def test_liouville_to_choi(self):
"""Test converting Liouville superops to choi matrices."""
for d in rng.randint(2, 9, (15, )):
# unitary channel
U = testutil.rand_unit(d, rng.randint(1, 8)).squeeze()
n = np.log2(d)
if n % 1 == 0:
basis = ff.Basis.pauli(int(n))
else:
basis = ff.Basis.ggm(d)
U_sup = superoperator.liouville_representation(U, basis)
choi = superoperator.liouville_to_choi(U_sup, basis).view(ff.Basis)
self.assertTrue(choi.isherm)
self.assertArrayAlmostEqual(np.einsum('...ii', choi), d)
pulse = testutil.rand_pulse_sequence(d, 1)
omega = ff.util.get_sample_frequencies(pulse)
S = 1 / abs(omega)**2
U_sup = ff.error_transfer_matrix(pulse, S, omega)
choi = superoperator.liouville_to_choi(U_sup, basis).view(ff.Basis)
self.assertTrue(choi.isherm)
self.assertAlmostEqual(np.einsum('ii', choi), d)
def test_basis_generation_from_partial_pauli(self):
""""Generate complete basis from partial elements of a Pauli basis"""
# Do 100 test runs with random elements from a Pauli basis in (2 ... 8)
# dimensions
for _ in range(50):
n = rng.randint(1, 4)
d = 2**n
b = ff.Basis.pauli(n)
inds = [i for i in range(d**2)]
tup = tuple(
inds.pop(rng.randint(0, len(inds)))
for _ in range(rng.randint(1, d**2)))
elems = b[tup, ...]
basis = ff.Basis(elems)
self.assertTrue(basis.isorthonorm)
self.assertTrue(basis.isherm)
self.assertTrue(basis.istraceless)
self.assertTrue(basis.iscomplete)
self.assertTrue(all(elem in basis for elem in elems))
with self.assertWarns(UserWarning):
b = [basis[0], 1j * basis[1]]
ff.Basis(b)
with self.assertRaises(ValueError):
b = [basis[0], basis[0] + basis[1]]
ff.Basis(b)
def test_multi_qubit_error_transfer_matrix(self):
"""Test the calculation of the multi-qubit transfer matrix"""
n_cops = 4
n_nops = 2
for d, n_dt in zip(rng.randint(3, 9, 10), rng.randint(1, 11, 10)):
f, n = np.modf(np.log2(d))
btype = 'Pauli' if f == 0.0 else 'GGM'
pulse = testutil.rand_pulse_sequence(d, n_dt, n_cops, n_nops,
btype)
omega = util.get_sample_frequencies(pulse, n_samples=51)
# Assert fidelity is same as computed by infidelity()
S = 1e-8 / omega**2
U = ff.error_transfer_matrix(pulse, S, omega)
# Calculate U in loop
Up = ff.error_transfer_matrix(pulse,
S,
omega,
memory_parsimonious=True)
I_fidelity = ff.infidelity(pulse, S, omega)
I_transfer = 1 - np.einsum('...ii', U) / d**2
self.assertArrayAlmostEqual(Up, U)
self.assertArrayAlmostEqual(I_transfer,
I_fidelity.sum(),
atol=1e-4)
S = np.outer(1e-7 * (np.arange(n_nops) + 1),
400 / (omega**2 + 400))
U = ff.error_transfer_matrix(pulse, S, omega)
# Calculate U in loop
Up = ff.error_transfer_matrix(pulse,
S,
omega,
memory_parsimonious=True)
I_fidelity = ff.infidelity(pulse, S, omega)
I_transfer = 1 - np.einsum('...ii', U) / d**2
self.assertArrayAlmostEqual(Up, U)
self.assertArrayAlmostEqual(I_transfer,
I_fidelity.sum(),
atol=1e-4)
S = np.tile(1e-8 / abs(omega)**2,
(n_nops, n_nops, 1)).astype(complex)
S[np.triu_indices(n_nops, 1)].imag = 1e-10 * omega
S[np.tril_indices(n_nops, -1)].imag = \
- S[np.triu_indices(n_nops, 1)].imag
U = ff.error_transfer_matrix(pulse, S, omega)
# Calculate U in loop
Up = ff.error_transfer_matrix(pulse,
S,
omega,
memory_parsimonious=True)
I_fidelity = ff.infidelity(pulse, S, omega)
I_transfer = 1 - np.einsum('...ii', U) / d**2
self.assertArrayAlmostEqual(Up, U)
self.assertArrayAlmostEqual(I_transfer,
I_fidelity.sum(),
atol=1e-4)
def test_basis_properties(self):
"""Basis orthonormal and of correct dimensions"""
d = rng.randint(2, 17)
n = rng.randint(1, 5)
ggm_basis = ff.Basis.ggm(d)
pauli_basis = ff.Basis.pauli(n)
custom_basis = ff.Basis(testutil.rand_herm(d), traceless=False)
btypes = ('Pauli', 'GGM', 'Custom')
bases = (pauli_basis, ggm_basis, custom_basis)
for btype, base in zip(btypes, bases):
base.tidyup(eps_scale=0)
self.assertTrue(base == base)
self.assertFalse(base == ff.Basis.ggm(d + 1))
self.assertEqual(btype, base.btype)
if not btype == 'Pauli':
self.assertEqual(d, base.d)
# Check if __contains__ works as expected
self.assertTrue(base[rng.randint(0, d**2)] in base)
else:
self.assertEqual(2**n, base.d)
# Check if __contains__ works as expected
self.assertTrue(base[rng.randint(0, (2**n)**2)] in base)
# Check if all elements of each basis are orthonormal and hermitian
self.assertArrayEqual(base.T,
base.view(np.ndarray).swapaxes(-1, -2))
self.assertTrue(base.isorthonorm)
self.assertTrue(base.isherm)
# Check if basis spans the whole space and all elems are traceless
if not btype == 'Custom':
self.assertTrue(base.istraceless)
else:
self.assertFalse(base.istraceless)
self.assertTrue(base.iscomplete)
# Check sparse representation
self.assertArrayEqual(base.sparse.todense(), base)
# Test sparse cache
self.assertArrayEqual(base.sparse.todense(), base)
if base.d < 8:
# Test very resource intense
ref = np.einsum('iab,jbc,kcd,lda', *(base, ) * 4)
self.assertArrayAlmostEqual(base.four_element_traces.todense(),
ref,
atol=1e-16)
# Test setter
base._four_element_traces = None
base.four_element_traces = ref
self.assertArrayEqual(base.four_element_traces, ref)
base._print_checks()
basis = ff.util.paulis[1].view(ff.Basis)
self.assertTrue(basis.isorthonorm)
self.assertArrayEqual(basis.T, basis.view(np.ndarray).T)
def test_tensor_transpose(self):
# Test basic functionality
paulis = np.array(util.paulis)
I, X, Y, Z = paulis
arr = util.tensor(I, X, Y, Z)
arr_dims = [[2] * 4] * 2
order = np.arange(4)
for _ in range(20):
order = rng.permutation(order)
r = util.tensor_transpose(arr, order, arr_dims)
self.assertArrayAlmostEqual(r, util.tensor(*paulis[order]))
# Check exceptions
with self.assertRaises(ValueError):
# wrong arr_dims (too few dims)
r = util.tensor_transpose(arr, order, [[2] * 3] * 2)
with self.assertRaises(ValueError):
# wrong arr_dims (too few dims)
r = util.tensor_transpose(arr, order, [[2] * 4] * 1)
with self.assertRaises(ValueError):
# wrong arr_dims (dims too large)
r = util.tensor_transpose(arr, order, [[3] * 4] * 2)
with self.assertRaises(ValueError):
# wrong order (too few axes)
r = util.tensor_transpose(arr, (0, 1, 2), arr_dims)
with self.assertRaises(ValueError):
# wrong order (index 4 too large)
r = util.tensor_transpose(arr, (1, 2, 3, 4), arr_dims)
with self.assertRaises(ValueError):
