['automationMode'] = paramgui.MenuParam(
'Automation Mode', ['off', 'increase_delay'],
value=0,
group='Automation')
automationParams = self.params.layout_group('Automation')
# 5000, 7000, 9800 (until 2014-03-19)
self.params['highFreq'] = paramgui.NumericParam(
'High freq', value=16000, units='Hz', group='Sound parameters')
self.params['midFreq'] = paramgui.NumericParam(
'Middle freq', value=7000, units='Hz', group='Sound parameters')
self.params['lowFreq'] = paramgui.NumericParam(
'Low freq', value=3000, units='Hz', group='Sound parameters')
self.params['targetFrequency'] = paramgui.NumericParam(
'Target freq',
value=0,
decimals=0,
units='Hz',
enabled=False,
group='Sound parameters')
self.params['targetIntensityMode'] = paramgui.MenuParam(
'Intensity mode', ['fixed', 'randMinus20'],
value=1,
group='Sound parameters')
self.params['targetMaxIntensity'] = paramgui.NumericParam(
'Max intensity',
value=60,
units='dB-SPL',
group='Sound parameters')
self.params['targetIntensity'] = paramgui.NumericParam(
'Intensity',
value=0.0,
units='dB-SPL',
enabled=False,
group='Sound parameters')
'''
self.params['targetAmplitudeHigh'] = paramgui.NumericParam('AmplitudeHigh',value=0.0,units='[0-1]',
enabled=False,decimals=4,group='Sound parameters')
self.params['targetAmplitudeMid'] = paramgui.NumericParam('AmplitudeMid',value=0.0,units='[0-1]',
enabled=False,decimals=4,group='Sound parameters')
self.params['targetAmplitudeLow'] = paramgui.NumericParam('AmplitudeLow',value=0.0,units='[0-1]',
enabled=False,decimals=4,group='Sound parameters')
'''
self.params['targetAmplitude'] = paramgui.NumericParam(
'Target amplitude',
value=0.0,
units='[0-1]',
enabled=False,
decimals=4,
group='Sound parameters')
self.params['punishSoundAmplitude'] = paramgui.NumericParam(
'Punish amplitude',
value=0.01,
units='[0-1]',
enabled=False,
group='Sound parameters')
'''
self.params['highFreq'] = paramgui.NumericParam('High freq',value=500,
units='Hz',group='Sound parameters')
self.params['midFreq'] = paramgui.NumericParam('Middle freq',value=440,
units='Hz',group='Sound parameters')
self.params['lowFreq'] = paramgui.NumericParam('Low freq',value=400,
units='Hz',group='Sound parameters')
#4200, 9200, 20200
'''
soundParams = self.params.layout_group('Sound parameters')
self.params['nValid'] = paramgui.NumericParam('N valid',
value=0,
units='',
enabled=False,
group='Report')
self.params['nRewarded'] = paramgui.NumericParam('N rewarded',
value=0,
units='',
enabled=False,
group='Report')
reportParams = self.params.layout_group('Report')
#
self.params['experimenter'].set_value('santiago')
self.params['subject'].set_value('test')
# -- Add graphical widgets to main window --
self.centralWidget = QtGui.QWidget()
layoutMain = QtGui.QVBoxLayout()
