def getImageMetadata(self):
metadata = WebServiceArray()
if self.user and self.user.is_authenticated():
if self.unlimited:
allowedImages = (
Picture.objects.filter(isPrivate=False)
| Picture.objects.filter(user__exact=self.user,
isPrivate=True))[self.offset:]
else:
allowedImages = (Picture.objects.filter(isPrivate=False)
| Picture.objects.filter(
user__exact=self.user,
isPrivate=True))[self.offset:self.offset +
self.limit]
else:
if self.unlimited:
allowedImages = Picture.objects.filter(
isPrivate=False)[self.offset:]
else:
allowedImages = Picture.objects.filter(
isPrivate=False)[self.offset:self.offset + self.limit]
imageMetadataAPI = ImageMetadataAPI(self.user, self.fields)
for image in allowedImages:
metadata.put(
imageMetadataAPI.getImageMetadata(image, False).getObject())
return metadata
def doProcessRender(self, request):
self.setLayout('admin/imageEditor.html')
try:
imageKey = request.GET.get('imageId', None)
if (imageKey):
image = Picture.objects.get(pk__exact=imageKey)
# initialize tagging APIs
tagGroupAPI = TagGroupAPI(unlimited=True)
tagAPI = TagAPI(unlimited=True)
geneLinkAPI = GeneLinkAPI(unlimited=True)
tagGroups = tagGroupAPI.getTagGroupsByImage(image,
False).getObject()
for group in tagGroups:
tags = tagAPI.getTagsByTagGroup(group['id']).getObject()
#tags = tagAPI.getTagsByImage(group['imageId']).getObject()
#print('tags= ' + json.dumps(tags))
#print('group id= ' + json.dumps(group))
for tag in tags:
geneLinks = geneLinkAPI.getGeneLinksByTag(
tag['id']).getObject()
tag['geneLinks'] = geneLinks
#print('tag= ' + json.dumps(tag))
group['tags'] = tags
#print('tagGroups= ' + json.dumps(tagGroups))
# initialize image metadata API
imageMetadataAPI = ImageMetadataAPI(request.user)
imageMetadata = imageMetadataAPI.getImageMetadata(
image, isKey=False).getObject()
# add to recently viewed images - modified by ktcho, 2017.10.09
# moved from get.py to here (add only when user view image via image editor/viewer)
if (request.user):
RecentlyViewedPicture.objects.get_or_create(
user=request.user, picture=image)[0].save()
return {
'imageMetadata': json.dumps(imageMetadata),
'tagGroups': json.dumps(tagGroups),
'image': image
}
else:
self.setLayout('public/404Media.html')
return {}
except ObjectDoesNotExist:
self.setLayout('public/404Media.html')
return {}
except KeyError:
self.setLayout('public/404Media.html')
return {}
def getImageMetadataByOrganism(self, organismId):
metadata = WebServiceObject()
if self.user and self.user.is_authenticated():
allowedImages = Picture.objects.filter(isPrivate=False) | Picture.objects.filter(user__exact=self.user, isPrivate=True)
else:
allowedImages = Picture.objects.filter(isPrivate=False)
defTags = []
if self.unlimited:
for orgId in organismId:
defTags.append(PictureDefinitionTag.objects.filter(organism__exact=orgId, picture__in=allowedImages)[self.offset:])
else:
for orgId in organismId:
defTags.append(PictureDefinitionTag.objects.filter(organism__exact=orgId, picture__in=allowedImages)[self.offset:self.offset + self.limit])
closedSet = {}
imageMetadata = {}
imageFields = set(['id' , 'url', 'uploadDate', 'description', 'uploadedBy'])
if self.fields:
newImageFields = imageFields.intersection(set(self.fields))
if newImageFields:
imageFields = newImageFields
imageMetadataAPI = ImageMetadataAPI(self.user, imageFields)
for orgTags in defTags:
for tag in orgTags:
if not closedSet.has_key(tag.picture.pk):
closedSet[tag.picture.pk] = imageMetadataAPI.getImageMetadata(tag.picture, False).getObject()
if imageMetadata.has_key(tag.organism.pk):
imageMetadata[tag.organism.pk]['images'].append(closedSet[tag.picture.pk])
else:
imageMetadata[tag.organism.pk] = {
'images' : [closedSet[tag.picture.pk]],
'organism' : {
'id' : tag.organism.pk,
'commonName' : tag.organism.common_name,
'abbreviation' : tag.organism.abbreviation,
'genus' : tag.organism.genus,
'species' : tag.organism.species
}
}
if len(imageMetadata) != len(organismId):