# wrong order (not unique axes)
r = util.tensor_transpose(arr, (1, 1, 1, 1), arr_dims)
with self.assertRaises(TypeError):
# wrong order (floats instead of ints)
r = util.tensor_transpose(arr, (0., 1., 2., 3.), arr_dims)
# random tests
for rank, n_args, n_broadcast in zip(rng.randint(1, 4, 10),
rng.randint(3, 6, 10),
rng.randint(1, 11, 10)):
arrs = rng.standard_normal((n_args, n_broadcast, *[2] * rank))
order = rng.permutation(n_args)
arr_dims = [[2] * n_args] * rank
r = util.tensor_transpose(util.tensor(*arrs, rank=rank),
order=order,
arr_dims=arr_dims,
rank=rank)
self.assertArrayAlmostEqual(r, util.tensor(*arrs[order],
rank=rank))
def test_oper_equiv(self):
with self.assertRaises(ValueError):
util.oper_equiv(rng.standard_normal((2, 2)),
rng.standard_normal((3, 3)))
for d in rng.randint(2, 10, (5, )):
psi = rng.standard_normal((d, 1)) + 1j * rng.standard_normal(
(d, 1))
# Also test broadcasting
U = testutil.rand_herm(d, rng.randint(1, 11)).squeeze()
phase = rng.standard_normal()
result = util.oper_equiv(psi, psi * np.exp(1j * phase))
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], phase, places=5)
result = util.oper_equiv(psi * np.exp(1j * phase), psi)
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], -phase, places=5)
psi /= np.linalg.norm(psi, ord=2)
result = util.oper_equiv(psi,
psi * np.exp(1j * phase),
normalized=True,
eps=1e-13)
self.assertTrue(result[0])
self.assertArrayAlmostEqual(result[1], phase, atol=1e-5)
result = util.oper_equiv(psi, psi + 1)
self.assertFalse(result[0])
result = util.oper_equiv(U, U * np.exp(1j * phase))
self.assertTrue(np.all(result[0]))
self.assertArrayAlmostEqual(result[1], phase, atol=1e-5)
result = util.oper_equiv(U * np.exp(1j * phase), U)
self.assertTrue(np.all(result[0]))
self.assertArrayAlmostEqual(result[1], -phase, atol=1e-5)
norm = np.sqrt(util.dot_HS(U, U))
norm = norm[:, None, None] if U.ndim == 3 else norm
U /= norm
# TIP: In numpy 1.18 we could just do:
# U /= np.expand_dims(np.sqrt(util.dot_HS(U, U)), axis=(-1, -2))
result = util.oper_equiv(U,
U * np.exp(1j * phase),
normalized=True,
eps=1e-10)
self.assertTrue(np.all(result[0]))
self.assertArrayAlmostEqual(result[1], phase)
result = util.oper_equiv(U, U + 1)
self.assertFalse(np.all(result[0]))
def test_tensor(self):
shapes = [(1, 2, 3, 4, 5), (5, 4, 3, 2, 1)]
A = rng.standard_normal(shapes[0])
B = rng.standard_normal(shapes[1])
with self.assertRaises(ValueError):
util.tensor(A, B)
shapes = [(3, 2, 1), (3, 4, 2)]
A = rng.standard_normal(shapes[0])
B = rng.standard_normal(shapes[1])
with self.assertRaises(ValueError):
util.tensor(A, B, rank=1)
self.assertEqual(util.tensor(A, B, rank=2).shape, (3, 8, 2))
self.assertEqual(util.tensor(A, B, rank=3).shape, (9, 8, 2))
shapes = [(10, 1, 3, 2), (10, 1, 2, 3)]
A = rng.standard_normal(shapes[0])
B = rng.standard_normal(shapes[1])
self.assertEqual(util.tensor(A, B).shape, (10, 1, 6, 6))
shapes = [(3, 5, 4, 4), (3, 5, 4, 4)]
A = rng.standard_normal(shapes[0])
B = rng.standard_normal(shapes[1])
self.assertEqual(util.tensor(A, B).shape, (3, 5, 16, 16))
d = rng.randint(2, 9)
eye = np.eye(d)
for i in range(d):
for j in range(d):
A, B = eye[i:i + 1, :], eye[:, j:j + 1]
self.assertArrayEqual(util.tensor(A, B, rank=1), np.kron(A, B))
i, j = rng.randint(0, 4, (2, ))
A, B = util.paulis[i], util.paulis[j]
self.assertArrayEqual(util.tensor(A, B), np.kron(A, B))
args = [
rng.standard_normal((4, 1, 2)),
rng.standard_normal((3, 2)),
rng.standard_normal((4, 3, 5))
]
self.assertEqual(util.tensor(*args, rank=1).shape, (4, 3, 20))
self.assertEqual(util.tensor(*args, rank=2).shape, (4, 9, 20))
self.assertEqual(util.tensor(*args, rank=3).shape, (16, 9, 20))
args = [rng.standard_normal((2, 3, 4)), rng.standard_normal((4, 3))]
with self.assertRaises(ValueError) as err:
util.tensor(*args, rank=1)
msg = ('Incompatible shapes (2, 3, 4) and (4, 3) for tensor ' +
'product of rank 1.')
self.assertEqual(msg, str(err.exception))
def test_multi_qubit_error_transfer_matrix(self):
"""Test the calculation of the multi-qubit transfer matrix"""
n_cops = 4
n_nops = 2
for d, n_dt in zip(rng.randint(3, 9, 10), rng.randint(1, 11, 10)):
f, n = np.modf(np.log2(d))
btype = 'Pauli' if f == 0.0 else 'GGM'
pulse = testutil.rand_pulse_sequence(d, n_dt, n_cops, n_nops,
btype)
omega = ff.util.get_sample_frequencies(pulse, n_samples=51)
# Assert fidelity is same as computed by infidelity()
S = 1e-2 / omega**2
U = ff.error_transfer_matrix(pulse, S, omega)
# Calculate U in loop
Up = ff.error_transfer_matrix(pulse,
S,
omega,
memory_parsimonious=True)
self.assertArrayAlmostEqual(Up, U)
I_fidelity = ff.infidelity(pulse, S, omega)
I_transfer = np.einsum('...ii', U) / d**2
self.assertArrayAlmostEqual(I_transfer, I_fidelity)
S = np.outer(1e-2 * (np.arange(n_nops) + 1),
400 / (omega**2 + 400))
U = ff.error_transfer_matrix(pulse, S, omega)
# Calculate U in loop
Up = ff.error_transfer_matrix(pulse,
S,
omega,
memory_parsimonious=True)
self.assertArrayAlmostEqual(Up, U)
I_fidelity = ff.infidelity(pulse, S, omega)
I_transfer = np.einsum('...ii', U) / d**2
self.assertArrayAlmostEqual(I_transfer, I_fidelity)
S = np.einsum('i,j,o->ijo', 1e-2 * (np.arange(n_nops) + 1),
1e-2 * (np.arange(n_nops) + 1),
400 / (omega**2 + 400))
U = ff.error_transfer_matrix(pulse, S, omega)
# Calculate U in loop
Up = ff.error_transfer_matrix(pulse,
S,
omega,
memory_parsimonious=True)
self.assertArrayAlmostEqual(Up, U)
I_fidelity = ff.infidelity(pulse, S, omega)
I_transfer = np.einsum('...ii', U) / d**2
self.assertArrayAlmostEqual(I_transfer, I_fidelity)
def test_dot_HS(self):
U, V = rng.randint(0, 100, (2, 2, 2))
S = util.dot_HS(U, V)
T = util.dot_HS(U, V, eps=0)
self.assertArrayEqual(S, T)
for d in rng.randint(2, 10, (5, )):
U, V = testutil.rand_herm(d, 2)
self.assertArrayAlmostEqual(util.dot_HS(U, V),
(U.conj().T @ V).trace())
U = testutil.rand_unit(d).squeeze()
self.assertEqual(util.dot_HS(U, U), d)
self.assertEqual(util.dot_HS(U, U + 1e-14, eps=1e-10), d)
def test_liouville_is_cCP(self):
for d in rng.randint(2, 9, (15, )):
# (anti-) Hermitian generator, should always be cCP
H = 1j * testutil.rand_herm(d, rng.randint(1, 8)).squeeze()
n = np.log2(d)
if n % 1 == 0:
basis = ff.Basis.pauli(int(n))
else:
basis = ff.Basis.ggm(d)
H_sup = (np.einsum('iab,...bc,jca',
basis,
H,
basis,
optimize=['einsum_path', (0, 1), (0, 1)]) -
np.einsum('iab,jbc,...ca',
basis,
basis,
H,
optimize=['einsum_path', (0, 2), (0, 1)]))
cCP, (D, V) = superoperator.liouville_is_cCP(H_sup, basis, True)
_cCP = superoperator.liouville_is_cCP(H_sup, basis, False)
self.assertArrayEqual(cCP, _cCP)
self.assertTrue(np.all(cCP))
if H_sup.ndim == 2:
self.assertIsInstance(cCP, (bool, np.bool8))
else:
self.assertEqual(cCP.shape[0], H_sup.shape[0])
self.assertArrayAlmostEqual(D, 0, atol=1e-14)
self.assertTrue(
ff.util.oper_equiv(V,
np.eye(d**2)[None, :, :],
normalized=True))
pulse = testutil.rand_pulse_sequence(d, 1)
omega = ff.util.get_sample_frequencies(pulse)
S = 1 / abs(omega)**2
K_sup = ff.numeric.calculate_cumulant_function(pulse, S, omega)
cCP = superoperator.liouville_is_cCP(K_sup,
pulse.basis,
False,
atol=1e-13)
self.assertTrue(np.all(cCP))
if K_sup.ndim == 2:
self.assertIsInstance(cCP, (bool, np.bool8))
else:
self.assertEqual(cCP.shape[0], K_sup.shape[0])
def test_basis_expansion_and_normalization(self):
"""Correct expansion of operators and normalization of bases"""
for _ in range(10):
d = rng.randint(2, 16)
ggm_basis = ff.Basis.ggm(d)
basis = ff.Basis(np.einsum('i,ijk->ijk', rng.standard_normal(d**2),
ggm_basis),
skip_check=True)
M = rng.standard_normal((d, d)) + 1j * rng.standard_normal((d, d))
M -= np.trace(M) / d
coeffs = ff.basis.expand(M, basis, normalized=False)
self.assertArrayAlmostEqual(M, np.einsum('i,ijk', coeffs, basis))
self.assertArrayAlmostEqual(ff.basis.expand(M, ggm_basis),
ff.basis.ggm_expand(M),
atol=1e-14)
self.assertArrayAlmostEqual(ff.basis.ggm_expand(M),
ff.basis.ggm_expand(M, traceless=True),
atol=1e-14)
n = rng.randint(1, 50)
M = (rng.standard_normal((n, d, d)) + 1j * rng.standard_normal(
(n, d, d)))
coeffs = ff.basis.expand(M, basis, normalized=False)
self.assertArrayAlmostEqual(
M, np.einsum('li,ijk->ljk', coeffs, basis))
self.assertArrayAlmostEqual(ff.basis.expand(M, ggm_basis),
ff.basis.ggm_expand(M),
atol=1e-14)
# Argument to ggm_expand not square in last two dimensions
with self.assertRaises(ValueError):
ff.basis.ggm_expand(basis[..., 0])
self.assertTrue(ff.basis.normalize(basis).isorthonorm)
# Basis method and function should give the same
normalized = ff.basis.normalize(basis)
basis.normalize()
self.assertEqual(normalized, basis)
# normalize single element
elem = basis[1]
normalized = ff.basis.normalize(elem)
elem.normalize()
self.assertEqual(normalized, elem)
# Not matrix or sequence of matrices
with self.assertRaises(ValueError):
ff.basis.normalize(basis[0, 0])
def test_plot_pulse_correlation_filter_function(self):
omega = np.linspace(-1, 1, 50)
concatenated_simple_pulse = ff.concatenate(
(simple_pulse, simple_pulse),
calc_pulse_correlation_FF=True,
omega=omega)
concatenated_complicated_pulse = ff.concatenate(
(complicated_pulse, complicated_pulse),
calc_pulse_correlation_FF=True,
omega=omega)
# Exception if not pulse correl. FF is cached
with self.assertRaises(ff.util.CalculationError):
plotting.plot_pulse_correlation_filter_function(simple_pulse)
# Call with default args
fig, ax, leg = plotting.plot_pulse_correlation_filter_function(
concatenated_simple_pulse)
# Non-default args
n_oper_identifiers = sample(
complicated_pulse.n_oper_identifiers.tolist(), rng.randint(2, 4))
fig, ax = plt.subplots()
omega = np.linspace(-10, 10, 50)
fig, ax, leg = plotting.plot_pulse_correlation_filter_function(
concatenated_complicated_pulse,
omega=omega,
n_oper_identifiers=n_oper_identifiers,
fig=fig,
omega_in_units_of_tau=False)
# invalid identifiers
with self.assertRaises(ValueError):
plotting.plot_pulse_correlation_filter_function(
concatenated_complicated_pulse,
n_oper_identifiers=['foo'],
fig=fig,
axes=ax)
# Test different axis scales
scales = ('linear', 'log')
for xscale in scales:
for yscale in scales:
fig, ax, leg = plotting.plot_pulse_correlation_filter_function(
concatenated_simple_pulse, xscale=xscale, yscale=yscale)
# Test various keyword args for matplotlib
plot_kw = {'linewidth': 1}
subplot_kw = {'facecolor': 'r'}
gridspec_kw = {'hspace': 0.2, 'wspace': 0.1}
figure_kw = {'num': 1}
fig, ax, leg = plotting.plot_pulse_correlation_filter_function(
concatenated_simple_pulse,
plot_kw=plot_kw,
subplot_kw=subplot_kw,
gridspec_kw=gridspec_kw,
**figure_kw)
plt.close('all')
def test_calculation_with_unitaries(self):
for d, G in zip(rng.randint(2, 9, (11, )), rng.randint(2, 11, (11, ))):
pulses = [
testutil.rand_pulse_sequence(d, rng.randint(1, 11), 2, 4)
for g in range(G)
]
for pulse in pulses:
# All pulses should have same n_opers for xxx_from_atomic
pulse.n_opers = pulses[0].n_opers
pulse.n_oper_identifiers = pulses[0].n_oper_identifiers
if rng.randint(0, 2):
pulse.t = None
omega = rng.rand(17)
B_atomic = np.array([
numeric.calculate_noise_operators_from_scratch(
pulse.eigvals, pulse.eigvecs, pulse.propagators, omega,
pulse.n_opers, pulse.n_coeffs, pulse.dt, pulse.t)
for pulse in pulses
])
R_atomic = np.array([
numeric.calculate_control_matrix_from_scratch(
pulse.eigvals, pulse.eigvecs, pulse.propagators, omega,
pulse.basis, pulse.n_opers, pulse.n_coeffs, pulse.dt,
pulse.t) for pulse in pulses
])
self.assertArrayAlmostEqual(ff.basis.expand(B_atomic, pulse.basis),
R_atomic.transpose(0, 3, 1, 2),
atol=1e-14)
B = numeric.calculate_noise_operators_from_atomic(
np.array([pulse.get_total_phases(omega)
for pulse in pulses]), B_atomic,
np.array([pulse.total_propagator for pulse in pulses]))
R = numeric.calculate_control_matrix_from_atomic(
np.array([pulse.get_total_phases(omega) for pulse in pulses]),
R_atomic,
np.array(
[pulse.total_propagator_liouville for pulse in pulses]))
self.assertArrayAlmostEqual(ff.basis.expand(B, pulse.basis),
R.transpose(2, 0, 1),
atol=1e-14)
def test_basis_generation_from_partial_ggm(self):
""""Generate complete basis from partial elements of a GGM basis"""
# Do 100 test runs with random elements from a GGM basis in (2 ... 8)
# dimensions
for _ in range(50):
d = rng.randint(2, 9)
b = ff.Basis.ggm(d)
inds = [i for i in range(d**2)]
tup = tuple(
inds.pop(rng.randint(0, len(inds)))
for _ in range(rng.randint(1, d**2)))
elems = b[tup, ...]
