def main():
gt = GlobalTimers.get()
gt.start("toast_ground_schedule")
run_scheduler()
gt.stop_all()
gt.report()
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_planck_reduce (total)")
mpiworld, procs, rank, comm = get_comm()
# This is the 2-level toast communicator. By default,
# there is just one group which spans MPI_COMM_WORLD.
comm = toast.Comm()
if comm.comm_world.rank == 0:
print(
"Running with {} processes at {}".format(
procs, str(datetime.datetime.now())
)
)
parser = argparse.ArgumentParser(
description="Simple on-the-fly signal convolution + MADAM Mapmaking",
fromfile_prefix_chars="@",
)
parser.add_argument("--lmax", required=True, type=np.int, help="Simulation lmax")
parser.add_argument(
"--fwhm", required=True, type=np.float, help="Sky fwhm [arcmin] to deconvolve"
)
parser.add_argument("--beammmax", required=True, type=np.int, help="Beam mmax")
parser.add_argument("--order", default=11, type=np.int, help="Iteration order")
parser.add_argument(
"--pxx",
required=False,
default=False,
action="store_true",
help="Beams are in Pxx frame, not Dxx",
)
parser.add_argument(
"--normalize",
required=False,
default=False,
action="store_true",
help="Normalize the beams",
)
parser.add_argument(
"--skyfile",
required=True,
help="Path to sky alm files. Tag DETECTOR will be "
"replaced with detector name.",
)
parser.add_argument(
"--remove_monopole",
required=False,
default=False,
action="store_true",
help="Remove the sky monopole before convolution",
)
parser.add_argument(
"--remove_dipole",
required=False,
default=False,
action="store_true",
help="Remove the sky dipole before convolution",
)
parser.add_argument(
"--beamfile",
required=True,
help="Path to beam alm files. Tag DETECTOR will be "
"replaced with detector name.",
)
parser.add_argument("--rimo", required=True, help="RIMO file")
parser.add_argument("--freq", required=True, type=np.int, help="Frequency")
parser.add_argument(
"--dets", required=False, default=None, help="Detector list (comma separated)"
)
parser.add_argument(
"--effdir", required=True, help="Input Exchange Format File directory"
)
parser.add_argument(
"--effdir_pntg",
required=False,
help="Input Exchange Format File directory " "for pointing",
)
parser.add_argument(
"--effdir_out", required=False, help="Output directory for convolved TOD"
)
parser.add_argument(
"--obtmask", required=False, default=1, type=np.int, help="OBT flag mask"
)
parser.add_argument(
"--flagmask", required=False, default=1, type=np.int, help="Quality flag mask"
)
parser.add_argument("--ringdb", required=True, help="Ring DB file")
parser.add_argument(
"--odfirst", required=False, default=None, type=np.int, help="First OD to use"
)
parser.add_argument(
"--odlast", required=False, default=None, type=np.int, help="Last OD to use"
)
parser.add_argument(
"--ringfirst",
required=False,
default=None,
type=np.int,
help="First ring to use",
)
parser.add_argument(
"--ringlast", required=False, default=None, type=np.int, help="Last ring to use"
)
parser.add_argument(
"--obtfirst",
required=False,
default=None,
type=np.float,
help="First OBT to use",
)
parser.add_argument(
"--obtlast", required=False, default=None, type=np.float, help="Last OBT to use"
)
parser.add_argument("--madam_prefix", required=False, help="map prefix")
parser.add_argument(
"--madampar", required=False, default=None, help="Madam parameter file"
)
parser.add_argument(
"--obtmask_madam", required=False, type=np.int, help="OBT flag mask for Madam"
)
parser.add_argument(
"--flagmask_madam",
required=False,
type=np.int,
help="Quality flag mask for Madam",
)
parser.add_argument(
"--skip_madam",
required=False,
default=False,
action="store_true",
help="Do not run Madam on the convolved timelines",
)
parser.add_argument("--out", required=False, default=".", help="Output directory")
try:
args = parser.parse_args()
except SystemExit:
sys.exit(0)
timer = Timer()
timer.start()
odrange = None
if args.odfirst is not None and args.odlast is not None:
odrange = (args.odfirst, args.odlast)
ringrange = None
if args.ringfirst is not None and args.ringlast is not None:
ringrange = (args.ringfirst, args.ringlast)
obtrange = None
if args.obtfirst is not None and args.obtlast is not None:
obtrange = (args.obtfirst, args.obtlast)
detectors = None
if args.dets is not None:
detectors = re.split(",", args.dets)