for orgId in organismId:
if not imageMetadata.has_key(orgId):
imageMetadata[orgId] = []
metadata.setObject(LimitDict(self.fields, imageMetadata))
return metadata
def doProcessRender(self, request):
self.setLayout('admin/imageEditor.html')
try:
imageKey = request.GET.get('imageId', None)
if (imageKey):
image = Picture.objects.get(pk__exact=imageKey)
# initialize tagging APIs
tagGroupAPI = TagGroupAPI(unlimited=True)
tagAPI = TagAPI(unlimited=True)
geneLinkAPI = GeneLinkAPI(unlimited=True)
tagGroups = tagGroupAPI.getTagGroupsByImage(image,
False).getObject()
for group in tagGroups:
tags = tagAPI.getTagsByTagGroup(group['id']).getObject()
for tag in tags:
geneLinks = geneLinkAPI.getGeneLinksByTag(
tag['id']).getObject()
tag['geneLinks'] = geneLinks
group['tags'] = tags
# initialize image metadata API
imageMetadataAPI = ImageMetadataAPI(request.user)
imageMetadata = imageMetadataAPI.getImageMetadata(
image, isKey=False).getObject()
return {
'imageMetadata': json.dumps(imageMetadata),
'tagGroups': json.dumps(tagGroups),
'image': image
}
else:
self.setLayout('public/404Media.html')
return {}
except ObjectDoesNotExist:
self.setLayout('public/404Media.html')
return {}
except KeyError:
self.setLayout('public/404Media.html')
return {}
def getImageMetadata(self):
metadata = WebServiceArray()
if self.user and self.user.is_authenticated():
if self.unlimited:
allowedImages = (Picture.objects.filter(isPrivate=False) | Picture.objects.filter(user__exact=self.user, isPrivate=True))[self.offset:]
else:
allowedImages = (Picture.objects.filter(isPrivate=False) | Picture.objects.filter(user__exact=self.user, isPrivate=True))[self.offset:self.offset+self.limit]
else:
if self.unlimited:
allowedImages = Picture.objects.filter(isPrivate=False)[self.offset:]
else:
allowedImages = Picture.objects.filter(isPrivate=False)[self.offset:self.offset+self.limit]
imageMetadataAPI = ImageMetadataAPI(self.user, self.fields)
for image in allowedImages:
metadata.put(imageMetadataAPI.getImageMetadata(image, False).getObject())
return metadata
def doProcessRender(self, request):
self.setLayout('admin/imageEditor.html')
try:
imageKey = request.GET.get('imageId', None)
if (imageKey):
image = Picture.objects.get(pk__exact=imageKey)
# initialize tagging APIs
tagGroupAPI = TagGroupAPI(unlimited=True)
tagAPI = TagAPI(unlimited=True)
geneLinkAPI = GeneLinkAPI(unlimited=True)
tagGroups = tagGroupAPI.getTagGroupsByImage(image, False).getObject()
for group in tagGroups:
tags = tagAPI.getTagsByTagGroup(group['id']).getObject()
for tag in tags:
geneLinks = geneLinkAPI.getGeneLinksByTag(tag['id']).getObject()
tag['geneLinks'] = geneLinks
group['tags'] = tags
# initialize image metadata API
imageMetadataAPI = ImageMetadataAPI(request.user)
imageMetadata = imageMetadataAPI.getImageMetadata(image, isKey=False).getObject()
return {
'imageMetadata' : json.dumps(imageMetadata),
'tagGroups' : json.dumps(tagGroups),
'image' : image
}
else:
self.setLayout('public/404Media.html')
return {}
except ObjectDoesNotExist:
self.setLayout('public/404Media.html')
return {}
except KeyError:
self.setLayout('public/404Media.html')
return {}
def getImageMetadataByOrganism(self, organismId):
metadata = WebServiceObject()
if self.user and self.user.is_authenticated():
allowedImages = Picture.objects.filter(
isPrivate=False) | Picture.objects.filter(
user__exact=self.user, isPrivate=True)
else:
allowedImages = Picture.objects.filter(isPrivate=False)
defTags = []
if self.unlimited:
for orgId in organismId:
defTags.append(
PictureDefinitionTag.objects.filter(
organism__exact=orgId,
picture__in=allowedImages)[self.offset:])
else:
for orgId in organismId:
defTags.append(
PictureDefinitionTag.objects.filter(
organism__exact=orgId,
picture__in=allowedImages)[self.offset:self.offset +
self.limit])
closedSet = {}
imageMetadata = {}
imageFields = set(
['id', 'url', 'uploadDate', 'description', 'uploadedBy'])
if self.fields:
newImageFields = imageFields.intersection(set(self.fields))