basis = ff.Basis(elems)
self.assertTrue(basis.isorthonorm)
self.assertTrue(basis.isherm)
self.assertTrue(basis.istraceless)
self.assertTrue(basis.iscomplete)
self.assertTrue(all(elem in basis for elem in elems))
def test_liouville_is_CP(self):
def partial_transpose(A):
d = A.shape[-1]
sqd = int(np.sqrt(d))
return A.reshape(-1, sqd, sqd, sqd,
sqd).swapaxes(-1, -3).reshape(A.shape)
# Partial transpose map should be non-CP
basis = ff.Basis.pauli(2)
Phi = ff.basis.expand(partial_transpose(basis), basis).T
CP = superoperator.liouville_is_CP(Phi, basis)
self.assertFalse(CP)
for d in rng.randint(2, 9, (15, )):
# unitary channel
U = testutil.rand_unit(d, rng.randint(1, 8)).squeeze()
n = np.log2(d)
if n % 1 == 0:
basis = ff.Basis.pauli(int(n))
else:
basis = ff.Basis.ggm(d)
U_sup = superoperator.liouville_representation(U, basis)
CP, (D, V) = superoperator.liouville_is_CP(U_sup, basis, True)
_CP = superoperator.liouville_is_CP(U_sup, basis, False)
self.assertArrayEqual(CP, _CP)
self.assertTrue(np.all(CP))
if U_sup.ndim == 2:
self.assertIsInstance(CP, (bool, np.bool8))
else:
self.assertEqual(CP.shape[0], U_sup.shape[0])
# Only one nonzero eigenvalue
self.assertArrayAlmostEqual(D[..., :-1], 0, atol=basis._atol)
pulse = testutil.rand_pulse_sequence(d, 1)
omega = ff.util.get_sample_frequencies(pulse)
S = 1 / abs(omega)**2
U_sup = ff.error_transfer_matrix(pulse, S, omega)
CP = superoperator.liouville_is_CP(U_sup, pulse.basis)
self.assertTrue(np.all(CP))
self.assertIsInstance(CP, (bool, np.bool8))
def test_remove_float_errors(self):
for eps_scale in (None, 2):
scale = eps_scale or 1
for dtype in (float, complex):
arr = np.zeros((10, 10), dtype=dtype)
arr += scale*np.finfo(arr.dtype).eps *\
rng.random_sample(arr.shape)
arr[rng.randint(0, 2, arr.shape, dtype=bool)] *= -1
arr = util.remove_float_errors(arr, eps_scale)
self.assertArrayEqual(arr, np.zeros(arr.shape, dtype=dtype))
def test_plot_filter_function(self):
# Call with default args
simple_pulse.cleanup('all')
fig, ax, leg = plotting.plot_filter_function(simple_pulse)
# Call with no axes but figure
fig = plt.figure()
fig, ax, leg = plotting.plot_filter_function(simple_pulse, fig=fig)
# Call with axes but no figure
fig, ax, leg = plotting.plot_filter_function(simple_pulse, axes=ax)
# Non-default args
n_oper_identifiers = sample(
complicated_pulse.n_oper_identifiers.tolist(), rng.randint(2, 4))
fig, ax = plt.subplots()
omega = ff.util.get_sample_frequencies(complicated_pulse,
n_samples=50,
spacing='log')
fig, ax, leg = plotting.plot_filter_function(
complicated_pulse,
omega=omega,
n_oper_identifiers=n_oper_identifiers,
fig=fig,
axes=ax,
omega_in_units_of_tau=False)
# invalid identifier
with self.assertRaises(ValueError):
plotting.plot_filter_function(complicated_pulse,
n_oper_identifiers=['foo'],
fig=fig,
axes=ax)
# Test different axis scales
scales = ('linear', 'log')
for xscale in scales:
for yscale in scales:
fig, ax, leg = plotting.plot_filter_function(simple_pulse,
xscale=xscale,
yscale=yscale)
# Test various keyword args for matplotlib
plot_kw = {'linewidth': 1}
subplot_kw = {'facecolor': 'r'}
gridspec_kw = {'hspace': 0.2, 'wspace': 0.1}
figure_kw = {'num': 1}
fig, ax, leg = plotting.plot_filter_function(simple_pulse,
plot_kw=plot_kw,
subplot_kw=subplot_kw,
gridspec_kw=gridspec_kw,
**figure_kw)
plt.close('all')
def test_all_array_equal(self):
for n in rng.randint(2, 10, (10, )):
gen = (np.ones((10, 10)) for _ in range(n))
lst = [np.ones((10, 10)) for _ in range(n)]
self.assertTrue(util.all_array_equal(gen))
self.assertTrue(util.all_array_equal(lst))
gen = (np.arange(9).reshape(3, 3) + i for i in range(n))
lst = [np.arange(9).reshape(3, 3) + i for i in range(n)]
self.assertFalse(util.all_array_equal(gen))
self.assertFalse(util.all_array_equal(lst))
def test_concatenate_4_spin_echos(self):
"""Concatenate four Spin Echos with a random one having a filter
function
"""
tau = 1
tau_pi = 1e-4
omega = np.logspace(-2, 1, 200)
n = 1
H_c_SE, dt_SE = testutil.generate_dd_hamiltonian(n, tau=tau,
tau_pi=tau_pi,
dd_type='cpmg')
H_n_SE = [[util.paulis[3], np.ones_like(dt_SE)]]
SE = [ff.PulseSequence(H_c_SE, H_n_SE, dt_SE) for _ in range(4)]
H_c_CPMG, dt_CPMG = testutil.generate_dd_hamiltonian(4*n, tau=4*tau,
tau_pi=tau_pi,
dd_type='cpmg')
H_n_CPMG = [[util.paulis[3], np.ones_like(dt_CPMG)]]
CPMG = ff.PulseSequence(H_c_CPMG, H_n_CPMG, dt_CPMG)
SE[rng.randint(0, len(SE)-1)].cache_filter_function(omega)
CPMG.cache_filter_function(omega)
CPMG_concat_1 = ff.concatenate(SE)
# Clean up so that we start from one SE with cached filter_function again
for se in SE:
se.cleanup('all')
SE[rng.randint(0, len(SE)-1)].cache_filter_function(omega)
CPMG_concat_2 = SE[0] @ SE[1] @ SE[2] @ SE[3]
self.assertEqual(CPMG, CPMG_concat_1)
self.assertEqual(CPMG, CPMG_concat_2)
self.assertArrayAlmostEqual(CPMG_concat_1._filter_function,
CPMG._filter_function, rtol=1e-10)
self.assertArrayAlmostEqual(CPMG_concat_2._filter_function,
CPMG._filter_function, rtol=1e-10)
def test_oper_equiv(self):
with self.assertRaises(ValueError):
util.oper_equiv(*[np.ones((1, 2, 3))] * 2)
for d in rng.randint(2, 10, (5, )):
psi = rng.standard_normal((d, 1)) + 1j * rng.standard_normal(
(d, 1))
U = testutil.rand_herm(d).squeeze()
phase = rng.standard_normal()
result = util.oper_equiv(psi, psi * np.exp(1j * phase))
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], phase, places=5)
result = util.oper_equiv(psi * np.exp(1j * phase), psi)
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], -phase, places=5)
psi /= np.linalg.norm(psi, ord=2)
result = util.oper_equiv(psi,
psi * np.exp(1j * phase),
normalized=True,
eps=1e-13)
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], phase, places=5)
result = util.oper_equiv(psi, psi + 1)
self.assertFalse(result[0])
result = util.oper_equiv(U, U * np.exp(1j * phase))
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], phase, places=5)
result = util.oper_equiv(U * np.exp(1j * phase), U)
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], -phase, places=5)
U /= np.sqrt(util.dot_HS(U, U))
result = util.oper_equiv(U,
U * np.exp(1j * phase),
normalized=True,
eps=1e-10)
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], phase)
result = util.oper_equiv(U, U + 1)
self.assertFalse(result[0])
def test_dot_HS(self):
for d in rng.randint(2, 10, (5, )):
U = qutip.rand_herm(d)
V = qutip.rand_herm(d)
self.assertArrayAlmostEqual(util.dot_HS(U, V), (U.dag() * V).tr())
U = qutip.rand_unitary(d)
self.assertEqual(util.dot_HS(U, U), d)
self.assertEqual(util.dot_HS(U, U + 1e-14, eps=1e-10), d)
self.assertArrayAlmostEqual(util.dot_HS(U, V), (U.dag() * V).tr())
U = qutip.rand_unitary(d)
self.assertEqual(util.dot_HS(U, U), d)
self.assertEqual(util.dot_HS(U, U + 1e-14, eps=1e-10), d)
def test_infidelity_convergence(self):
omega = {
'omega_IR': 0,
'omega_UV': 2,
'spacing': 'linear',
'n_min': 10,
'n_max': 50,
'n_points': 4
}
def spectrum(omega):
return omega**0
simple_pulse = testutil.rand_pulse_sequence(2, 1, 1, 1)
complicated_pulse = testutil.rand_pulse_sequence(2, 100, 3, 3)
with self.assertRaises(TypeError):
n, infids = ff.infidelity(simple_pulse,
spectrum, [],
test_convergence=True)
with self.assertRaises(TypeError):
n, infids = ff.infidelity(simple_pulse, [1, 2, 3],
dict(spacing='foobar'),
test_convergence=True)
with self.assertRaises(ValueError):
n, infids = ff.infidelity(simple_pulse,
spectrum,
dict(spacing='foobar'),
test_convergence=True)
# Test with default args
n, infids = ff.infidelity(simple_pulse,
spectrum, {},
test_convergence=True)
# Test with non-default args
identifiers = rng.choice(complicated_pulse.n_oper_identifiers,
rng.randint(1, 4))
n, infids = ff.infidelity(complicated_pulse,
spectrum,
omega,
test_convergence=True,
n_oper_identifiers=identifiers)
def test_basis_generation_from_partial_random(self):
""""Generate complete basis from partial elements of a random basis"""
# Do 25 test runs with random elements from a random basis in
# (2 ... 8) dimensions
for _ in range(25):
d = rng.randint(2, 7)
# Get a random traceless hermitian operator
oper = testutil.rand_herm_traceless(d)
# ... and build a basis from it
b = ff.Basis(oper)
self.assertTrue(b.isorthonorm)
self.assertTrue(b.isherm)
self.assertTrue(b.istraceless)
self.assertTrue(b.iscomplete)
# Choose random elements from that basis and generate a new basis
# from it
inds = [i for i in range(d**2)]
tup = tuple(
inds.pop(rng.randint(0, len(inds)))
for _ in range(rng.randint(1, d**2)))
elems = b[tup, ...]
