def test_mkdir_rmdir(self):
remote_folder, remote_name = self._get_remote_folder()
self._call_shell_command("mkdir", remote_folder)
output = self._call_shell_command("ls",
helpers.get_remote_test_folder())
self.assertTrue(remote_name in output,
"Expected folder not found. Received: %s" % (output, ))
# The recurse is needed to compensate for a bug in GenomeSpace swift
# which creates a .hidden file in each folder
self._call_shell_command("rm", "-R", remote_folder)
output = self._call_shell_command("ls",
helpers.get_remote_test_folder())
self.assertTrue(
remote_name not in output,
"Expected folder to be deleted. Received: %s" % (output, ))
def test_mkdir_rmdir(self):
client = helpers.get_genomespace_client()
remote_folder1, remote_name1 = self._get_remote_folder()
client.mkdir(remote_folder1)
filelist = client.list(helpers.get_remote_test_folder())
found_file = [f for f in filelist.contents
if self._adjust_gs_swift_bug(f.name) == remote_name1 and
f.is_directory]
self.assertTrue(len(found_file) == 1,
"Expected to find one created folder")
# The recurse is needed to compensate for a bug in GenomeSpace swift
# which creates a .hidden file in each folder
client.delete(remote_folder1, recurse=True)
filelist = client.list(helpers.get_remote_test_folder())
found_file = [f for f in filelist.contents
if self._adjust_gs_swift_bug(f.name) == remote_name1]
self.assertTrue(len(found_file) == 0,
"Expected folder to be deleted but it's not")
def test_list(self):
local_test_file = self._get_test_file()
remote_file_path, remote_name = self._get_remote_file()
self._call_shell_command("cp", local_test_file, remote_file_path)
output = self._call_shell_command(
"ls", helpers.get_remote_test_folder())
self.assertTrue(remote_name in output,
"Expected file not found. Received: %s" % (output,))
self._call_shell_command("rm", remote_file_path)
def test_list(self):
client = helpers.get_genomespace_client()
local_test_file = self._get_test_file()
remote_file_path, remote_name = self._get_remote_file()
client.copy(local_test_file, remote_file_path)
filelist = client.list(helpers.get_remote_test_folder())
found_file = [f for f in filelist["contents"]
if f["name"] == remote_name]
self.assertTrue(len(found_file) == 1, "Expected file not found")
client.delete(remote_file_path)
def test_list(self):
client = helpers.get_genomespace_client()
local_test_file = self._get_test_file()
remote_file_path, remote_name = self._get_remote_file()
client.copy(local_test_file, remote_file_path)
filelist = client.list(helpers.get_remote_test_folder())
found_file = [f for f in filelist.contents
if f.name == remote_name]
self.assertTrue(len(found_file) == 1, "Expected file not found")
client.delete(remote_file_path)
def test_list(self):
local_test_file = self._get_test_file()
remote_file_path, remote_name = self._get_remote_file()
self._call_shell_command("cp", local_test_file, remote_file_path)
output = self._call_shell_command("ls",
helpers.get_remote_test_folder())
self.assertTrue(remote_name in output,
"Expected file not found. Received: %s" % (output, ))
self._call_shell_command("rm", remote_file_path)
def test_delete(self):
local_test_file = self._get_test_file()
remote_file_path, remote_name = self._get_remote_file()
self._call_shell_command("cp", local_test_file, remote_file_path)
self._call_shell_command("rm", remote_file_path)
output = self._call_shell_command("ls",
helpers.get_remote_test_folder())
self.assertFalse(remote_name in output,
"File was found but should have been deleted")
def test_delete(self):
local_test_file = self._get_test_file()
remote_file_path, remote_name = self._get_remote_file()
self._call_shell_command("cp", local_test_file, remote_file_path)
self._call_shell_command("rm", remote_file_path)
output = self._call_shell_command(
"ls", helpers.get_remote_test_folder())
self.assertFalse(remote_name in output,
"File was found but should have been deleted")
def test_delete(self):
client = helpers.get_genomespace_client()
local_test_file = self._get_test_file()
remote_file_path, remote_name = self._get_remote_file()
client.copy(local_test_file, remote_file_path)
client.delete(remote_file_path)
filelist = client.list(helpers.get_remote_test_folder())
found_file = [f for f in filelist.contents
if f.name == remote_name]
self.assertTrue(len(found_file) == 0,
"File was found but should have been deleted")
def test_delete(self):
client = helpers.get_genomespace_client()
local_test_file = self._get_test_file()
remote_file_path, remote_name = self._get_remote_file()
client.copy(local_test_file, remote_file_path)
client.delete(remote_file_path)
filelist = client.list(helpers.get_remote_test_folder())
found_file = [f for f in filelist["contents"]
if f["name"] == remote_name]
self.assertTrue(len(found_file) == 0,
"File was found but should have been deleted")