layoutTop = QtGui.QVBoxLayout()
layoutBottom = QtGui.QHBoxLayout()
layoutCol1 = QtGui.QVBoxLayout()
layoutCol2 = QtGui.QVBoxLayout()
layoutCol3 = QtGui.QVBoxLayout()
layoutCol4 = QtGui.QVBoxLayout()
layoutMain.addLayout(layoutTop)
#layoutMain.addStretch()
layoutMain.addSpacing(0)
layoutMain.addLayout(layoutBottom)
layoutTop.addWidget(self.mySidesPlot)
layoutTop.addWidget(self.myPerformancePlot)
layoutBottom.addLayout(layoutCol1)
layoutBottom.addLayout(layoutCol2)
layoutBottom.addLayout(layoutCol3)
layoutBottom.addLayout(layoutCol4)
layoutCol1.addWidget(self.saveData)
layoutCol1.addWidget(self.sessionInfo)
layoutCol1.addWidget(self.dispatcherView)
layoutCol2.addWidget(self.manualControl)
layoutCol2.addStretch()
layoutCol2.addWidget(waterDelivery)
layoutCol2.addStretch()
layoutCol2.addWidget(choiceParams)
layoutCol2.addStretch()
layoutCol3.addWidget(timingParams)
layoutCol3.addStretch()
layoutCol3.addWidget(switchingParams)
layoutCol3.addStretch()
layoutCol3.addWidget(psychometricParams)
layoutCol3.addStretch()
layoutCol4.addWidget(automationParams)
layoutCol3.addStretch()
layoutCol4.addWidget(soundParams)
layoutCol3.addStretch()
layoutCol4.addWidget(reportParams)
layoutCol4.addStretch()
self.centralWidget.setLayout(layoutMain)
self.setCentralWidget(self.centralWidget)
# -- Add variables for storing results --
maxNtrials = 4000 # Preallocating space for each vector makes things easier
self.results = arraycontainer.Container()
self.results.labels['rewardSide'] = {'left': 0, 'right': 1}
self.results['rewardSide'] = np.random.randint(2, size=maxNtrials)
self.results.labels['choice'] = {'left': 0, 'right': 1, 'none': 2}
self.results['choice'] = np.empty(maxNtrials, dtype=int)
self.results.labels['outcome'] = {
'correct': 1,
'error': 0,
'invalid': 2,
'free': 3,
'nochoice': 4,
'aftererror': 5,
'aborted': 6
}
self.results['outcome'] = np.empty(maxNtrials, dtype=int)
# Saving as bool creates an 'enum' vector, so I'm saving as 'int'
self.results['valid'] = np.zeros(maxNtrials,
dtype='int8') # redundant but useful
self.results['timeTrialStart'] = np.empty(maxNtrials, dtype=float)
self.results['timeTarget'] = np.empty(maxNtrials, dtype=float)
self.results['timeCenterIn'] = np.empty(maxNtrials, dtype=float)
self.results['timeCenterOut'] = np.empty(maxNtrials, dtype=float)
self.results['timeSideIn'] = np.empty(maxNtrials, dtype=float)
# -- Define first block --
import datetime
if (datetime.datetime.now().day % 2):
self.params['currentBlock'].set_string('low_boundary')
else:
self.params['currentBlock'].set_string('high_boundary')
# -- Load parameters from a file --
self.params.from_file(paramfile, paramdictname)
# -- Connect to sound server and define sounds --
print 'Conecting to soundserver...'