basis = ff.Basis(elems)
self.assertTrue(basis.isorthonorm)
self.assertTrue(basis.isherm)
self.assertTrue(basis.istraceless)
self.assertTrue(basis.iscomplete)
self.assertTrue(all(elem in basis for elem in elems))
# Test runs with non-traceless opers
for _ in range(25):
d = rng.randint(2, 7)
# Get a random hermitian operator
oper = testutil.rand_herm(d)
# ... and build a basis from it
b = ff.Basis(oper)
self.assertTrue(b.isorthonorm)
self.assertTrue(b.isherm)
self.assertFalse(b.istraceless)
self.assertTrue(b.iscomplete)
# Choose random elements from that basis and generate a new basis
# from it
inds = [i for i in range(d**2)]
tup = tuple(
inds.pop(rng.randint(0, len(inds)))
for _ in range(rng.randint(1, d**2)))
elems = b[tup, ...]
basis = ff.Basis(elems)
self.assertTrue(basis.isorthonorm)
self.assertTrue(basis.isherm)
self.assertFalse(basis.istraceless)
self.assertTrue(basis.iscomplete)
self.assertTrue(all(elem in basis for elem in elems))
def test_plot_pulse_train(self):
# Call with default args
fig, ax, leg = plotting.plot_pulse_train(simple_pulse)
# Call with no axes but figure
fig = plt.figure()
fig, ax, leg = plotting.plot_pulse_train(simple_pulse, fig=fig)
# Call with axes but no figure
fig, ax, leg = plotting.plot_pulse_train(simple_pulse, axes=ax)
# Call with custom args
c_oper_identifiers = sample(
complicated_pulse.c_oper_identifiers.tolist(), rng.randint(2, 4))
fig, ax = plt.subplots()
fig, ax, leg = plotting.plot_pulse_train(complicated_pulse,
c_oper_identifiers,
fig=fig,
axes=ax)
# invalid identifier
with self.assertRaises(ValueError):
plotting.plot_pulse_train(complicated_pulse,
c_oper_identifiers=['foo'],
fig=fig,
axes=ax)
# Test various keyword args for matplotlib
plot_kw = {'linewidth': 1}
subplot_kw = {'facecolor': 'r'}
gridspec_kw = {'hspace': 0.2, 'wspace': 0.1}
figure_kw = {'num': 1}
fig, ax, leg = plotting.plot_pulse_train(simple_pulse,
plot_kw=plot_kw,
subplot_kw=subplot_kw,
gridspec_kw=gridspec_kw,
**figure_kw)
plt.close('all')
def test_oper_equiv(self):
self.assertFalse(
util.oper_equiv(qutip.rand_ket(2), qutip.rand_dm(2))[0])
for d in rng.randint(2, 10, (5, )):
psi = qutip.rand_ket(d)
U = qutip.rand_dm(d)
phase = rng.standard_normal()
result = util.oper_equiv(psi, psi * np.exp(1j * phase))
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], phase, places=5)
result = util.oper_equiv(psi * np.exp(1j * phase), psi)
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], -phase, places=5)
result = util.oper_equiv(U, U * np.exp(1j * phase))
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], phase, places=5)
result = util.oper_equiv(U * np.exp(1j * phase), U)
self.assertTrue(result[0])
self.assertAlmostEqual(result[1], -phase, places=5)
def test_pulse_sequence_constructor(self):
"""Test constructing a PulseSequence."""
base_pulse = testutil.rand_pulse_sequence(2, 5, 3, 3)
H_c = list(zip(base_pulse.c_opers, base_pulse.c_coeffs,
base_pulse.c_oper_identifiers))
H_n = list(zip(base_pulse.n_opers, base_pulse.n_coeffs,
base_pulse.n_oper_identifiers))
dt = base_pulse.dt
for i in range(3):
H_c[i] = list(H_c[i])
H_n[i] = list(H_n[i])
with self.assertRaises(TypeError):
# Not enough positional arguments
ff.PulseSequence(H_c, H_n)
with self.assertRaises(TypeError):
# dt not a sequence
ff.PulseSequence(H_c, H_n, dt[0])
idx = rng.randint(0, 5)
with self.assertRaises(ValueError):
# negative dt
dt[idx] *= -1
ff.PulseSequence(H_c, H_n, dt)
dt[idx] *= -1
with self.assertRaises(ValueError):
# imaginary dt
dt = dt.astype(complex)
dt[idx] += 1j
ff.PulseSequence(H_c, H_n, dt)
dt = dt.real
basis = ff.Basis.pauli(1)
with self.assertRaises(ValueError):
# basis not Basis instance
ff.PulseSequence(H_c, H_n, dt, basis.view(np.ndarray))
with self.assertRaises(ValueError):
# basis not square
ff.PulseSequence(H_c, H_n, dt, basis.reshape(4, 1, 4))
with self.assertRaises(TypeError):
# Control Hamiltonian not list or tuple
ff.PulseSequence(np.array(H_c, dtype=object), H_n, dt)
with self.assertRaises(TypeError):
# Noise Hamiltonian not list or tuple
ff.PulseSequence(H_c, np.array(H_n, dtype=object), dt)
with self.assertRaises(TypeError):
# Element of control Hamiltonian not list or tuple
ff.PulseSequence([np.array(H_c[0], dtype=object)], H_n, dt)
with self.assertRaises(TypeError):
# Element of noise Hamiltonian not list or tuple
ff.PulseSequence(H_c, [np.array(H_n[0], dtype=object)], dt)
idx = rng.randint(0, 3)
with self.assertRaises(TypeError):
# Control Hamiltonian element not list or tuple
H_c[idx] = dict(H_c[idx])
ff.PulseSequence(H_c, H_n, dt)
H_c[idx] = list(H_c[idx])
with self.assertRaises(TypeError):
# Noise Hamiltonian element not list or tuple
H_n[idx] = dict(H_n[idx])
ff.PulseSequence(H_c, H_n, dt)
H_n[idx] = list(H_n[idx])
with self.assertRaises(TypeError):
# Control operators wrong type
oper = H_c[idx][0].copy()
H_c[idx][0] = dict(H_c[idx][0])
ff.PulseSequence(H_c, H_n, dt)
H_c[idx][0] = oper
with self.assertRaises(TypeError):
# Noise operators wrong type
oper = H_n[idx][0].copy()
H_n[idx][0] = dict(H_n[idx][0])
ff.PulseSequence(H_c, H_n, dt)
H_n[idx][0] = oper
with self.assertRaises(TypeError):
# Control coefficients wrong type
coeff = H_c[idx][1].copy()
H_c[idx][1] = H_c[idx][1][0]
ff.PulseSequence(H_c, H_n, dt)
H_c[idx][1] = coeff
with self.assertRaises(TypeError):
# Noise coefficients wrong type
coeff = H_n[idx][1].copy()
H_n[idx][1] = H_n[idx][1][0]
ff.PulseSequence(H_c, H_n, dt)
H_n[idx][1] = coeff
with self.assertRaises(ValueError):
# Control operators not 2d
for hc in H_c:
hc[0] = np.tile(hc[0], (rng.randint(2, 11), 1, 1))
ff.PulseSequence(H_c, H_n, dt)
for hc in H_c:
hc[0] = hc[0][0]
with self.assertRaises(ValueError):
# Noise operators not 2d
for hn in H_n:
hn[0] = np.tile(hn[0], (rng.randint(2, 11), 1, 1))
ff.PulseSequence(H_c, H_n, dt)
for hn in H_n:
hn[0] = hn[0][0]
with self.assertRaises(ValueError):
# Control operators not square
for hc in H_c:
hc[0] = np.tile(hc[0].reshape(1, 4), (2, 1))
ff.PulseSequence(H_c, H_n, dt)
for hc in H_c:
hc[0] = hc[0][0].reshape(2, 2)
with self.assertRaises(ValueError):
# Noise operators not square
for hn in H_n:
hn[0] = np.tile(hn[0].reshape(1, 4), (2, 1))
ff.PulseSequence(H_c, H_n, dt)
for hn in H_n:
hn[0] = hn[0][0].reshape(2, 2)
with self.assertRaises(ValueError):
# Control and noise operators not same dimension
for hn in H_n:
hn[0] = np.block([[hn[0], hn[0]], [hn[0], hn[0]]])
ff.PulseSequence(H_c, H_n, dt)
for hn in H_n:
hn[0] = hn[0][:2, :2]
with self.assertRaises(ValueError):
# Control identifiers not unique
identifier = H_c[idx][2]
H_c[idx][2] = H_c[idx-1][2]
ff.PulseSequence(H_c, H_n, dt)
H_c[idx][2] = identifier
with self.assertRaises(ValueError):
# Noise identifiers not unique
identifier = H_n[idx][2]
H_n[idx][2] = H_n[idx-1][2]
ff.PulseSequence(H_c, H_n, dt)
H_n[idx][2] = identifier
coeffs = []