# This is the distributed data, consisting of one or
# more observations, each distributed over a communicator.
data = toast.Data(comm)
# Ensure output directory exists
if not os.path.isdir(args.out) and comm.comm_world.rank == 0:
os.makedirs(args.out)
# Read in madam parameter file
# Allow more than one entry, gather into a list
repeated_keys = ["detset", "detset_nopol", "survey"]
pars = {}
if comm.comm_world.rank == 0:
pars["kfirst"] = False
pars["temperature_only"] = True
pars["base_first"] = 60.0
pars["nside_map"] = 512
pars["nside_cross"] = 512
pars["nside_submap"] = 16
pars["write_map"] = False
pars["write_binmap"] = True
pars["write_matrix"] = False
pars["write_wcov"] = False
pars["write_hits"] = True
pars["kfilter"] = False
pars["info"] = 3
if args.madampar:
pat = re.compile(r"\s*(\S+)\s*=\s*(\S+(\s+\S+)*)\s*")
comment = re.compile(r"^#.*")
with open(args.madampar, "r") as f:
for line in f:
if not comment.match(line):
result = pat.match(line)
if result:
key, value = result.group(1), result.group(2)
if key in repeated_keys:
if key not in pars:
pars[key] = []
pars[key].append(value)
else:
pars[key] = value
# Command line parameters override the ones in the madam parameter file
if "file_root" not in pars:
pars["file_root"] = "madam"
if args.madam_prefix is not None:
pars["file_root"] = args.madam_prefix
sfreq = "{:03}".format(args.freq)
if sfreq not in pars["file_root"]:
pars["file_root"] += "_" + sfreq
try:
fsample = {30: 32.51, 44: 46.55, 70: 78.77}[args.freq]
except Exception:
fsample = 180.3737
pars["fsample"] = fsample
pars["path_output"] = args.out
print("All parameters:")
print(args, flush=True)
pars = comm.comm_world.bcast(pars, root=0)
memreport("after parameters", MPI.COMM_WORLD)
# madam only supports a single observation. Normally
# we would have multiple observations with some subset
# assigned to each process group.
# create the TOD for this observation
tod = tp.Exchange(
comm=comm.comm_group,
detectors=detectors,
ringdb=args.ringdb,
effdir_in=args.effdir,
effdir_pntg=args.effdir_pntg,
obt_range=obtrange,
ring_range=ringrange,
od_range=odrange,
freq=args.freq,
RIMO=args.rimo,
obtmask=args.obtmask,
flagmask=args.flagmask,
do_eff_cache=False,
)
# normally we would get the intervals from somewhere else, but since
# the Exchange TOD already had to get that information, we can
# get it from there.
ob = {}
ob["name"] = "mission"
ob["id"] = 0
ob["tod"] = tod
ob["intervals"] = tod.valid_intervals
ob["baselines"] = None
ob["noise"] = tod.noise
# Add the bare minimum focal plane information for the conviqt operator
focalplane = {}
for det in tod.detectors:
if args.pxx:
# Beam is in the polarization basis.
# No extra rotations are needed
psipol = tod.rimo[det].psi_pol
else:
# Beam is in the detector basis. Convolver needs to remove
# the last rotation into the polarization sensitive frame.
psipol = tod.rimo[det].psi_uv + tod.rimo[det].psi_pol
focalplane[det] = {
"pol_leakage" : tod.rimo[det].epsilon,
"pol_angle_deg" : psipol,
}
ob["focalplane"] = focalplane
data.obs.append(ob)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Metadata queries")
loader = tp.OpInputPlanck(
commonflags_name="common_flags", flags_name="flags", margin=0
)
loader.exec(data)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Data read and cache")
tod.cache.report()
memreport("after loading", mpiworld)
# make a planck Healpix pointing matrix
mode = "IQU"
if pars["temperature_only"] == "T":
mode = "I"
nside = int(pars["nside_map"])
pointing = tp.OpPointingPlanck(
nside=nside,
mode=mode,
RIMO=tod.RIMO,
margin=0,
apply_flags=False,
keep_vel=False,
keep_pos=False,
keep_phase=False,
keep_quats=True,
)
pointing.exec(data)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Pointing Matrix took, mode = {}".format(mode))
memreport("after pointing", mpiworld)
# simulate the TOD by convolving the sky with the beams
if comm.comm_world.rank == 0:
print("Convolving TOD", flush=True)
for pattern in args.beamfile.split(","):
skyfiles = {}
beamfiles = {}
for det in tod.detectors:
freq = "{:03}".format(tp.utilities.det2freq(det))
if "LFI" in det:
psmdet = "{}_{}".format(freq, det[3:])
if det.endswith("M"):
arm = "y"
else:
arm = "x"
graspdet = "{}_{}_{}".format(freq[1:], det[3:5], arm)
else:
psmdet = det.replace("-", "_")
graspdet = det
skyfile = (
args.skyfile.replace("FREQ", freq)
.replace("PSMDETECTOR", psmdet)
.replace("DETECTOR", det)
)
skyfiles[det] = skyfile
beamfile = pattern.replace("GRASPDETECTOR", graspdet).replace(
"DETECTOR", det
)
beamfiles[det] = beamfile
if comm.comm_world.rank == 0:
print("Convolving {} with {}".format(skyfile, beamfile), flush=True)
conviqt = OpSimConviqt(
comm.comm_world,
skyfiles,
beamfiles,
lmax=args.lmax,
beammmax=args.beammmax,
pol=True,
fwhm=args.fwhm,
order=args.order,
calibrate=True,
dxx=True,
out="conviqt_tod",
apply_flags=False,
remove_monopole=args.remove_monopole,
remove_dipole=args.remove_dipole,
verbosity=1,
normalize_beam=args.normalize,
)
conviqt.exec(data)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Convolution")
memreport("after conviqt", mpiworld)
if args.effdir_out is not None:
if comm.comm_world.rank == 0:
print("Writing TOD", flush=True)
tod.set_effdir_out(args.effdir_out, None)
writer = tp.OpOutputPlanck(
signal_name="conviqt_tod",
flags_name="flags",
commonflags_name="common_flags",
)
writer.exec(data)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Conviqt output")
memreport("after writing", mpiworld)