print '***** XFIXME: HARDCODED TIME DELAY TO WAIT FOR SERIAL PORT! *****' ### DEBUG
time.sleep(0.2)
self.soundClient = soundclient.SoundClient()
'''
highFreq = self.params['highFreq'].get_value()
lowFreq = self.params['lowFreq'].get_value()
stimDur = self.params['targetDuration'].get_value()
s1 = {'type':'tone', 'frequency':lowFreq, 'duration':stimDur, 'amplitude':0.01}
s2 = {'type':'tone', 'frequency':highFreq, 'duration':stimDur, 'amplitude':0.01}
self.soundClient.set_sound(1,s1)
self.soundClient.set_sound(2,s2)
'''
punishSoundAmplitude = self.params['punishSoundAmplitude'].get_value()
sNoise = {
'type': 'noise',
'duration': 0.5,
'amplitude': punishSoundAmplitude
}
self.punishSoundID = 127
self.soundClient.set_sound(self.punishSoundID, sNoise)
self.soundClient.start()
def __init__(self, parent=None, paramfile=None, paramdictname=None):
super(Paradigm, self).__init__(parent)
# -- Performance dynamics plot --
performancedynamicsplot.set_pg_colors(self)
self.myPerformancePlot = performancedynamicsplot.PerformanceDynamicsPlot(
nTrials=400, winsize=10)
# -- Add parameters --
self.params['timeWaterValveL'] = paramgui.NumericParam(
'Time valve left', value=0.02, units='s', group='Water delivery')
self.params['timeWaterValveC'] = paramgui.NumericParam(
'Time valve center', value=0.02, units='s', group='Water delivery')
self.params['timeWaterValveR'] = paramgui.NumericParam(
'Time valve right', value=0.02, units='s', group='Water delivery')
waterDelivery = self.params.layout_group('Water delivery')
###['sides direct','direct','on next correct','only if correct'],
###['sidesDirect','direct','onNextCorrect','onlyIforrect'],
self.params['outcomeMode'] = paramgui.MenuParam(
'Outcome mode',
['sides_direct', 'direct', 'on_next_correct', 'only_if_correct'],
value=3,
group='Choice parameters')
self.params['antibiasMode'] = paramgui.MenuParam(
'Anti-bias mode', ['off', 'repeat_mistake'],
value=1,
group='Choice parameters')
choiceParams = self.params.layout_group('Choice parameters')
self.params['delayToTarget'] = paramgui.NumericParam(
'Delay to Target', value=0.1, units='s', group='Timing Parameters')
self.params['targetDuration'] = paramgui.NumericParam(
'Target Duration', value=0.1, units='s', group='Timing Parameters')
self.params['rewardAvailability'] = paramgui.NumericParam(
'Reward Availability',
value=4,
units='s',
group='Timing Parameters')
self.params['punishTimeError'] = paramgui.NumericParam(
'Punishment (error)',
value=0,
units='s',
group='Timing Parameters')
self.params['punishTimeEarly'] = paramgui.NumericParam(
'Punishment (early)',
value=0,
units='s',
group='Timing Parameters')
timingParams = self.params.layout_group('Timing Parameters')
self.params['nValid'] = paramgui.NumericParam('N valid',
value=0,
units='',
enabled=False,
group='Report')
self.params['nRewarded'] = paramgui.NumericParam('N rewarded',
value=0,
units='',
enabled=False,
group='Report')
reportParams = self.params.layout_group('Report')
# -- Add graphical widgets to main window --
self.centralWidget = QtGui.QWidget()
layoutMain = QtGui.QVBoxLayout()
layoutTop = QtGui.QVBoxLayout()
layoutBottom = QtGui.QHBoxLayout()
layoutCol1 = QtGui.QVBoxLayout()
layoutCol2 = QtGui.QVBoxLayout()
layoutCol3 = QtGui.QVBoxLayout()
layoutCol4 = QtGui.QVBoxLayout()
layoutMain.addLayout(layoutTop)
#layoutMain.addStretch()
layoutMain.addSpacing(0)
layoutMain.addLayout(layoutBottom)
layoutTop.addWidget(self.mySidesPlot)
layoutTop.addWidget(self.myPerformancePlot)
layoutBottom.addLayout(layoutCol1)
layoutBottom.addLayout(layoutCol2)
