def runComparisonTests(autoEncoder, actFun, missingValuesHandling,
setAllFactor, train, test, x):
params = set_params(actFun, missingValuesHandling, setAllFactor,
autoEncoder) # set deeplearning model parameters
if autoEncoder:
try:
deeplearningModel = build_save_model(
params, x, train) # build and save mojo model
except Exception as err:
if not ("Trying to predict with an unstable model" in err.args[0]):
raise Exception(
'Deeplearning autoencoder model failed to build. Fix it.')
return
else:
deeplearningModel = build_save_model(
params, x, train) # build and save mojo model
h2o.download_csv(test[x], os.path.join(
TMPDIR, 'in.csv')) # save test file, h2o predict/mojo use same file
pred_h2o, pred_mojo = pyunit_utils.mojo_predict(
deeplearningModel, TMPDIR, MOJONAME) # load model and perform predict
pred_pojo = pyunit_utils.pojo_predict(deeplearningModel, TMPDIR, MOJONAME)
h2o.save_model(deeplearningModel, path=TMPDIR,
force=True) # save model for debugging
print("Comparing mojo predict and h2o predict...")
pyunit_utils.compare_frames_local_onecolumn_NA(pred_h2o,
pred_mojo,
prob=1,
tol=1e-10)
print("Comparing pojo predict and h2o predict...")
pyunit_utils.compare_frames_local_onecolumn_NA(pred_mojo,
pred_pojo,
prob=1,
tol=1e-10)
def glm_fractional_binomial_mojo_pojo():
params = set_params()
train = h2o.import_file(
pyunit_utils.locate("smalldata/glm_test/fraction_binommialOrig.csv"))
test = h2o.import_file(
pyunit_utils.locate("smalldata/glm_test/fraction_binommialOrig.csv"))
x = ["log10conc"]
y = "y"
glmModel = pyunit_utils.build_save_model_GLM(
params, x, train, y) # build and save mojo model
MOJONAME = pyunit_utils.getMojoName(glmModel._id)
TMPDIR = os.path.normpath(
os.path.join(os.path.dirname(os.path.realpath('__file__')), "..",
"results", MOJONAME))
h2o.download_csv(test[x], os.path.join(
TMPDIR, 'in.csv')) # save test file, h2o predict/mojo use same file
pred_h2o, pred_mojo = pyunit_utils.mojo_predict(
glmModel, TMPDIR, MOJONAME) # load model and perform predict
h2o.download_csv(pred_h2o, os.path.join(TMPDIR, "h2oPred.csv"))
pred_pojo = pyunit_utils.pojo_predict(glmModel, TMPDIR, MOJONAME)
pred_h2o = pred_h2o.drop(3)
print("Comparing mojo predict and h2o predict...")
pyunit_utils.compare_frames_local(
pred_h2o, pred_mojo, 0.1, tol=1e-10
) # make sure operation sequence is preserved from Tomk h2o.save_model(glmOrdinalModel, path=TMPDIR, force=True) # save model for debugging
print("Comparing pojo predict and h2o predict...")
pyunit_utils.compare_frames_local(pred_mojo, pred_pojo, 0.1, tol=1e-10)
def glm_binomial_mojo_pojo():
h2o.remove_all()
NTESTROWS = 200 # number of test dataset rows
PROBLEM = "binomial"
params = set_params() # set deeplearning model parameters
df = pyunit_utils.random_dataset(PROBLEM) # generate random dataset
train = df[NTESTROWS:, :]
test = df[:NTESTROWS, :]
x = list(set(df.names) - {"response"})
TMPDIR = tempfile.mkdtemp()
glmBinomialModel = pyunit_utils.build_save_model_generic(
params, x, train, "response", "glm",
TMPDIR) # build and save mojo model
MOJONAME = pyunit_utils.getMojoName(glmBinomialModel._id)
h2o.download_csv(test[x], os.path.join(
TMPDIR, 'in.csv')) # save test file, h2o predict/mojo use same file
pred_h2o, pred_mojo = pyunit_utils.mojo_predict(
glmBinomialModel, TMPDIR, MOJONAME) # load model and perform predict
h2o.download_csv(pred_h2o, os.path.join(TMPDIR, "h2oPred.csv"))
pred_pojo = pyunit_utils.pojo_predict(glmBinomialModel, TMPDIR, MOJONAME)
print("Comparing mojo predict and h2o predict...")