# for now, we pass in the noise weights from the RIMO.
detweights = {}
for d in tod.detectors:
net = tod.rimo[d].net
fsample = tod.rimo[d].fsample
detweights[d] = 1.0 / (fsample * net * net)
if not args.skip_madam:
if comm.comm_world.rank == 0:
print("Calling Madam", flush=True)
try:
if args.obtmask_madam is None:
obtmask = args.obtmask
else:
obtmask = args.obtmask_madam
if args.flagmask_madam is None:
flagmask = args.flagmask
else:
flagmask = args.flagmask_madam
madam = OpMadam(
params=pars,
detweights=detweights,
name="conviqt_tod",
flag_name="flags",
purge=True,
name_out="madam_tod",
common_flag_mask=obtmask,
flag_mask=flagmask,
)
except Exception as e:
raise Exception(
"{:4} : ERROR: failed to initialize Madam: {}".format(
comm.comm_world.rank, e
)
)
madam.exec(data)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Madam took {:.3f} s")
memreport("after madam", mpiworld)
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if comm.world_rank == 0:
out = os.path.join(args.out, "timing")
dump_timing(alltimers, out)
timer.stop()
timer.report("Gather and dump timing info")
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_ground_sim (total)")
mpiworld, procs, rank, comm = get_comm()
args, comm = parse_arguments(comm)
# Initialize madam parameters
madampars = setup_madam(args)
# Load and broadcast the schedule file
schedule = load_schedule(args, comm)[0]
# load or simulate the focalplane
detweights = load_focalplane(args, comm, schedule)
# Create the TOAST data object to match the schedule. This will
# include simulating the boresight pointing.
data = create_observations(args, comm, schedule)
# Expand boresight quaternions into detector pointing weights and
# pixel numbers
expand_pointing(args, comm, data)
# Scan input map
signalname = scan_sky_signal(args, comm, data, "signal")
# Simulate noise
if signalname is None:
signalname = "signal"
mc = 0
simulate_noise(args, comm, data, mc, signalname)
# Set up objects to take copies of the TOD at appropriate times
signalname_madam, sigcopy_madam, sigclear = setup_sigcopy(
args, comm, signalname)
npp, zmap = init_binner(args, comm, data, detweights)
output_tidas(args, comm, data, signalname)
outpath = setup_output(args, comm)
# Make a copy of the signal for Madam
copy_signal_madam(args, comm, data, sigcopy_madam)
# Bin unprocessed signal for reference
apply_binner(args, comm, data, npp, zmap, detweights, outpath, signalname)
if args.apply_polyfilter or args.apply_groundfilter:
# Filter signal
apply_polyfilter(args, comm, data, signalname)
apply_groundfilter(args, comm, data, signalname)
# Bin the filtered signal
apply_binner(
args,
comm,
data,
npp,
zmap,
detweights,
outpath,
signalname,
prefix="filtered",
)
data.obs[0]["tod"].cache.report()
clear_signal(args, comm, data, sigclear)
data.obs[0]["tod"].cache.report()
# Now run Madam on the unprocessed copy of the signal
if args.use_madam:
apply_madam(args, comm, data, madampars, outpath, detweights,
signalname_madam)
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if comm.world_rank == 0:
out = os.path.join(args.outdir, "timing")
dump_timing(alltimers, out)
timer.report_clear("Gather and dump timing info")
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_planck_reduce (total)")
mpiworld, procs, rank, comm = get_comm()
if comm.world_rank == 0:
print("Running with {} processes at {}".format(
procs, str(datetime.datetime.now())))
parser = argparse.ArgumentParser(description='Simple MADAM Mapmaking',
fromfile_prefix_chars='@')
parser.add_argument('--skip_madam',
dest='skip_madam',
default=False,
action='store_true',
help='D not make maps with Madam.')
parser.add_argument('--skip_noise',
dest='skip_noise',
default=False,
action='store_true',
help='Do not add simulated noise to the TOD.')
parser.add_argument('--rimo', required=True, help='RIMO file')
parser.add_argument('--freq', required=True, type=np.int, help='Frequency')
parser.add_argument('--debug',
dest='debug',
default=False,
action='store_true',
help='Write data distribution info to file')
parser.add_argument('--dets',
required=False,
default=None,
help='Detector list (comma separated)')
parser.add_argument('--effdir',
required=True,
help='Input Exchange Format File directory')
parser.add_argument('--effdir2',
required=False,
help='Additional input Exchange Format File directory')
parser.add_argument('--effdir_pntg',
required=False,
help='Input Exchange Format File directory for '
'pointing')
parser.add_argument('--effdir_fsl',
required=False,
help='Input Exchange Format File directory for '
'straylight')
parser.add_argument('--obtmask',
required=False,
default=1,
type=np.int,
help='OBT flag mask')
parser.add_argument('--flagmask',
required=False,
default=1,
type=np.int,
help='Quality flag mask')
parser.add_argument('--pntflagmask',
required=False,
default=0,
type=np.int,
help='Which OBT flag bits to raise for HCM maneuvers')
parser.add_argument('--bad_intervals',
required=False,
help='Path to bad interval file.')