with self.assertRaises(ValueError):
# Control coefficients not same length as dt
for hc in H_c:
coeffs.append(hc[1][-2:])
hc[1] = hc[1][:-2]
ff.PulseSequence(H_c, H_n, dt)
for i, c in enumerate(coeffs):
H_c[i][1] = np.concatenate((H_c[i][1], c))
with self.assertRaises(ValueError):
# Noise coefficients not same length as dt
for hn in H_n:
hn[1] = hn[1][:-2]
ff.PulseSequence(H_c, H_n, dt)
for i, c in enumerate(coeffs):
H_n[i][1] = np.concatenate((H_n[i][1], c))
pulse = ff.PulseSequence(H_c, H_n, dt)
# Hit __str__ and __repr__ methods
pulse
print(pulse)
# Hit __copy__ method
_ = copy(pulse)
# Fewer identifiers than opers
pulse_2 = ff.PulseSequence(
[[util.paulis[1], [1], 'X'],
[util.paulis[2], [1]]],
[[util.paulis[1], [1]],
[util.paulis[2], [1], 'Y']],
[1]
)
self.assertArrayEqual(pulse_2.c_oper_identifiers, ('A_1', 'X'))
self.assertArrayEqual(pulse_2.n_oper_identifiers, ('B_0', 'Y'))
def test_pulse_sequence_attributes(self):
"""Test attributes of single instance"""
X, Y, Z = util.paulis[1:]
n_dt = rng.randint(1, 10)
# trivial case
A = ff.PulseSequence([[X, rng.standard_normal(n_dt), 'X']],
[[Z, rng.standard_normal(n_dt), 'Z']],
np.abs(rng.standard_normal(n_dt)))
self.assertFalse(A == 1)
self.assertTrue(A != 1)
# different number of time steps
B = ff.PulseSequence([[X, rng.standard_normal(n_dt+1), 'X']],
[[Z, rng.standard_normal(n_dt+1), 'Z']],
np.abs(rng.standard_normal(n_dt+1)))
self.assertFalse(A == B)
self.assertTrue(A != B)
# different time steps
B = ff.PulseSequence(
list(zip(A.c_opers, A.c_coeffs, A.c_oper_identifiers)),
list(zip(A.n_opers, A.n_coeffs, A.n_oper_identifiers)),
np.abs(rng.standard_normal(n_dt))
)
self.assertFalse(A == B)
self.assertTrue(A != B)
# different control opers
B = ff.PulseSequence(
list(zip([Y], A.c_coeffs, A.c_oper_identifiers)),
list(zip(A.n_opers, A.n_coeffs, A.n_oper_identifiers)),
A.dt
)
self.assertFalse(A == B)
self.assertTrue(A != B)
# different control coeffs
B = ff.PulseSequence(
list(zip(A.c_opers, [rng.standard_normal(n_dt)],
A.c_oper_identifiers)),
list(zip(A.n_opers, A.n_coeffs, A.n_oper_identifiers)),
A.dt
)
self.assertFalse(A == B)
self.assertTrue(A != B)
# different noise opers
B = ff.PulseSequence(
list(zip(A.c_opers, A.c_coeffs, A.c_oper_identifiers)),
list(zip([Y], A.n_coeffs, A.n_oper_identifiers)),
A.dt
)
self.assertFalse(A == B)
self.assertTrue(A != B)
# different noise coeffs
B = ff.PulseSequence(
list(zip(A.c_opers, A.c_coeffs, A.c_oper_identifiers)),
list(zip(A.n_opers, [rng.standard_normal(n_dt)],
A.n_oper_identifiers)),
A.dt
)
self.assertFalse(A == B)
self.assertTrue(A != B)
# different control oper identifiers
B = ff.PulseSequence(
list(zip(A.c_opers, A.c_coeffs, ['foobar'])),
list(zip(A.n_opers, A.n_coeffs, A.n_oper_identifiers)),
A.dt
)
self.assertFalse(A == B)
self.assertTrue(A != B)
# different noise oper identifiers
B = ff.PulseSequence(
list(zip(A.c_opers, A.c_coeffs, A.c_oper_identifiers)),
list(zip(A.n_opers, A.n_coeffs, ['foobar'])),
A.dt
)
self.assertFalse(A == B)
self.assertTrue(A != B)
# different bases
elem = testutil.rand_herm_traceless(2)
B = ff.PulseSequence(
list(zip(A.c_opers, A.c_coeffs, A.c_oper_identifiers)),
list(zip(A.n_opers, A.n_coeffs, A.n_oper_identifiers)),
A.dt,
ff.Basis(elem)
)
self.assertFalse(A == B)
self.assertTrue(A != B)
# Test sparse operators for whatever reason
A = ff.PulseSequence([[util.paulis[1], [1]]],
[[sparse.COO.from_numpy(util.paulis[2]), [2]]],
[3])
B = ff.PulseSequence([[sparse.COO.from_numpy(util.paulis[1]), [1]]],
[[util.paulis[2], [2]]],
[3])
self.assertEqual(A, B)
# Test for attributes
for attr in A.__dict__.keys():
if not (attr.startswith('_') or '_' + attr in A.__dict__.keys()):
# not a cached attribute
with self.assertRaises(AttributeError):
_ = A.is_cached(attr)
else:
# set mock attribute at random
if rng.randint(0, 2):
setattr(A, attr, 'foo')
assertion = self.assertTrue
else:
setattr(A, attr, None)
assertion = self.assertFalse
assertion(A.is_cached(attr))
# Diagonalization attributes
A.diagonalize()
self.assertIsNotNone(A.eigvals)
self.assertIsNotNone(A.eigvecs)
self.assertIsNotNone(A.propagators)
A.cleanup('conservative')
self.assertIsNotNone(A.eigvals)
A.cleanup('conservative')
self.assertIsNotNone(A.eigvecs)
A.cleanup('conservative')
self.assertIsNotNone(A.propagators)
aliases = {'eigenvalues': '_eigvals',
'eigenvectors': '_eigvecs',
'total propagator': '_total_propagator',
'total propagator liouville': '_total_propagator_liouville',
'frequencies': '_omega',
'total phases': '_total_phases',
'filter function': '_filter_function',
'fidelity filter function': '_filter_function',
'generalized filter function': '_filter_function_gen',
'pulse correlation filter function': '_filter_function_pc',
'fidelity pulse correlation filter function': '_filter_function_pc',
'generalized pulse correlation filter function': '_filter_function_pc_gen',
'control matrix': '_control_matrix',
'pulse correlation control matrix': '_control_matrix_pc'}
for alias, attr in aliases.items():
# set mock attribute at random
if rng.randint(0, 2):
setattr(A, attr, 'foo')
assertion = self.assertTrue
else:
setattr(A, attr, None)
assertion = self.assertFalse
assertion(A.is_cached(alias))
assertion(A.is_cached(alias.upper()))
assertion(A.is_cached(alias.replace(' ', '_')))
A.cleanup('all')
# Test cleanup
C = ff.concatenate((A, A), calc_pulse_correlation_FF=True,
which='generalized',
omega=util.get_sample_frequencies(A))
C.diagonalize()
attrs = ['_eigvals', '_eigvecs', '_propagators']
for attr in attrs:
self.assertIsNotNone(getattr(C, attr))
C.cleanup()
for attr in attrs:
self.assertIsNone(getattr(C, attr))
C.diagonalize()
C.cache_control_matrix(A.omega)
attrs.extend(['_control_matrix', '_total_phases', '_total_propagator',
'_total_propagator_liouville'])
for attr in attrs:
self.assertIsNotNone(getattr(C, attr))
C.cleanup('greedy')
for attr in attrs:
self.assertIsNone(getattr(C, attr))
C.cache_filter_function(A.omega, which='generalized')
for attr in attrs + ['omega', '_filter_function_gen',
'_filter_function_pc_gen']:
self.assertIsNotNone(getattr(C, attr))
C = ff.concatenate((A, A), calc_pulse_correlation_FF=True,
which='fidelity', omega=A.omega)
C.diagonalize()
C.cache_filter_function(A.omega, which='fidelity')
attrs.extend(['omega', '_filter_function', '_filter_function_pc'])
for attr in attrs:
self.assertIsNotNone(getattr(C, attr))
C.cleanup('all')
for attr in attrs + ['_filter_function_gen',
'_filter_function_pc_gen']:
self.assertIsNone(getattr(C, attr))
C.cache_filter_function(A.omega, which='fidelity')
C.cleanup('frequency dependent')
freq_attrs = {'omega', '_control_matrix', '_filter_function',
'_filter_function_gen', '_filter_function_pc',
'_filter_function_pc_gen', '_total_phases'}
for attr in freq_attrs:
self.assertIsNone(getattr(C, attr))
for attr in set(attrs).difference(freq_attrs):
