def makeSingleSeqSCFGXMLFile(scfgTemplate, scfgName, baseName, name): treeString = '(' + name + ');' taxonList = [name] testModelHierarchy.createXMLfile(scfgTemplate, scfgName, taxonList, treeString)
def makeSCFGXMLFile(scfgTemplate, colFileName, scfgName, baseName): taxonList, treeString = testModelHierarchy.getTaxonListAndTreeString(baseName, colFileName) testModelHierarchy.createXMLfile(scfgTemplate, scfgName, taxonList, treeString)