layoutBottom.addLayout(layoutCol3)
layoutBottom.addLayout(layoutCol4)
layoutCol1.addWidget(self.saveData)
layoutCol1.addWidget(self.sessionInfo)
layoutCol1.addWidget(self.dispatcherView)
layoutCol2.addWidget(self.manualControl)
layoutCol2.addWidget(waterDelivery)
layoutCol2.addWidget(choiceParams)
layoutCol2.addStretch()
layoutCol3.addWidget(timingParams)
layoutCol3.addStretch()
layoutCol4.addWidget(reportParams)
layoutCol4.addStretch()
self.centralWidget.setLayout(layoutMain)
self.setCentralWidget(self.centralWidget)
# -- Add variables for storing results --
maxNtrials = 4000 # Preallocating space for each vector makes things easier
self.results = arraycontainer.Container()
self.results.labels['rewardSide'] = {'left': 0, 'right': 1}
self.results['rewardSide'] = np.random.randint(2, size=maxNtrials)
self.results.labels['choice'] = {'left': 0, 'right': 1, 'none': 2}
self.results['choice'] = np.empty(maxNtrials, dtype=int)
self.results.labels['outcome'] = {
'correct': 1,
'error': 0,
'invalid': 2,
'free': 3,
'nochoice': 4,
'aftererror': 5,
'aborted': 6
}
self.results['outcome'] = np.empty(maxNtrials, dtype=int)
self.results['timeTrialStart'] = np.empty(maxNtrials, dtype=float)
self.results['timeCenterIn'] = np.empty(maxNtrials, dtype=float)
self.results['timeCenterOut'] = np.empty(maxNtrials, dtype=float)
self.results['timeSideIn'] = np.empty(maxNtrials, dtype=float)
# -- Load parameters from a file --
self.params.from_file(paramfile, paramdictname)
def __init__(self, parent=None, paramfile=None, paramdictname=None):
super(Paradigm, self).__init__(parent)
# -- Performance dynamics plot --
performancedynamicsplot.set_pg_colors(self)
self.myPerformancePlot = performancedynamicsplot.PerformanceDynamicsPlot(
nTrials=400, winsize=10)
# -- Add parameters --
self.params['timeWaterValveL'] = paramgui.NumericParam(
'Time valve left',
value=0.03,
enabled=False,
units='s',
group='Water delivery')
self.params['baseWaterValveL'] = paramgui.NumericParam(
'Base time left', value=0.03, units='s', group='Water delivery')
self.params['factorWaterValveL'] = paramgui.NumericParam(
'Factor left', value=1, units='s', group='Water delivery')
self.params['timeWaterValveR'] = paramgui.NumericParam(
'Time valve right',
value=0.03,
enabled=False,
units='s',
group='Water delivery')
self.params['baseWaterValveR'] = paramgui.NumericParam(
'Base time right', value=0.03, units='s', group='Water delivery')
self.params['factorWaterValveR'] = paramgui.NumericParam(
'Factor right', value=1, units='s', group='Water delivery')
waterDelivery = self.params.layout_group('Water delivery')
self.params['outcomeMode'] = paramgui.MenuParam(
'Outcome mode', [
'sides_direct', 'direct', 'on_next_correct', 'only_if_correct',
'simulated'
],
value=3,
group='Choice parameters')
self.params['antibiasMode'] = paramgui.MenuParam(
'Anti-bias mode', ['off', 'repeat_mistake'],
value=0,
group='Choice parameters')
choiceParams = self.params.layout_group('Choice parameters')
self.params['delayToTargetMean'] = paramgui.NumericParam(
'Mean delay to target',
value=0.04,
units='s',
group='Timing parameters')
self.params['delayToTargetHalfRange'] = paramgui.NumericParam(
'+/-', value=0.0, units='s', group='Timing parameters')
self.params['delayToTarget'] = paramgui.NumericParam(
'Delay to target',
value=0.3,
units='s',
group='Timing parameters',
enabled=False,
decimals=3)
self.params['targetDuration'] = paramgui.NumericParam(
'Target duration', value=0.5, units='s', group='Timing parameters')
self.params['rewardAvailability'] = paramgui.NumericParam(
