def __init__(self, logger=None): """Initialize Ultimac Mux R/P PCB mux object with default parameters""" if logger is not None: # if defined, place logger into Mux self.logging = logger self.session = Tel_net() mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) mux_state_00 = ([0, 0, 0, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0, 0, 0, 0, 0, 0, 1, 0]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0, 0, 0, 0, 0, 0, 0, 1]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0, 0, 0, 0, 0, 0, 1, 1]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info("---\t-\t--> Mux object constructed")
def __init__(self, logger=None): """ Initialize Ultimac Mux R/P PCB mux object with default parameters """ self.session = Tel_net() log.debug("---\t-\t--> MUX: Initialize mux") mux_state = ([0,0,0,0,0,1,0,0]) mux_state_00 = ([0,0,0,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0,0,0,0,0,0,1,0]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0,0,0,0,0,0,0,1]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0,0,0,0,0,0,1,1]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') log.debug("---\t-\t--> MUX: mux object constructed")
class Mux: global mux_state global mux_state_00 global session mux_state_00 = ([0,0,0,0,0]) def __init__(self, logger=None): """ Initialize Ultimac Mux R/P PCB mux object with default parameters """ self.session = Tel_net() log.debug("---\t-\t--> MUX: Initialize mux") mux_state = ([0,0,0,0,0,1,0,0]) mux_state_00 = ([0,0,0,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0,0,0,0,0,0,1,0]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0,0,0,0,0,0,0,1]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0,0,0,0,0,0,1,1]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') log.debug("---\t-\t--> MUX: mux object constructed") # Added by Greg Porreca 01-23-2009 to easily select an arbitrary device def setToDevice(self, device_name): log.debug("---\t-\t--> switch to device %s" %(device_name)) if(device_name == 'V1'): self.set_to_rotary_valve1() if(device_name == 'V2'): self.set_to_rotary_valve2() if(device_name == 'V3'): self.set_to_rotary_valve3() if(device_name == 'V4'): self.set_to_rotary_valve4() if(device_name == 'SP'): self.set_to_syringe_pump() if(device_name == 'TCFC0'): # flowcell 0 temperature controller self.set_to_temperature_control1() if(device_name == 'TCFC1'): # flowcell 1 temperature controller self.set_to_temperature_control2() if(device_name == 'TCRB'): # reagent block temperature controller self.set_to_reagent_block_cooler() #------------------------------------------------------------------------------# # Ultimac Mux R/P PCB FUNCTIONS # #------------------------------------------------------------------------------# # Discrete valves def discrete_valve4_open(self): "Sets valve V4 to ON state" log.debug("---\t-\t--> MUX: switch 3-way discrete valve V4 to NO (ligase)") mux_state_00[0] = 1 mux_state = ([0,0,0,0,0,1,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def discrete_valve4_close(self): "Sets valve V4 to OFF state" log.debug("---\t-\t--> MUX: switch 3-way discrete valve V4 to NC " + \ "(ligase buffer)") mux_state_00[0] = 0 mux_state = ([0,0,0,0,0,1,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def discrete_valve5_open(self): "Sets valve V5 to ON state" log.debug("---\t-\t--> MUX: switch 3-way discrete valve V5 to NO " + \ "(from V3 to FC)") mux_state_00[1] = 1 mux_state = ([0,0,0,0,0,1,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def discrete_valve5_close(self): "Sets valve V5 to OFF state" log.debug("---\t-\t--> MUX: switch 3-way discrete valve V5 to NC " + \ "(from mixer to FC)") mux_state_00[1] = 0 mux_state = ([0,0,0,0,0,1,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def discrete_valve6_open(self): "Sets valve V6 to ON state" log.debug("---\t-\t--> MUX: switch 3-way discrete valve V6 to NO " + \ "(through FC 2)") mux_state_00[2] = 1 mux_state = ([0,0,0,0,0,1,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def discrete_valve6_close(self): "Sets valve V6 to OFF state" log.debug("---\t-\t--> MUX: switch 3-way discrete valve V6 to NC "+ \ "(through FC 1)") mux_state_00[2] = 0 mux_state = ([0,0,0,0,0,1,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def discrete_valve7_open(self): "Sets valve V7 to ON state" log.debug("---\t-\t--> MUX: switch 3-way discrete valve V7 to NO (dH2O)") mux_state_00[3] = 1 mux_state = ([0,0,0,0,0,1,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def discrete_valve7_close(self): "Sets valve V7 to OFF state" log.debug("---\t-\t--> MUX: switch 3-way discrete valve V7 to NC (air)") mux_state_00[3] = 0 mux_state = ([0,0,0,0,0,1,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') # Reagent mixer def mixer_ON(self): "Mixing in mixer: ON" log.debug("---\t-\t--> MUX: mixing chamber on") mux_state_00[4] = 1 mux_state = ([0,0,0,0,0,1,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def mixer_OFF(self): "Mixing in mixer: OFF" log.debug("---\t-\t--> MUX: mixing chamber off") mux_state_00[4] = 