parser.add_argument('--ringdb', required=True, help='Ring DB file')
parser.add_argument('--odfirst',
required=False,
default=None,
help='First OD to use')
parser.add_argument('--odlast',
required=False,
default=None,
help='Last OD to use')
parser.add_argument('--ringfirst',
required=False,
default=None,
help='First ring to use')
parser.add_argument('--ringlast',
required=False,
default=None,
help='Last ring to use')
parser.add_argument('--obtfirst',
required=False,
default=None,
help='First OBT to use')
parser.add_argument('--obtlast',
required=False,
default=None,
help='Last OBT to use')
parser.add_argument('--read_eff',
dest='read_eff',
default=False,
action='store_true',
help='Read and co-add the signal from effdir')
parser.add_argument('--decalibrate',
required=False,
help='Path to calibration file to decalibrate with. '
'You can use python string formatting, assuming '
'.format(mc)')
parser.add_argument('--calibrate',
required=False,
help='Path to calibration file to calibrate with. '
'You can use python string formatting, assuming '
'.format(mc)')
parser.add_argument('--madampar',
required=False,
default=None,
help='Madam parameter file')
parser.add_argument('--nside',
required=False,
default=None,
type=np.int,
help='Madam resolution')
parser.add_argument('--out',
required=False,
default='.',
help='Output directory')
parser.add_argument('--madam_prefix', required=False, help='map prefix')
parser.add_argument('--make_rings',
dest='make_rings',
default=False,
action='store_true',
help='Compile ringsets.')
parser.add_argument('--nside_ring',
required=False,
default=128,
type=np.int,
help='Ringset resolution')
parser.add_argument('--ring_root',
required=False,
default='ringset',
help='Root filename for ringsets (setting to empty '
'disables ringset output).')
parser.add_argument('--MC_start',
required=False,
default=0,
type=np.int,
help='First Monte Carlo noise realization')
parser.add_argument('--MC_count',
required=False,
default=1,
type=np.int,
help='Number of Monte Carlo noise realizations')
# noise parameters
parser.add_argument('--noisefile',
required=False,
default='RIMO',
help='Path to noise PSD files for noise filter. '
'Tag DETECTOR will be replaced with detector name.')
parser.add_argument('--noisefile_simu',
required=False,
default='RIMO',
help='Path to noise PSD files for noise simulation. '
'Tag DETECTOR will be replaced with detector name.')
# Dipole parameters
dipogroup = parser.add_mutually_exclusive_group()
dipogroup.add_argument('--dipole',
dest='dipole',
required=False,
default=False,
action='store_true',
help='Simulate dipole')
dipogroup.add_argument('--solsys_dipole',
dest='solsys_dipole',
required=False,
default=False,
action='store_true',
help='Simulate solar system dipole')
dipogroup.add_argument('--orbital_dipole',
dest='orbital_dipole',
required=False,
default=False,
action='store_true',
help='Simulate orbital dipole')
dipo_parameters_group = parser.add_argument_group('dipole_parameters')
dipo_parameters_group.add_argument(
'--solsys_speed',
required=False,
type=np.float,
default=DEFAULT_PARAMETERS["solsys_speed"],
help='Solar system speed wrt. CMB rest frame in km/s. Default is '
'Planck 2015 best fit value')
dipo_parameters_group.add_argument(
'--solsys_glon',
required=False,
type=np.float,
default=DEFAULT_PARAMETERS["solsys_glon"],
help='Solar system velocity direction longitude in degrees')
dipo_parameters_group.add_argument(
'--solsys_glat',
required=False,
type=np.float,
default=DEFAULT_PARAMETERS["solsys_glat"],
help='Solar system velocity direction latitude in degrees')
try:
args = parser.parse_args()
except SystemExit:
sys.exit(0)
if comm.world_rank == 0:
print('All parameters:')
print(args, flush=True)
if args.MC_count < 1:
raise RuntimeError('MC_count = {} < 1. Nothing done.'