pyunit_utils.compare_frames_local(
pred_h2o, pred_mojo, 0.1, tol=1e-10
) # make sure operation sequence is preserved from Tomk h2o.save_model(glmOrdinalModel, path=TMPDIR, force=True) # save model for debugging
print("Comparing pojo predict and h2o predict...")
pyunit_utils.compare_frames_local(pred_mojo, pred_pojo, 0.1, tol=1e-10)
def run_comparison_tests(auto_encoder, act_fun, missing_values_handling, set_all_factor, train, test, x):
# set deeplearning model parameters
params = set_params(act_fun, missing_values_handling, set_all_factor, auto_encoder)
if auto_encoder:
try:
# build and save mojo model
deeplearning_model = build_save_model(params, x, train)
except Exception as err:
if not("Trying to predict with an unstable model" in err.args[0]):
raise Exception('Deeplearning autoencoder model failed to build. Fix it.')
return
else:
# build and save mojo model
deeplearning_model = build_save_model(params, x, train)
# save test file, h2o predict/mojo use same file
h2o.download_csv(test[x], os.path.join(TMPDIR, 'in.csv'))
# load model and perform predict
pred_h2o, pred_mojo = pyunit_utils.mojo_predict(deeplearning_model, TMPDIR, MOJONAME)
pred_pojo = pyunit_utils.pojo_predict(deeplearning_model, TMPDIR, MOJONAME)
# save model for debugging
h2o.save_model(deeplearning_model, path=TMPDIR, force=True)
print("Comparing mojo predict and h2o predict...")
pyunit_utils.compare_frames_local_onecolumn_NA(pred_h2o, pred_mojo, prob=1, tol=1e-10)
print("Comparing pojo predict and h2o predict...")
pyunit_utils.compare_frames_local_onecolumn_NA(pred_mojo, pred_pojo, prob=1, tol=1e-10)
def glm_ordinal_mojo_pojo():
h2o.remove_all()
params = set_params() # set deeplearning model parameters
df = random_dataset(PROBLEM) # generate random dataset
train = df[NTESTROWS:, :]
test = df[:NTESTROWS, :]
x = list(set(df.names) - {"response"})
try:
glmOrdinalModel = build_save_model(
params, x, train, "response") # build and save mojo model
h2o.download_csv(test[x], os.path.join(
TMPDIR,
'in.csv')) # save test file, h2o predict/mojo use same file
pred_h2o, pred_mojo = pyunit_utils.mojo_predict(
glmOrdinalModel, TMPDIR,
MOJONAME) # load model and perform predict
h2o.download_csv(pred_h2o, os.path.join(TMPDIR, "h2oPred.csv"))
pred_pojo = pyunit_utils.pojo_predict(glmOrdinalModel, TMPDIR,
MOJONAME)
print("Comparing mojo predict and h2o predict...")
pyunit_utils.compare_frames_local(
pred_h2o, pred_mojo, 0.1, tol=1e-10
) # make sure operation sequence is preserved from Tomk h2o.save_model(glmOrdinalModel, path=TMPDIR, force=True) # save model for debugging
print("Comparing pojo predict and h2o predict...")