'Reward availability',
value=4,
units='s',
group='Timing parameters')
self.params['punishTimeError'] = paramgui.NumericParam(
'Punishment (error)',
value=0,
units='s',
group='Timing parameters')
self.params['punishTimeEarly'] = paramgui.NumericParam(
'Punishment (early)',
value=0,
units='s',
group='Timing parameters')
timingParams = self.params.layout_group('Timing parameters')
self.params['automationMode'] = paramgui.MenuParam('Automation Mode', [
'off', 'increase_delay', 'same_left_right', 'same_right_left',
'left_right_left'
],
value=0,
group='Automation')
automationParams = self.params.layout_group('Automation')
self.params['threshMode'] = paramgui.MenuParam(
'Threshold Mode', ['max_only', 'linear', 'exponential'],
value=0,
group='Threshold detection parameters')
# -- tone intensity refers to difference between tone and masking noise --
self.params['minSNR'] = paramgui.NumericParam(
'Minimum signal to noise',
value=2,
decimals=1,
units='dB',
group='Threshold detection parameters')
self.params['maxSNR'] = paramgui.NumericParam(
'Maximum signal to noise',
value=20,
decimals=0,
units='dB',
group='Threshold detection parameters')
self.params['numSNRs'] = paramgui.NumericParam(
'Number of SNRs',
value=2,
decimals=0,
units='dB',
group='Threshold detection parameters')
threshParams = self.params.layout_group(
'Threshold detection parameters')
self.params['bandMode'] = paramgui.MenuParam(
'Bandwidth Mode', ['white_only', 'max_only', 'uniform'],
value=0,
group='Bandwidth parameters')
self.params['minBand'] = paramgui.NumericParam(
'Minimum bandwidth',
value=0.25,
decimals=2,
units='octaves',
group='Bandwidth parameters')
self.params['maxBand'] = paramgui.NumericParam(
'Maximum bandwidth',
value=4.0,
decimals=2,
units='octaves',
group='Bandwidth parameters')
self.params['numBands'] = paramgui.NumericParam(
'Number of bandwidths',
value=5,
decimals=0,
group='Bandwidth parameters')
self.params['includeWhite'] = paramgui.MenuParam(
'Include white noise?', ['yes', 'no'],
value=0,
group='Bandwidth parameters')
bandParams = self.params.layout_group('Bandwidth parameters')
self.params['noiseMode'] = paramgui.MenuParam(
'Masker amplitude mode', ['max_only', 'uniform'],
value=1,
group='Masker amplitude parameters')
# -- power refers to average power of noise stimulus
self.params['minNoiseAmp'] = paramgui.NumericParam(
'Minimum noise power',
value=30,
decimals=0,
units='dB',
group='Masker amplitude parameters')
self.params['maxNoiseAmp'] = paramgui.NumericParam(
'Maximum noise power',
value=40,
decimals=0,
units='dB',
group='Masker amplitude parameters')
self.params['numAmps'] = paramgui.NumericParam(
'Number of noise amplitudes',
value=2,
decimals=0,
group='Masker amplitude parameters')
noiseParams = self.params.layout_group('Masker amplitude parameters')
self.params['toneFreq'] = paramgui.NumericParam(
'Tone frequency', value=8000, units='Hz', group='Sound parameters')
self.params['modRate'] = paramgui.NumericParam(
'Modulation Rate', value=8, units='Hz', group='Sound parameters')
self.params['punishSoundAmplitude'] = paramgui.NumericParam(
'Punish amplitude',
value=0.01,
units='[0-1]',
enabled=True,
group='Sound parameters')
soundParams = self.params.layout_group('Sound parameters')
self.params['currentBand'] = paramgui.NumericParam(
'Trial bandwidth',
value=0.0,
decimals=2,
units='octaves',
enabled=False,
group='Current Trial')
self.params['currentNoiseAmp'] = paramgui.NumericParam(
'Trial noise power',
value=0.0,
decimals=0,
units='dB',
enabled=False,