''.format(args.MC_count))
timer = Timer()
timer.start()
nrange = 1
odranges = None
if args.odfirst is not None and args.odlast is not None:
odranges = []
firsts = [int(i) for i in str(args.odfirst).split(',')]
lasts = [int(i) for i in str(args.odlast).split(',')]
for odfirst, odlast in zip(firsts, lasts):
odranges.append((odfirst, odlast))
nrange = len(odranges)
ringranges = None
if args.ringfirst is not None and args.ringlast is not None:
ringranges = []
firsts = [int(i) for i in str(args.ringfirst).split(',')]
lasts = [int(i) for i in str(args.ringlast).split(',')]
for ringfirst, ringlast in zip(firsts, lasts):
ringranges.append((ringfirst, ringlast))
nrange = len(ringranges)
obtranges = None
if args.obtfirst is not None and args.obtlast is not None:
obtranges = []
firsts = [float(i) for i in str(args.obtfirst).split(',')]
lasts = [float(i) for i in str(args.obtlast).split(',')]
for obtfirst, obtlast in zip(firsts, lasts):
obtranges.append((obtfirst, obtlast))
nrange = len(obtranges)
if odranges is None:
odranges = [None] * nrange
if ringranges is None:
ringranges = [None] * nrange
if obtranges is None:
obtranges = [None] * nrange
detectors = None
if args.dets is not None:
detectors = re.split(',', args.dets)
# create the TOD for this observation
if args.noisefile != 'RIMO' or args.noisefile_simu != 'RIMO':
do_eff_cache = True
else:
do_eff_cache = False
tods = []
for obtrange, ringrange, odrange in zip(obtranges, ringranges, odranges):
# create the TOD for this observation
tods.append(
tp.Exchange(comm=comm.comm_group,
detectors=detectors,
ringdb=args.ringdb,
effdir_in=args.effdir,
extra_effdirs=[args.effdir2, args.effdir_fsl],
effdir_pntg=args.effdir_pntg,
obt_range=obtrange,
ring_range=ringrange,
od_range=odrange,
freq=args.freq,
RIMO=args.rimo,
obtmask=args.obtmask,
flagmask=args.flagmask,
pntflagmask=args.pntflagmask,
do_eff_cache=do_eff_cache))
# Make output directory
if not os.path.isdir(args.out) and comm.world_rank == 0:
os.makedirs(args.out)
# Read in madam parameter file
# Allow more than one entry, gather into a list
repeated_keys = ['detset', 'detset_nopol', 'survey']
pars = {}
if comm.world_rank == 0:
pars['kfirst'] = False
pars['temperature_only'] = True
pars['base_first'] = 60.0
pars['nside_submap'] = 16
pars['write_map'] = False
pars['write_binmap'] = True
pars['write_matrix'] = False
pars['write_wcov'] = False
pars['write_hits'] = True
pars['kfilter'] = False
pars['info'] = 3
if args.madampar:
pat = re.compile(r'\s*(\S+)\s*=\s*(\S+(\s+\S+)*)\s*')
comment = re.compile(r'^#.*')
with open(args.madampar, 'r') as f:
for line in f:
if not comment.match(line):
result = pat.match(line)
if result:
key, value = result.group(1), result.group(2)
if key in repeated_keys:
if key not in pars:
pars[key] = []
pars[key].append(value)
else:
pars[key] = value
# Command line parameters override the ones in the madam parameter file
if 'file_root' not in pars:
pars['file_root'] = 'madam'
if args.madam_prefix is not None:
pars['file_root'] = args.madam_prefix
sfreq = '{:03}'.format(args.freq)
if sfreq not in pars['file_root']:
pars['file_root'] += '_' + sfreq
try:
fsample = {30: 32.51, 44: 46.55, 70: 78.77}[args.freq]
except Exception:
fsample = 180.3737
pars['fsample'] = fsample
pars['path_output'] = args.out
pars = comm.comm_world.bcast(pars, root=0)
madam_mcmode = True
if 'nsubchunk' in pars and int(pars['nsubchunk']) > 1:
madam_mcmode = False
if args.noisefile != 'RIMO' or args.noisefile_simu != 'RIMO':
# We split MPI_COMM_WORLD into single process groups, each of
# which is assigned one or more observations (rings)
comm = toast.Comm(groupsize=1)
# This is the distributed data, consisting of one or
# more observations, each distributed over a communicator.
data = toast.Data(comm)
for iobs, tod in enumerate(tods):
if args.noisefile != 'RIMO' or args.noisefile_simu != 'RIMO':
# Use a toast helper method to optimally distribute rings between
# processes.
dist = distribute_discrete(tod.ringsizes, comm.world_size)
my_first_ring, my_n_ring = dist[comm.world_rank]
for my_ring in range(my_first_ring, my_first_ring + my_n_ring):
ringtod = tp.Exchange.from_tod(
tod,
my_ring,
comm.comm_group,
noisefile=args.noisefile,
noisefile_simu=args.noisefile_simu)
ob = {}
ob['name'] = 'ring{:05}'.format(ringtod.globalfirst_ring)
ob['id'] = ringtod.globalfirst_ring
ob['tod'] = ringtod
ob['intervals'] = ringtod.valid_intervals
ob['baselines'] = None
ob['noise'] = ringtod.noise
ob['noise_simu'] = ringtod.noise_simu
data.obs.append(ob)
else:
ob = {}
ob['name'] = 'observation{:04}'.format(iobs)
ob['id'] = 0
ob['tod'] = tod
ob['intervals'] = tod.valid_intervals
ob['baselines'] = None
ob['noise'] = tod.noise
ob['noise_simu'] = tod.noise
data.obs.append(ob)
rimo = tods[0].rimo
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Metadata queries")