pyunit_utils.compare_frames_local(pred_mojo, pred_pojo, 0.1, tol=1e-10)
except Exception as ex:
print("*************** ERROR and type is ")
print(str(type(ex)))
print(ex)
if "AssertionError" in str(
type(ex)
): # only care if there is an AssertionError, ignore the others
sys.exit(1)
def glm_multinomial_mojo_pojo():
PROBLEM = "multinomial"
NTESTROWS = 200
params = set_params() # set deeplearning model parameters
df = pyunit_utils.random_dataset(PROBLEM) # generate random dataset
train = df[NTESTROWS:, :]
test = df[:NTESTROWS, :]
x = list(set(df.names) - {"response"})
glmMultinomialModel = pyunit_utils.build_save_model_GLM(
params, x, train, "response") # build and save mojo model
MOJONAME = pyunit_utils.getMojoName(glmMultinomialModel._id)
TMPDIR = os.path.normpath(
os.path.join(os.path.dirname(os.path.realpath('__file__')), "..",
"results", MOJONAME))
h2o.download_csv(test[x], os.path.join(
TMPDIR, 'in.csv')) # save test file, h2o predict/mojo use same file
pred_h2o, pred_mojo = pyunit_utils.mojo_predict(
glmMultinomialModel, TMPDIR,
MOJONAME) # load model and perform predict
h2o.download_csv(pred_h2o, os.path.join(TMPDIR, "h2oPred.csv"))
pred_pojo = pyunit_utils.pojo_predict(glmMultinomialModel, TMPDIR,
MOJONAME)
print("Comparing mojo predict and h2o predict...")
pyunit_utils.compare_frames_local(
pred_h2o, pred_mojo, 0.1, tol=1e-10
) # make sure operation sequence is preserved from Tomk h2o.save_model(glmOrdinalModel, path=TMPDIR, force=True) # save model for debugging
print("Comparing pojo predict and h2o predict...")
pyunit_utils.compare_frames_local(pred_mojo, pred_pojo, 0.1, tol=1e-10)
def deeplearning_mojo_pojo():
h2o.remove_all()
params = set_params() # set deeplearning model parameters
df = random_dataset(PROBLEM) # generate random dataset
train = df[NTESTROWS:, :]
test = df[:NTESTROWS, :]
x = list(set(df.names) - {"response"})
try:
deeplearningModel = build_save_model(params, x, train) # build and save mojo model
h2o.download_csv(test[x], os.path.join(TMPDIR, 'in.csv')) # save test file, h2o predict/mojo use same file
pred_h2o, pred_mojo = pyunit_utils.mojo_predict(deeplearningModel, TMPDIR, MOJONAME) # load model and perform predict
pred_pojo = pyunit_utils.pojo_predict(deeplearningModel, TMPDIR, MOJONAME)
h2o.save_model(deeplearningModel, path=TMPDIR, force=True) # save model for debugging
print("Comparing mojo predict and h2o predict...")
pyunit_utils.compare_numeric_frames(pred_h2o, pred_mojo, 0.1, tol=1e-10) # make sure operation sequence is preserved from Tomk
print("Comparing pojo predict and h2o predict...")
pyunit_utils.compare_numeric_frames(pred_mojo, pred_pojo, 0.1, tol=1e-10)
except Exception as ex:
print("*************** ERROR and type is ")
print(str(type(ex)))
print(ex)
if "AssertionError" in str(type(ex)): # only care if there is an AssertionError, ignore the others
sys.exit(1)
def runComparisonTests(autoEncoder, probleyType):
params = set_params(autoEncoder) # set deeplearning model parameters
df = random_dataset(probleyType) # generate random dataset
train = df[NTESTROWS:, :]
test = df[:NTESTROWS, :]
x = list(set(df.names) - {"response"})
deeplearningModel = build_save_model(params, x, train) # build and save mojo model
h2o.download_csv(test[x], os.path.join(TMPDIR, 'in.csv')) # save test file, h2o predict/mojo use same file
pred_h2o, pred_mojo = pyunit_utils.mojo_predict(deeplearningModel, TMPDIR, MOJONAME) # load model and perform predict
pred_pojo = pyunit_utils.pojo_predict(deeplearningModel, TMPDIR, MOJONAME)
h2o.save_model(deeplearningModel, path=TMPDIR, force=True) # save model for debugging
print("Comparing mojo predict and h2o predict...")
pyunit_utils.compare_frames_local_onecolumn_NA(pred_h2o, pred_mojo, prob=1, tol=1e-10)
print("Comparing pojo predict and h2o predict...")