if newImageFields:
imageFields = newImageFields
imageMetadataAPI = ImageMetadataAPI(self.user, imageFields)
for orgTags in defTags:
for tag in orgTags:
if not closedSet.has_key(tag.picture.pk):
closedSet[
tag.picture.pk] = imageMetadataAPI.getImageMetadata(
tag.picture, False).getObject()
if imageMetadata.has_key(tag.organism.pk):
imageMetadata[tag.organism.pk]['images'].append(
closedSet[tag.picture.pk])
else:
imageMetadata[tag.organism.pk] = {
'images': [closedSet[tag.picture.pk]],
'organism': {
'id': tag.organism.pk,
'commonName': tag.organism.common_name,
'abbreviation': tag.organism.abbreviation,
'genus': tag.organism.genus,
'species': tag.organism.species
}
}
if len(imageMetadata) != len(organismId):
for orgId in organismId:
if not imageMetadata.has_key(orgId):
imageMetadata[orgId] = []
metadata.setObject(LimitDict(self.fields, imageMetadata))
return metadata
def getImageMetadataForiSearch(self, query):
metadata = WebServiceArray()
imageMetadata = {}
# Image description
iDescImages = Picture.objects.filter(
description__icontains=query[0])[self.offset:self.offset +
self.limit]
# Image notes
iNoteImages = []
picturesIN = []
iNotes = PictureNotes.objects.filter(notes__icontains=query[0])
for note in iNotes:
pictureID = note.picture.pk
if pictureID not in picturesIN:
iNoteImages.extend(Picture.objects.filter(id__exact=pictureID))
picturesIN.append(pictureID)
iNoteImages = iNoteImages[self.offset:self.offset + self.limit]
# Gene name
gNameImages = []
picturesGN = []
pMgdbs = PictureMgdb.objects.filter(
locus_full_name__icontains=query[0])
for pMgdb in pMgdbs:
pictureID = pMgdb.picture.pk
if pictureID not in picturesGN:
gNameImages.extend(Picture.objects.filter(id__exact=pictureID))
picturesGN.append(pictureID)
gNameImages = gNameImages[self.offset:self.offset + self.limit]
# Gene Symbol
gSymbolImages = []
picturesGS = []
pMgdbs = PictureMgdb.objects.filter(locus_name__icontains=query[0])
for pMgdb in pMgdbs:
pictureID = pMgdb.picture.pk
if pictureID not in picturesGS:
gSymbolImages.extend(
Picture.objects.filter(id__exact=pictureID))
picturesGS.append(pictureID)
gSymbolImages = gSymbolImages[self.offset:self.offset + self.limit]
# Gene ID
gIDImages = []
pictureGIs = []
pIDs = PictureGeneID.objects.filter(gene_id__icontains=query[0])
for pID in pIDs:
pictureID = pID.picture.pk
if pictureID not in pictureGIs:
gIDImages.extend(Picture.objects.filter(id__exact=pictureID))
pictureGIs.append(pictureID)
gIDImages = gIDImages[self.offset:self.offset + self.limit]
imageMetadataAPI = ImageMetadataAPI(self.user, self.fields)
for image in iDescImages:
if imageMetadata.has_key(0):
imageMetadata[0]['images'].append(
imageMetadataAPI.getImageMetadata(image,
False).getObject())
else:
imageMetadata[0] = {
'images': [
imageMetadataAPI.getImageMetadata(image,
False).getObject()
]
}
for image in iNoteImages:
if imageMetadata.has_key(1):
imageMetadata[1]['images'].append(
imageMetadataAPI.getImageMetadata(image,
False).getObject())
else:
imageMetadata[1] = {
'images': [
imageMetadataAPI.getImageMetadata(image,
False).getObject()
]
}
for image in gNameImages:
if imageMetadata.has_key(2):
imageMetadata[2]['images'].append(
imageMetadataAPI.getImageMetadata(image,
False).getObject())
else:
imageMetadata[2] = {
'images': [
imageMetadataAPI.getImageMetadata(image,
False).getObject()
]
}
for image in gSymbolImages:
if imageMetadata.has_key(3):
imageMetadata[3]['images'].append(
imageMetadataAPI.getImageMetadata(image,
False).getObject())
else:
imageMetadata[3] = {
'images': [
imageMetadataAPI.getImageMetadata(image,
False).getObject()
]
}
for image in gIDImages:
if imageMetadata.has_key(4):
imageMetadata[4]['images'].append(
imageMetadataAPI.getImageMetadata(image,
False).getObject())
else:
imageMetadata[4] = {
'images': [
imageMetadataAPI.getImageMetadata(image,
False).getObject()
]
}
metadata.setObject(LimitDict(self.fields, imageMetadata))
return metadata