# Always read the signal and flags, even if the signal is later
# overwritten. There is no overhead for the signal because it is
# interlaced with the flags.
tod_name = 'signal'
timestamps_name = 'timestamps'
flags_name = 'flags'
common_flags_name = 'common_flags'
reader = tp.OpInputPlanck(signal_name=tod_name,
flags_name=flags_name,
timestamps_name=timestamps_name,
commonflags_name=common_flags_name)
if comm.world_rank == 0:
print('Reading input signal from {}'.format(args.effdir), flush=True)
reader.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Read")
# Clear the signal if we don't need it
if not args.read_eff:
eraser = tp.OpCacheMath(in1=tod_name,
in2=0,
multiply=True,
out=tod_name)
if comm.world_rank == 0:
print('Erasing TOD', flush=True)
eraser.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Erase")
# Optionally flag bad intervals
if args.bad_intervals is not None:
flagger = tp.OpBadIntervals(path=args.bad_intervals)
flagger.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Apply {}".format(args.bad_intervals))
# Now read an optional second TOD to add with the first
if args.effdir2 is not None:
# Read the extra TOD and add it to the first one
reader = tp.OpInputPlanck(signal_name='tod2',
flags_name=None,
timestamps_name=None,
commonflags_name=None,
effdir=args.effdir2)
if comm.world_rank == 0:
print('Reading extra TOD from {}'.format(args.effdir2), flush=True)
reader.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
print("Reading took {:.3f} s".format(elapsed), flush=True)
adder = tp.OpCacheMath(in1=tod_name,
in2='signal2',
add=True,
out=tod_name)
if comm.world_rank == 0:
print('Adding TODs', flush=True)
adder.exec(data)
# Erase the extra cache object
for ob in data.obs:
tod = ob['tod']
tod.cache.clear('signal2_.*')
if args.effdir_fsl is not None:
# Read the straylight signal into the tod cache under
# "fsl_<detector>"
reader = tp.OpInputPlanck(signal_name='fsl',
flags_name=None,
timestamps_name=None,
commonflags_name=None,
effdir=args.effdir_fsl)
if comm.world_rank == 0:
print('Reading straylight signal from {}'.format(args.effdir_fsl),
flush=True)
reader.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Read FSL")
do_fsl = True
else:
do_fsl = False
# make a planck Healpix pointing matrix
mode = 'IQU'
if pars['temperature_only'] == 'T':
mode = 'I'
if args.nside is None:
if 'nside_map' in pars:
nside = int(pars['nside_map'])
else:
raise RuntimeError(
'Nside must be set either in the Madam parameter file or on '
'the command line')
else:
nside = args.nside
pars['nside_map'] = nside
if 'nside_cross' not in pars or pars['nside_cross'] > pars['nside_map']:
pars['nside_cross'] = pars['nside_map']
do_dipole = args.dipole or args.solsys_dipole or args.orbital_dipole
pointing = tp.OpPointingPlanck(nside=nside,
mode=mode,
RIMO=rimo,
margin=0,
apply_flags=True,
keep_vel=do_dipole,
keep_pos=False,
keep_phase=False,
keep_quats=do_dipole)
pointing.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Pointing Matrix")
flags_name = 'flags'
common_flags_name = 'common_flags'
# for now, we pass in the noise weights from the RIMO.
detweights = {}
for d in tod.detectors:
net = tod.rimo[d].net
fsample = tod.rimo[d].fsample
detweights[d] = 1.0 / (fsample * net * net)
if args.debug:
with open("debug_planck_exchange_madam.txt", "w") as f:
data.info(f)
if do_dipole:
# Simulate the dipole
if args.dipole:
dipomode = 'total'
elif args.solsys_dipole:
dipomode = 'solsys'
else:
dipomode = 'orbital'
dipo = tp.OpDipolePlanck(args.freq,
solsys_speed=args.solsys_speed,
solsys_glon=args.solsys_glon,
solsys_glat=args.solsys_glat,
mode=dipomode,
output='dipole',
keep_quats=False)
dipo.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Dipole")
# Loop over Monte Carlos
madam = None
for mc in range(args.MC_start, args.MC_start + args.MC_count):
out = "{}/{:05d}".format(args.out, mc)
if comm.world_rank == 0:
if not os.path.isdir(out):
os.makedirs(out)