group='Current Trial')
self.params['currentSNR'] = paramgui.NumericParam(
'Trial SNR',
value=0.0,
decimals=1,
units='dB',
enabled=False,
group='Current Trial')
trialParams = self.params.layout_group('Current Trial')
self.params['nValid'] = paramgui.NumericParam('N valid',
value=0,
units='',
enabled=False,
group='Report')
self.params['nRewarded'] = paramgui.NumericParam('N rewarded',
value=0,
units='',
enabled=False,
group='Report')
reportParams = self.params.layout_group('Report')
#
self.params['experimenter'].set_value('santiago')
self.params['subject'].set_value('test')
# -- Add graphical widgets to main window --
self.centralWidget = QtGui.QWidget()
layoutMain = QtGui.QVBoxLayout()
layoutTop = QtGui.QVBoxLayout()
layoutBottom = QtGui.QHBoxLayout()
layoutCol1 = QtGui.QVBoxLayout()
layoutCol2 = QtGui.QVBoxLayout()
layoutCol3 = QtGui.QVBoxLayout()
layoutCol4 = QtGui.QVBoxLayout()
layoutMain.addLayout(layoutTop)
#layoutMain.addStretch()
layoutMain.addSpacing(0)
layoutMain.addLayout(layoutBottom)
layoutTop.addWidget(self.mySidesPlot)
layoutTop.addWidget(self.myPerformancePlot)
layoutBottom.addLayout(layoutCol1)
layoutBottom.addLayout(layoutCol2)
layoutBottom.addLayout(layoutCol3)
layoutBottom.addLayout(layoutCol4)
layoutCol1.addWidget(self.saveData)
layoutCol1.addWidget(self.sessionInfo)
layoutCol1.addWidget(self.dispatcherView)
layoutCol2.addWidget(self.manualControl)
layoutCol2.addStretch()
layoutCol2.addWidget(waterDelivery)
layoutCol2.addStretch()
layoutCol2.addWidget(choiceParams)
layoutCol2.addStretch()
layoutCol3.addWidget(timingParams)
layoutCol3.addStretch()
layoutCol3.addWidget(automationParams)
layoutCol3.addStretch()
layoutCol3.addWidget(trialParams)
layoutCol3.addStretch()
layoutCol3.addWidget(reportParams)
layoutCol3.addStretch()
layoutCol4.addWidget(soundParams)
layoutCol4.addStretch()
layoutCol4.addWidget(threshParams)
layoutCol4.addStretch()
layoutCol4.addWidget(bandParams)
layoutCol4.addStretch()
layoutCol4.addWidget(noiseParams)
layoutCol4.addStretch()
self.centralWidget.setLayout(layoutMain)
self.setCentralWidget(self.centralWidget)
# -- Add variables for storing results --
maxNtrials = 4000 # Preallocating space for each vector makes things easier
self.results = arraycontainer.Container()
self.results.labels['rewardSide'] = {'left': 0, 'right': 1}
self.results['rewardSide'] = np.random.randint(2, size=maxNtrials)
self.results.labels['choice'] = {'left': 0, 'right': 1, 'none': 2}
self.results['choice'] = np.empty(maxNtrials, dtype=int)
self.results.labels['outcome'] = {
'correct': 1,
'error': 0,
'invalid': 2,
'free': 3,
'nochoice': 4,
'aftererror': 5,
'aborted': 6
}
self.results['outcome'] = np.empty(maxNtrials, dtype=int)
# Saving as bool creates an 'enum' vector, so I'm saving as 'int'
self.results['valid'] = np.zeros(maxNtrials,
dtype='int8') # redundant but useful
self.results['timeTrialStart'] = np.empty(maxNtrials, dtype=float)
self.results['timeTarget'] = np.empty(maxNtrials, dtype=float)
self.results['timeCenterIn'] = np.empty(maxNtrials, dtype=float)
self.results['timeCenterOut'] = np.empty(maxNtrials, dtype=float)
self.results['timeSideIn'] = np.empty(maxNtrials, dtype=float)
# -- Load parameters from a file --
self.params.from_file(paramfile, paramdictname)
# -- Connect to sound server and define sounds --
print 'Conecting to soundserver...'
print '***** FIXME: HARDCODED TIME DELAY TO WAIT FOR SERIAL PORT! *****' ### DEBUG
time.sleep(0.2)
self.soundClient = soundclient.SoundClient()
self.punishSoundID = 127
self.soundClient.start()