self.assertIsNotNone(getattr(C, attr))
def test_filter_function(self):
"""Test the filter function calculation and related methods"""
for d, n_dt in zip(rng.randint(2, 10, (3,)),
rng.randint(10, 200, (3,))):
total_pulse = testutil.rand_pulse_sequence(d, n_dt, 4, 6)
c_opers, c_coeffs = total_pulse.c_opers, total_pulse.c_coeffs
n_opers, n_coeffs = total_pulse.n_opers, total_pulse.n_coeffs
dt = total_pulse.dt
total_eigvals, total_eigvecs, _ = numeric.diagonalize(
np.einsum('il,ijk->ljk', c_coeffs, c_opers), total_pulse.dt
)
omega = util.get_sample_frequencies(total_pulse, n_samples=100)
# Try the progress bar
control_matrix = total_pulse.get_control_matrix(
omega, show_progressbar=True)
# Check that some attributes are cached
self.assertIsNotNone(total_pulse._total_phases)
self.assertIsNotNone(total_pulse._total_propagator)
self.assertIsNotNone(total_pulse._total_propagator_liouville)
# Calculate everything 'on foot'
pulses = [ff.PulseSequence(list(zip(c_opers, c_coeffs[:, i:i+1])),
list(zip(n_opers, n_coeffs[:, i:i+1])),
dt[i:i+1])
for i in range(n_dt)]
phases = np.empty((n_dt, len(omega)), dtype=complex)
L = np.empty((n_dt, d**2, d**2))
control_matrix_g = np.empty((n_dt, 6, d**2, len(omega)),
dtype=complex)
for g, pulse in enumerate(pulses):
phases[g] = np.exp(1j*total_pulse.t[g]*omega)
L[g] = ff.superoperator.liouville_representation(total_pulse.propagators[g],
total_pulse.basis)
control_matrix_g[g] = pulse.get_control_matrix(omega)
# Check that both methods of calculating the control are the same
control_matrix_from_atomic = numeric.calculate_control_matrix_from_atomic(
phases, control_matrix_g, L
)
control_matrix_from_scratch = numeric.calculate_control_matrix_from_scratch(
eigvals=total_eigvals,
eigvecs=total_eigvecs,
propagators=total_pulse.propagators,
omega=omega,
basis=total_pulse.basis,
n_opers=n_opers,
n_coeffs=n_coeffs,
dt=total_pulse.dt
)
self.assertArrayAlmostEqual(control_matrix, control_matrix_from_scratch)
# first column (identity element) always zero but susceptible to
# floating point error, increase atol
self.assertArrayAlmostEqual(control_matrix_from_scratch,
control_matrix_from_atomic,
atol=1e-13)
# Check if the filter functions for autocorrelated noise are real
filter_function = total_pulse.get_filter_function(omega)
self.assertTrue(np.isreal(
filter_function[np.eye(len(n_opers), dtype=bool)]
).all())
# Check switch between fidelity and generalized filter function
F_generalized = total_pulse.get_filter_function(
omega, which='generalized')
F_fidelity = total_pulse.get_filter_function(
omega, which='fidelity')
# Check that F_fidelity is correctly reduced from F_generalized
self.assertArrayAlmostEqual(F_fidelity,
F_generalized.trace(axis1=2, axis2=3))
# Hit getters again to check caching functionality
F_generalized = total_pulse.get_filter_function(
omega, which='generalized')
F_fidelity = total_pulse.get_filter_function(
omega, which='fidelity')
# Check that F_fidelity is correctly reduced from F_generalized
self.assertArrayAlmostEqual(F_fidelity,
F_generalized.trace(axis1=2, axis2=3))
# Different set of frequencies than cached
F_generalized = total_pulse.get_filter_function(
omega + 1, which='generalized')
F_fidelity = total_pulse.get_filter_function(
omega + 1, which='fidelity')
# Check that F_fidelity is correctly reduced from F_generalized
self.assertArrayAlmostEqual(F_fidelity,
F_generalized.trace(axis1=2, axis2=3))
def test_pulse_sequence_attributes_concat(self):
"""Test attributes of concatenated sequence."""
X, Y, Z = util.paulis[1:]
n_dt_1 = rng.randint(5, 11)
x_coeff_1 = rng.standard_normal(n_dt_1)
z_coeff_1 = rng.standard_normal(n_dt_1)
dt_1 = np.abs(rng.standard_normal(n_dt_1))
n_dt_2 = rng.randint(5, 11)
y_coeff_2 = rng.standard_normal(n_dt_2)
z_coeff_2 = rng.standard_normal(n_dt_2)
dt_2 = np.abs(rng.standard_normal(n_dt_2))
pulse_1 = ff.PulseSequence([[X, x_coeff_1]],
[[Z, z_coeff_1]],
dt_1)
pulse_2 = ff.PulseSequence([[Y, y_coeff_2]],
[[Z, z_coeff_2]],
dt_2)
pulse_3 = ff.PulseSequence([[Y, rng.standard_normal(2)],
[X, rng.standard_normal(2)]],
[[Z, np.abs(rng.standard_normal(2))]],
[1, 1])
# Concatenate with different noise opers
pulses = [testutil.rand_pulse_sequence(2, 1) for _ in range(2)]
pulses[0].omega = np.arange(10)
pulses[1].omega = np.arange(10)
newpulse = ff.concatenate(pulses, calc_filter_function=True)
self.assertTrue(newpulse.is_cached('filter function'))
pulse_12 = pulse_1 @ pulse_2
pulse_21 = pulse_2 @ pulse_1
with self.assertRaises(TypeError):
_ = pulse_1 @ rng.standard_normal((2, 2))
# Concatenate pulses with same operators but different labels
with self.assertRaises(ValueError):
pulse_1 @ pulse_3
# Test nbytes property
_ = pulse_1.nbytes
self.assertArrayEqual(pulse_12.dt, [*dt_1, *dt_2])
self.assertArrayEqual(pulse_21.dt, [*dt_2, *dt_1])
self.assertArrayEqual(pulse_12.c_opers, [X, Y])
self.assertArrayEqual(pulse_21.c_opers, [Y, X])
self.assertArrayEqual(pulse_12.c_oper_identifiers, ['A_0_0', 'A_0_1'])
self.assertArrayEqual(pulse_21.c_oper_identifiers, ['A_0_0', 'A_0_1'])
self.assertArrayEqual(pulse_12.c_coeffs,
[[*x_coeff_1, *np.zeros(n_dt_2)],
[*np.zeros(n_dt_1), *y_coeff_2]])
self.assertArrayEqual(pulse_21.c_coeffs,
[[*y_coeff_2, *np.zeros(n_dt_1)],
[*np.zeros(n_dt_2), *x_coeff_1]])
self.assertArrayEqual(pulse_12.n_opers, [Z])
self.assertArrayEqual(pulse_21.n_opers, [Z])
self.assertArrayEqual(pulse_12.n_oper_identifiers, ['B_0'])
self.assertArrayEqual(pulse_21.n_oper_identifiers, ['B_0'])
self.assertArrayEqual(pulse_12.n_coeffs, [[*z_coeff_1, *z_coeff_2]])
self.assertArrayEqual(pulse_21.n_coeffs, [[*z_coeff_2, *z_coeff_1]])
omega = np.linspace(-100, 100, 101)
pulses = (pulse_1, pulse_2, pulse_12, pulse_21)
for pulse in pulses:
self.assertIsNone(pulse._total_phases)
self.assertIsNone(pulse._total_propagator)
self.assertIsNone(pulse._total_propagator_liouville)
total_phases = pulse.get_total_phases(omega)
total_propagator = pulse.total_propagator
total_propagator_liouville = pulse.total_propagator_liouville
self.assertArrayEqual(total_phases, pulse._total_phases)
self.assertArrayEqual(total_propagator, pulse._total_propagator)
self.assertArrayEqual(total_propagator_liouville,
pulse._total_propagator_liouville)
# Test custom identifiers
letters = rng.choice(list(string.ascii_letters), size=(6, 5),
replace=False)
ids = [''.join(c) for c in letters[:3]]
labels = [''.join(c) for c in letters[3:]]
pulse = ff.PulseSequence(
list(zip([X, Y, Z], rng.standard_normal((3, 2)), ids, labels)),
list(zip([X, Y, Z], rng.standard_normal((3, 2)), ids, labels)),
[1, 1]
)
self.assertArrayEqual(pulse.c_oper_identifiers, sorted(ids))
self.assertArrayEqual(pulse.n_oper_identifiers, sorted(ids))
def test_pulse_correlation_filter_function(self):
"""
Test calculation of pulse correlation filter function and control
matrix.