# clear all noise data from the cache, so that we can generate
# new noise timestreams.
for ob in data.obs:
ob['tod'].cache.clear("noise_.*")
tod_name = 'signal'
if do_dipole:
adder = tp.OpCacheMath(in1=tod_name,
in2='dipole',
add=True,
out='noise')
adder.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("MC {}: Add dipole".format(mc))
tod_name = 'noise'
# Simulate noise
if not args.skip_noise:
tod_name = 'noise'
nse = toast.tod.OpSimNoise(out=tod_name,
realization=mc,
component=0,
noise='noise_simu',
rate=fsample)
if comm.world_rank == 0:
print('Simulating noise from {}'.format(args.noisefile_simu),
flush=True)
nse.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("MC {}: Noise simulation".format(mc))
# If we didn't add the dipole, we need to add the input
# signal with the noise we just simulated
if args.read_eff and not do_dipole:
adder = tp.OpCacheMath(in1=tod_name,
in2='signal',
add=True,
out=tod_name)
adder.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("MC {}: Add input signal".format(mc))
# Make rings
if args.make_rings:
ringmaker = tp.OpRingMaker(args.nside_ring,
nside,
signal=tod_name,
fileroot=args.ring_root,
out=out,
commonmask=args.obtmask,
detmask=args.flagmask)
ringmaker.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("MC {}: Ringmaking".format(mc))
# Apply calibration errors
if args.decalibrate is not None:
fn = args.decalibrate
try:
fn = fn.format(mc)
except Exception:
pass
if comm.world_rank == 0:
print('Decalibrating with {}'.format(fn), flush=True)
decalibrator = tp.OpCalibPlanck(signal_in=tod_name,
signal_out='noise',
file_gain=fn,
decalibrate=True)
decalibrator.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("MC {}: Decalibrate".format(mc))
tod_name = 'noise'
if args.calibrate is not None:
fn = args.calibrate
try:
fn = fn.format(mc)
except Exception:
pass
if comm.world_rank == 0:
print('Calibrating with {}'.format(fn), flush=True)
calibrator = tp.OpCalibPlanck(signal_in=tod_name,
signal_out='noise',
file_gain=fn)
calibrator.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("MC {}: Calibrate".format(mc))
tod_name = 'noise'
# Subtract the dipole and straylight
if do_dipole:
subtractor = tp.OpCacheMath(in1=tod_name,
in2='dipole',
subtract=True,
out='noise')
subtractor.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("MC {}: Subtract dipole".format(mc))
tod_name = 'noise'
if do_fsl:
subtractor = tp.OpCacheMath(in1=tod_name,
in2='fsl',
subtract=True,
out='noise')
subtractor.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("MC {}: Subtract straylight".format(mc))
tod_name = 'noise'
# Make the map
if not args.skip_madam:
# Make maps
if madam is None:
try:
madam = toast.todmap.OpMadam(params=pars,
detweights=detweights,
purge_tod=True,
name=tod_name,
apply_flags=False,
name_out=None,
noise='noise',
mcmode=madam_mcmode,
translate_timestamps=False)
except Exception as e:
raise Exception(
'{:4} : ERROR: failed to initialize Madam: '
'{}'.format(comm.world_rank, e))
madam.params['path_output'] = out
madam.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("MC {}: Mapmaking".format(mc))
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if comm.world_rank == 0:
out = os.path.join(args.out, "timing")
dump_timing(alltimers, out)
timer.stop()
timer.report("Gather and dump timing info")
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_planck_reduce (total)")
mpiworld, procs, rank, comm = get_comm()
# This is the 2-level toast communicator. By default,
# there is just one group which spans MPI_COMM_WORLD.
comm = toast.Comm()
if comm.comm_world.rank == 0:
print('Running with {} processes at {}'
''.format(procs, str(datetime.datetime.now())))
parser = argparse.ArgumentParser(description='Planck Ringset making',
fromfile_prefix_chars='@')
parser.add_argument('--rimo', required=True, help='RIMO file')
parser.add_argument('--freq', required=True, type=np.int, help='Frequency')
parser.add_argument('--dets',
required=False,
default=None,
help='Detector list (comma separated)')
parser.add_argument('--nosingle',
dest='nosingle',
required=False,
default=False,
action='store_true',
help='Do not compute single detector PSDs')
parser.add_argument('--effdir',
required=True,
help='Input Exchange Format File directory')
parser.add_argument('--effdir_pntg',
required=False,
help='Input Exchange Format File directory '
'for pointing')
parser.add_argument('--obtmask',
required=False,
default=1,
type=np.int,
help='OBT flag mask')
parser.add_argument('--flagmask',
required=False,
default=1,
type=np.int,
help='Quality flag mask')
parser.add_argument('--skymask', required=False, help='Pixel mask file')
parser.add_argument('--skymap', required=False, help='Sky estimate file')
parser.add_argument('--skypol',
dest='skypol',
required=False,
default=False,
action='store_true',
help='Sky estimate is polarized')
parser.add_argument('--no_spin_harmonics',
dest='no_spin_harmonics',
required=False,
default=False,
action='store_true',
help='Do not include PSD bins with spin harmonics')
parser.add_argument('--calibrate',
required=False,
help='Path to calibration file to calibrate with.')
parser.add_argument('--calibrate_signal_estimate',
dest='calibrate_signal_estimate',
required=False,
default=False,
action='store_true',
help='Calibrate '
'the signal estimate using linear regression.')
parser.add_argument('--ringdb', required=True, help='Ring DB file')
parser.add_argument('--odfirst',
required=False,
default=None,
type=np.int,
help='First OD to use')
parser.add_argument('--odlast',
required=False,
default=None,
type=np.int,
help='Last OD to use')
parser.add_argument('--ringfirst',
required=False,
default=None,
type=np.int,
help='First ring to use')
parser.add_argument('--ringlast',
required=False,
default=None,
type=np.int,
help='Last ring to use')
parser.add_argument('--obtfirst',
required=False,
default=None,
type=np.float,
help='First OBT to use')
parser.add_argument('--obtlast',
required=False,
default=None,
type=np.float,
help='Last OBT to use')
parser.add_argument('--out',
required=False,
default='.',
help='Output directory')
parser.add_argument('--nbin_psd',
required=False,
default=1000,
type=np.int,
help='Number of logarithmically '
'distributed spectral bins to write.')
parser.add_argument('--lagmax',
required=False,
default=100000,
type=np.int,
help='Maximum lag to evaluate for the '
'autocovariance function [samples].')
parser.add_argument('--stationary_period',
required=False,
default=86400.,
type=np.float,
help='Length of a stationary interval [seconds].')