pyunit_utils.compare_frames_local_onecolumn_NA(pred_mojo, pred_pojo, prob=1, tol=1e-10)
def compare_preds(train, test, x, y, booster, ntrees, max_depth, max_error):
model = H2OXGBoostEstimator(booster=booster,
seed=1,
ntrees=ntrees,
max_depth=max_depth)
model.train(training_frame=train, x=x, y=y)
mojo_name = pyunit_utils.getMojoName(model._id)
tmp_dir = os.path.normpath(
os.path.join(os.path.dirname(os.path.realpath('__file__')), "..",
"results", mojo_name))
os.makedirs(tmp_dir)
model.download_mojo(path=tmp_dir)
h2o.download_csv(test[x], os.path.join(tmp_dir, 'in.csv'))
pred_h2o = model.predict(test[x])
h2o.download_csv(pred_h2o, os.path.join(tmp_dir, "out_h2o.csv"))
pred_pojo = pyunit_utils.pojo_predict(model, tmp_dir, mojo_name)
print("%s: Comparing pojo %s predict and h2o predict..." %
(model._id, booster))
pyunit_utils.compare_frames_local(pred_h2o, pred_pojo, 1, tol=max_error)
def glm_multinomial_mojo_pojo():
PROBLEM="multinomial"
NTESTROWS=200
params = set_params() # set deeplearning model parameters
df = pyunit_utils.random_dataset(PROBLEM) # generate random dataset
train = df[NTESTROWS:, :]
test = df[:NTESTROWS, :]
x = list(set(df.names) - {"response"})
glmMultinomialModel = pyunit_utils.build_save_model_GLM(params, x, train, "response") # build and save mojo model
MOJONAME = pyunit_utils.getMojoName(glmMultinomialModel._id)
TMPDIR = os.path.normpath(os.path.join(os.path.dirname(os.path.realpath('__file__')), "..", "results", MOJONAME))
h2o.download_csv(test[x], os.path.join(TMPDIR, 'in.csv')) # save test file, h2o predict/mojo use same file
pred_h2o, pred_mojo = pyunit_utils.mojo_predict(glmMultinomialModel, TMPDIR, MOJONAME) # load model and perform predict
h2o.download_csv(pred_h2o, os.path.join(TMPDIR, "h2oPred.csv"))
pred_pojo = pyunit_utils.pojo_predict(glmMultinomialModel, TMPDIR, MOJONAME)
print("Comparing mojo predict and h2o predict...")
pyunit_utils.compare_frames_local(pred_h2o, pred_mojo, 0.1, tol=1e-10) # make sure operation sequence is preserved from Tomk h2o.save_model(glmOrdinalModel, path=TMPDIR, force=True) # save model for debugging
print("Comparing pojo predict and h2o predict...")
pyunit_utils.compare_frames_local(pred_mojo, pred_pojo, 0.1, tol=1e-10)
def runComparisonTests(autoEncoder, probleyType):
params = set_params(autoEncoder) # set deeplearning model parameters
df = random_dataset(probleyType) # generate random dataset
train = df[NTESTROWS:, :]
test = df[:NTESTROWS, :]
x = list(set(df.names) - {"response"})
if autoEncoder:
try:
deeplearningModel = build_save_model(
params, x, train) # build and save mojo model
except Exception as err:
if not ("Trying to predict with an unstable model" in err.args[0]):
raise Exception(
'Deeplearning autoencoder model failed to build. Fix it.')
return
else:
deeplearningModel = build_save_model(
params, x, train) # build and save mojo model
h2o.download_csv(test[x], os.path.join(
TMPDIR, 'in.csv')) # save test file, h2o predict/mojo use same file
pred_h2o, pred_mojo = pyunit_utils.mojo_predict(
deeplearningModel, TMPDIR, MOJONAME) # load model and perform predict
pred_pojo = pyunit_utils.pojo_predict(deeplearningModel, TMPDIR, MOJONAME)
h2o.save_model(deeplearningModel, path=TMPDIR,
force=True) # save model for debugging
print("Comparing mojo predict and h2o predict...")
pyunit_utils.compare_frames_local_onecolumn_NA(pred_h2o,
pred_mojo,
prob=1,
tol=1e-10)
print("Comparing pojo predict and h2o predict...")
pyunit_utils.compare_frames_local_onecolumn_NA(pred_mojo,
pred_pojo,
prob=1,
tol=1e-10)