0 mux_state = ([0,0,0,0,0,1,0,0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') # Flowcell heater/cooler def set_to_temperature_control1(self): "Communication channel set to temperature controller 1" log.debug("---\t-\t--> MUX: switch communication to temperature " + \ "controller 1") mux_state = ([0,0,0,0,0,1,0,1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def set_to_temperature_control2(self): "Communication channel set to temperature controller 2" log.debug("---\t-\t--> MUX: switch communication to temperature " + \ "controller 2") mux_state = ([1,0,0,0,0,1,0,1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def set_to_reagent_block_cooler(self): "Communication channel set to reagent block cooler" log.debug("---\t-\t--> MUX: switch communication to reagent block " + \ "cooler") mux_state = ([0,1,0,0,0,1,0,1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') # Rotary valves def set_to_rotary_valve1(self): "Communication channel set to rotary valve 1" log.debug("---\t-\t--> MUX: switch communication to ten port rotary " + \ "valve V1") mux_state = ([0,0,1,0,0,1,0,1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def set_to_rotary_valve2(self): "Communication channel set to rotary valve 2" log.debug("---\t-\t--> MUX: switch communication to ten port rotary" + \ " valve V2") mux_state = ([1,0,1,0,0,1,0,1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def set_to_rotary_valve3(self): "Communication channel set to rotary valve 3" log.debug("---\t-\t--> MUX: switch communication to ten port rotary" + \ " valve V3") mux_state = ([0,1,1,0,0,1,0,1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def set_to_rotary_valve4(self): "Communication channel set to rotary valve 4" log.debug("---\t-\t--> MUX: switch communication to ten port rotary" + \ " valve V4") mux_state = ([1,1,1,0,0,1,0,1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') # Syringe pump def set_to_syringe_pump(self): "Communication channel set to syringe pump" log.debug("---\t-\t--> MUX: switch communication to syringe pump") mux_state = ([1,1,0,0,0,1,0,1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') def __del__(self): mux_state = ([0,0,0,0,0,0]) self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[6]=' + str(1), '>') self.session.parse_read_string('m_dout[7]=' + str(1), '>') self.session.parse_read_string('m_dout[6]=' + str(0), '>') self.session.parse_read_string('m_dout[7]=' + str(0), '>') self.session.parse_read_string('m_dout[6]=' + str(1), '>') self.session.parse_read_string('m_dout[7]=' + str(0), '>') self.session.parse_read_string('m_dout[6]=' + str(0), '>') return
class Mux: global mux_state global mux_state_00 global session mux_state_00 = ([0, 0, 0, 0, 0]) def __init__(self, logger=None): """Initialize Ultimac Mux R/P PCB mux object with default parameters""" if logger is not None: # if defined, place logger into Mux self.logging = logger self.session = Tel_net() mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) mux_state_00 = ([0, 0, 0, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0, 0, 0, 0, 0, 0, 1, 0]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0, 0, 0, 0, 0, 0, 0, 1]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state = ([0, 0, 0, 0, 0, 0, 1, 1]) self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info("---\t-\t--> Mux object constructed") #--------------------------------------------------------------------------------------# # Ultimac Mux R/P PCB FUNCTIONS # #--------------------------------------------------------------------------------------# # Discrete valves def discrete_valve4_open(self): "Sets valve V4 to ON state" mux_state_00[0] = 1 mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch 3-way discrete valve V4 to NO (ligase)") def discrete_valve4_close(self): "Sets valve V4 to OFF state" mux_state_00[0] = 0 mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch 3-way discrete valve V4 to NC (ligase buffer)") def discrete_valve5_open(self): "Sets valve V5 to ON state" mux_state_00[1] = 1 mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch 3-way discrete valve V5 to NO (from V3 to FC)") def discrete_valve5_close(self): "Sets valve V5 to OFF state" mux_state_00[1] = 0 mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch 3-way discrete valve V5 to NC (from mixer to FC)" ) def discrete_valve6_open(self): "Sets valve V6 to ON state" mux_state_00[2] = 1 mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch 3-way discrete valve V6 to NO (through FC 2)") def discrete_valve6_close(self): "Sets valve V6 to OFF state" mux_state_00[2] = 0 mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch 3-way discrete valve V6 to NC (through FC 1)") def discrete_valve7_open(self): "Sets valve V7 to ON state" mux_state_00[3] = 1 mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch 3-way discrete valve V7 to NO (dH2O)") def discrete_valve7_close(self): "Sets valve V7 to OFF state" mux_state_00[3] = 0 mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch 3-way discrete valve V7 to NC (air)") # Reagent mixer def mixer_ON(self): "Mixing in mixer: ON" mux_state_00[4] = 1 mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info("---\t-\t--> Mixing chamber in use") def mixer_OFF(self): "Mixing in mixer: OFF" mux_state_00[4] = 0 mux_state = ([0, 0, 0, 0, 0, 1, 0, 0]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info("---\t-\t--> Mixing chamber is off") # Flowcell heater/cooler def set_to_temperature_control1(self): "Communication channel set to temperature controller 1" mux_state = ([0, 0, 0, 0, 0, 1, 0, 1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch communication to temperature controller 1") def set_to_temperature_control2(self): "Communication channel set to temperature controller 2" mux_state = ([1, 0, 0, 0, 0, 1, 0, 1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch communication to temperature controller 2") def set_to_reagent_block_cooler(self): "Communication channel set to reagent block cooler" mux_state = ([0, 1, 0, 0, 0, 1, 0, 1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch communication to reagent block cooler") # Rotary valves def set_to_rotary_valve1(self): "Communication channel set to rotary valve 1" mux_state = ([0, 0, 1, 0, 0, 1, 0, 1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch communication to ten port rotary valve V1") def set_to_rotary_valve2(self): "Communication channel set to rotary valve 2" mux_state = ([1, 0, 1, 0, 0, 1, 0, 1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch communication to ten port rotary valve V2") def set_to_rotary_valve3(self): "Communication channel set to rotary valve 3" mux_state = ([0, 1, 1, 0, 0, 1, 0, 1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch communication to ten port rotary valve V3") def set_to_rotary_valve4(self): "Communication channel set to rotary valve 3" mux_state = ([1, 1, 1, 0, 0, 1, 0, 1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info( "---\t-\t--> Switch communication to ten port rotary valve V3") # Syringe pump def set_to_syringe_pump(self): "Communication channel set to syringe pump" mux_state = ([1, 1, 0, 0, 0, 1, 0, 1]) self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>') self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>') mux_state[5] = 0 self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') mux_state[5] = 1 #self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.logging.info("---\t-\t--> Switch communication to syringe pump") def __del__(self): mux_state = ([0, 0, 0, 0, 0, 0]) self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>') self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>') self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>') self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>') self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>') self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>') self.session.parse_read_string('m_dout[6]=' + str(1), '>') self.session.parse_read_string('m_dout[7]=' + str(1), '>') self.session.parse_read_string('m_dout[6]=' + str(0), '>') self.session.parse_read_string('m_dout[7]=' + str(0), '>') self.session.parse_read_string('m_dout[6]=' + str(1), '>') self.session.parse_read_string('m_dout[7]=' + str(0), '>') self.session.parse_read_string('m_dout[6]=' + str(0), '>') return
print 'ping', commands.getstatusoutput('ping -c 1 10.0.0.56') sys.stdout.flush() error = 0 packet_loss = 0 while (error != (-1) and packet_loss != (-1)): ping_reply = commands.getstatusoutput('ping -c 1 10.0.0.56') find_string = ping_reply find_string = str(find_string) error = find_string.find('error') packet_loss = find_string.find('100% packet loss') time.sleep(10) time.sleep(1) session = Tel_net() x_hmstat = 1 y_hmstat = 1 #while (x_hmstat != 0 and y_hmstat != 0): # x_hmstat = session.parse_read_string('x.hmstat', '>') # x_hmstat = x_hmstat.strip('>') # x_hmstat = x_hmstat.strip() # x_hmstat = int(x_hmstat) # y_hmstat = session.parse_read_string('y.hmstat', '>') # y_hmstat = y_hmstat.strip('>') # y_hmstat = y_hmstat.strip() # y_hmstat = int(y_hmstat) # time.sleep(0.1) config = ConfigParser.ConfigParser()
print 'INFO\t ***\t*\t--> Please, slide your hand across touch sensor to activate POLONATOR\n' print 'ping', commands.getstatusoutput('ping -c 1 10.0.0.56') error = 0 packet_loss = 0 while (error != (-1) and packet_loss != (-1)): ping_reply = commands.getstatusoutput('ping -c 1 10.0.0.56') find_string = ping_reply find_string = str(find_string) error = find_string.find('error') packet_loss = find_string.find('100% packet loss') time.sleep(10) time.sleep(1) session = Tel_net() x_hmstat = 1 y_hmstat = 1 while (x_hmstat != 0 and y_hmstat != 0): x_hmstat = session.parse_read_string('x.hmstat', '>') x_hmstat = x_hmstat.strip('>') x_hmstat = x_hmstat.strip() x_hmstat = int(x_hmstat) y_hmstat = session.parse_read_string('y.hmstat', '>') y_hmstat = y_hmstat.strip('>') y_hmstat = y_hmstat.strip() y_hmstat = int(y_hmstat) time.sleep(0.1) config = ConfigParser.ConfigParser()