def test_delete_folder(self):
local_test_folder = self._get_test_folder()
remote_folder, remote_name = self._get_remote_folder()
self._call_shell_command("mkdir", remote_folder)
self._call_shell_command("cp", "-R", local_test_folder, remote_folder)
self._call_shell_command("rm", "-R", remote_folder)
output = self._call_shell_command("ls",
helpers.get_remote_test_folder())
self.assertTrue(
remote_name not in output,
"Expected folder to be deleted. Received: %s" % (output, ))
def test_get_token_expiry(self):
client = helpers.get_genomespace_client()
genomespace_url = helpers.get_genomespace_url()
# no gs-token, as have not yet performed any actions
milliseconds_left = client.get_remaining_token_time(genomespace_url)
self.assertTrue(
milliseconds_left == 0,
"Expected client not yet logged in to have no token expiry time")
# now force a login and hence the client to get a gs-token
client.list(helpers.get_remote_test_folder())
milliseconds_left = client.get_remaining_token_time(genomespace_url)
self.assertTrue(
milliseconds_left > 0,
"Expected a logged in client to have a token expiry time")
def test_delete_folder(self):
client = helpers.get_genomespace_client()
local_test_folder = self._get_test_folder()
remote_folder, remote_name = self._get_remote_folder()
client.mkdir(remote_folder)
client.copy(local_test_folder, remote_folder, recurse=True)
client.delete(remote_folder, recurse=True)
filelist = client.list(helpers.get_remote_test_folder())
found_folder = [f for f in filelist.contents
if self._adjust_gs_swift_bug(f.name) == remote_name]
self.assertTrue(len(found_folder) == 0,
"Folder was found but should have been deleted")
def test_move(self):
local_test_file = self._get_test_file()
local_temp_file = self._get_temp_file()
remote_file1, _ = self._get_remote_file()
remote_file2, _ = self._get_remote_file()
self._call_shell_command("cp", local_test_file, remote_file1)
self._call_shell_command("mv", remote_file1, remote_file2)
self._call_shell_command("cp", remote_file2, local_temp_file)
self._call_shell_command("rm", remote_file2)
output = self._call_shell_command("ls",
helpers.get_remote_test_folder())
self.assertFalse(remote_file1 in output,
"File was found but should have been moved")
self.assertTrue(filecmp.cmp(local_test_file, local_temp_file))
os.remove(local_temp_file)
def test_move(self):
local_test_file = self._get_test_file()
local_temp_file = self._get_temp_file()
remote_file1, _ = self._get_remote_file()
remote_file2, _ = self._get_remote_file()
self._call_shell_command("cp", local_test_file, remote_file1)
self._call_shell_command("mv", remote_file1, remote_file2)
self._call_shell_command("cp", remote_file2, local_temp_file)
self._call_shell_command("rm", remote_file2)
output = self._call_shell_command(
"ls", helpers.get_remote_test_folder())
self.assertFalse(remote_file1 in output,
"File was found but should have been deleted")
self.assertTrue(filecmp.cmp(local_test_file, local_temp_file))
os.remove(local_temp_file)
def test_move(self):
client = helpers.get_genomespace_client()
local_test_file = self._get_test_file()
local_temp_file = self._get_temp_file()
remote_file1, _ = self._get_remote_file()
remote_file2, _ = self._get_remote_file()
client.copy(local_test_file, remote_file1)
client.move(remote_file1, remote_file2)
client.copy(remote_file2, local_temp_file)
client.delete(remote_file2)
filelist = client.list(helpers.get_remote_test_folder())
found_file = [f for f in filelist["contents"]
if f["name"] == remote_file1]
self.assertTrue(len(found_file) == 0,
"File was found but should have been deleted")
self.assertTrue(filecmp.cmp(local_test_file, local_temp_file))
os.remove(local_temp_file)
def test_move(self):
client = helpers.get_genomespace_client()
local_test_file = self._get_test_file()
local_temp_file = self._get_temp_file()
remote_file1, remote_name1 = self._get_remote_file()
remote_file2, _ = self._get_remote_file()
client.copy(local_test_file, remote_file1)
client.move(remote_file1, remote_file2)
client.copy(remote_file2, local_temp_file)
client.delete(remote_file2)
filelist = client.list(helpers.get_remote_test_folder())
found_file = [f for f in filelist.contents
if f.name == remote_name1]
self.assertTrue(len(found_file) == 0,
"File was found but should have been moved")
self.assertTrue(filecmp.cmp(local_test_file, local_temp_file))
os.remove(local_temp_file)
def _get_remote_file(self):
filename = self._get_temp_filename() + ".txt"
return (urljoin(helpers.get_remote_test_folder(), filename),
filename)
def _get_remote_file(self):
filename = self._get_temp_filename()
return (urljoin(helpers.get_remote_test_folder(), filename),
filename)
def _get_remote_folder(self):
foldername = self._get_temp_filename()
return (urljoin(helpers.get_remote_test_folder(), foldername) + "/",
foldername)