def test_get_int_field(self, value, is_single_field, expected):
key = 'field'
field_map = _set_protomap_from_dict({})
struct_utils.set_int_field(field_map, key, value)
actual = struct_utils.get_int_field(field_map, key, is_single_field)
self.assertEqual(actual, expected)
# Test long handling in Python 2
if sys.version_info.major < 3:
field_map = _set_protomap_from_dict({})
struct_utils.set_int_field(field_map, key,
[long(v) for v in value])
actual = struct_utils.get_int_field(field_map, key,
is_single_field)
self.assertEqual(actual, expected)
def get_min_dp(variant_call):
"""Gets the 'MIN_DP' field of the VariantCall."""
return struct_utils.get_int_field(variant_call.info,
'MIN_DP',
is_single_field=True)
def get_min_dp(variant_call):
"""Gets the 'MIN_DP' field of the VariantCall."""
return struct_utils.get_int_field(
variant_call.info, 'MIN_DP', is_single_field=True)
def test_get_int_field(self, value, is_single_field, expected):
key = 'field'
field_map = _set_protomap_from_dict({})
struct_utils.set_int_field(field_map, key, value)
actual = struct_utils.get_int_field(field_map, key, is_single_field)
self.assertEqual(actual, expected)