"""
X, Y, Z = util.paulis[1:]
T = 1
omega = np.linspace(-2e1, 2e1, 250)
H_c, H_n, dt = dict(), dict(), dict()
H_c['X'] = [[X, [np.pi/2/T]]]
H_n['X'] = [[X, [1]],
[Y, [1]],
[Z, [1]]]
dt['X'] = [T]
H_c['Y'] = [[Y, [np.pi/4/T]]]
H_n['Y'] = [[X, [1]],
[Y, [1]],
[Z, [1]]]
dt['Y'] = [T]
n_nops = 3
# Check if an exception is raised if we want to calculate the PC-FF but
# one pulse has different frequencies
with self.assertRaises(ValueError):
pulses = dict()
for i, key in enumerate(('X', 'Y')):
pulses[key] = ff.PulseSequence(H_c[key], H_n[key], dt[key])
pulses[key].cache_filter_function(omega + i)
ff.concatenate([pulses['X'], pulses['Y']],
calc_pulse_correlation_FF=True)
# Get filter functions at same frequencies
[pulse.cache_filter_function(omega) for pulse in pulses.values()]
pulse_1 = pulses['X'] @ pulses['Y']
pulse_2 = ff.concatenate([pulses['X'], pulses['Y']],
calc_pulse_correlation_FF=True,
which='fidelity')
pulse_3 = ff.concatenate([pulses['X'], pulses['Y']],
calc_pulse_correlation_FF=True,
which='generalized')
self.assertTrue(pulse_2.is_cached('control_matrix_pc'))
self.assertTrue(pulse_2.is_cached('filter_function_pc'))
self.assertTrue(pulse_3.is_cached('control_matrix_pc'))
self.assertTrue(pulse_3.is_cached('filter_function_pc_gen'))
# Check if the filter functions on the diagonals are real
filter_function = pulse_2.get_pulse_correlation_filter_function()
diag_1 = np.eye(2, dtype=bool)
diag_2 = np.eye(3, dtype=bool)
self.assertTrue(np.isreal(filter_function[diag_1][:, diag_2]).all())
self.assertEqual(pulse_1, pulse_2)
self.assertEqual(pulse_2.get_pulse_correlation_filter_function().shape,
(2, 2, n_nops, n_nops, len(omega)))
self.assertArrayAlmostEqual(
pulse_1.get_filter_function(omega),
pulse_2.get_pulse_correlation_filter_function().sum((0, 1))
)
self.assertArrayAlmostEqual(pulse_1.get_filter_function(omega),
pulse_2._filter_function)
# Test the behavior of the pulse correlation control matrix
with self.assertRaises(ValueError):
# R wrong dimension
numeric.calculate_pulse_correlation_filter_function(
pulse_1._control_matrix)
with self.assertRaises(util.CalculationError):
# not calculated
pulse_1.get_pulse_correlation_control_matrix()
control_matrix_pc = pulse_2.get_pulse_correlation_control_matrix()
self.assertArrayEqual(
filter_function,
numeric.calculate_pulse_correlation_filter_function(
control_matrix_pc, 'fidelity'
)
)
control_matrix_pc = pulse_3.get_pulse_correlation_control_matrix()
filter_function = \
pulse_3.get_pulse_correlation_filter_function(which='fidelity')
self.assertArrayEqual(
filter_function,
numeric.calculate_pulse_correlation_filter_function(
control_matrix_pc, 'fidelity'
)
)
filter_function = \
pulse_3.get_pulse_correlation_filter_function(which='generalized')
self.assertArrayEqual(
filter_function,
numeric.calculate_pulse_correlation_filter_function(
control_matrix_pc, 'generalized'
)
)
# If for some reason filter_function_pc_xy is removed, check if
# recovered from control_matrix_pc
pulse_2._filter_function_pc = None
pulse_3._filter_function_pc_gen = None
control_matrix_pc = pulse_3.get_pulse_correlation_control_matrix()
filter_function = \
pulse_3.get_pulse_correlation_filter_function(which='fidelity')
self.assertArrayEqual(
filter_function,
numeric.calculate_pulse_correlation_filter_function(
control_matrix_pc, 'fidelity'
)
)
filter_function = \
pulse_3.get_pulse_correlation_filter_function(which='generalized')
self.assertArrayEqual(
filter_function,
numeric.calculate_pulse_correlation_filter_function(
control_matrix_pc, 'generalized'
)
)
spectrum = omega**0*1e-2
with self.assertRaises(util.CalculationError):
infid_1 = ff.infidelity(pulse_1, spectrum, omega,
which='correlations')
with self.assertRaises(ValueError):
infid_1 = ff.infidelity(pulse_1, spectrum, omega, which='foobar')
for _ in range(10):
n_nops = rng.randint(1, 4)
identifiers = sample(['B_0', 'B_1', 'B_2'], n_nops)
infid_X = ff.infidelity(pulses['X'], spectrum, omega,
which='total',
n_oper_identifiers=identifiers)
infid_Y = ff.infidelity(pulses['Y'], spectrum, omega,
which='total',
n_oper_identifiers=identifiers)
infid_1 = ff.infidelity(pulse_1, spectrum, omega, which='total',
n_oper_identifiers=identifiers)
infid_2 = ff.infidelity(pulse_2, spectrum, omega,
which='correlations',
n_oper_identifiers=identifiers)
self.assertAlmostEqual(infid_1.sum(), infid_2.sum())
self.assertArrayAlmostEqual(infid_X, infid_2[0, 0])
self.assertArrayAlmostEqual(infid_Y, infid_2[1, 1])
# Test function for correlated noise spectra
spectrum = np.array([[1e-4/omega**2, 1e-4*np.exp(-omega**2)],
[1e-4*np.exp(-omega**2), 1e-4/omega**2]])
infid_1 = ff.infidelity(pulse_1, spectrum, omega, which='total',
n_oper_identifiers=['B_0', 'B_2'])
infid_2 = ff.infidelity(pulse_2, spectrum, omega, which='correlations',
n_oper_identifiers=['B_0', 'B_2'])
self.assertAlmostEqual(infid_1.sum(), infid_2.sum())
self.assertArrayAlmostEqual(infid_1, infid_2.sum(axis=(0, 1)))