# Dipole parameters
dipogroup = parser.add_mutually_exclusive_group()
dipogroup.add_argument('--dipole',
dest='dipole',
required=False,
default=False,
action='store_true',
help='Simulate dipole')
dipogroup.add_argument('--solsys_dipole',
dest='solsys_dipole',
required=False,
default=False,
action='store_true',
help='Simulate solar system dipole')
dipogroup.add_argument('--orbital_dipole',
dest='orbital_dipole',
required=False,
default=False,
action='store_true',
help='Simulate orbital dipole')
# Extra filter
parser.add_argument('--filterfile',
required=False,
help='Extra filter file.')
try:
args = parser.parse_args()
except SystemExit:
sys.exit(0)
if comm.comm_world.rank == 0:
print('All parameters:')
print(args, flush=True)
timer = Timer()
timer.start()
odrange = None
if args.odfirst is not None and args.odlast is not None:
odrange = (args.odfirst, args.odlast)
ringrange = None
if args.ringfirst is not None and args.ringlast is not None:
ringrange = (args.ringfirst, args.ringlast)
obtrange = None
if args.obtfirst is not None and args.obtlast is not None:
obtrange = (args.obtfirst, args.obtlast)
detectors = None
if args.dets is not None:
detectors = re.split(',', args.dets)
if args.nosingle and len(detectors) != 2:
raise RuntimeError('You cannot skip the single detectors PSDs '
'without multiple detectors.')
# This is the distributed data, consisting of one or
# more observations, each distributed over a communicator.
data = toast.Data(comm)
# Make output directory
if not os.path.isdir(args.out) and comm.comm_world.rank == 0:
os.mkdir(args.out)
# create the TOD for this observation
tod = tp.Exchange(
comm=comm.comm_group,
detectors=detectors,
ringdb=args.ringdb,
effdir_in=args.effdir,
effdir_pntg=args.effdir_pntg,
obt_range=obtrange,
ring_range=ringrange,
od_range=odrange,
freq=args.freq,
RIMO=args.rimo,
obtmask=args.obtmask,
flagmask=args.flagmask,
do_eff_cache=False,
)
rimo = tod.rimo
ob = {}
ob['name'] = 'mission'
ob['id'] = 0
ob['tod'] = tod
ob['intervals'] = tod.valid_intervals
ob['baselines'] = None
ob['noise'] = tod.noise
data.obs.append(ob)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Metadata queries")
# Read the signal
tod_name = 'signal'
flags_name = 'flags'
reader = tp.OpInputPlanck(signal_name=tod_name, flags_name=flags_name)
if comm.comm_world.rank == 0:
print('Reading input signal from {}'.format(args.effdir), flush=True)
reader.exec(data)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Reading")
if args.calibrate is not None:
fn = args.calibrate
if comm.comm_world.rank == 0:
print('Calibrating with {}'.format(fn), flush=True)
calibrator = tp.OpCalibPlanck(signal_in=tod_name,
signal_out=tod_name,
file_gain=fn)
calibrator.exec(data)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Calibrate")
# Optionally subtract the dipole
do_dipole = (args.dipole or args.solsys_dipole or args.orbital_dipole)
if do_dipole:
if args.dipole:
dipomode = 'total'
elif args.solsys_dipole:
dipomode = 'solsys'
else:
dipomode = 'orbital'
dipo = tp.OpDipolePlanck(args.freq,
mode=dipomode,
output='dipole',
keep_quats=True)
dipo.exec(data)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Dipole")
subtractor = tp.OpCacheMath(in1=tod_name,
in2='dipole',
subtract=True,
out=tod_name)
if comm.comm_world.rank == 0:
print('Subtracting dipole', flush=True)
subtractor.exec(data)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Dipole subtraction")
# Optionally filter the signal
apply_filter(args, data)
timer.clear()
# Estimate noise
noise_estimator = tp.OpNoiseEstim(
signal=tod_name,
flags=flags_name,
detmask=args.flagmask,
commonmask=args.obtmask,
maskfile=args.skymask,
mapfile=args.skymap,
out=args.out,
rimo=rimo,
pol=args.skypol,
nbin_psd=args.nbin_psd,
lagmax=args.lagmax,
stationary_period=args.stationary_period,
nosingle=args.nosingle,
no_spin_harmonics=args.no_spin_harmonics,
calibrate_signal_estimate=args.calibrate_signal_estimate)
noise_estimator.exec(data)
comm.comm_world.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Noise estimation")
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if comm.world_rank == 0:
out = os.path.join(args.out, "timing")
dump_timing(alltimers, out)
timer.stop()
timer.report("Gather and dump timing info")
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_so_sim (total)")
timer0 = Timer()
timer0.start()
mpiworld, procs, rank, comm = toast_tools.get_comm()
memreport("at the beginning of the pipeline", comm.comm_world)
args, comm = parse_arguments(comm)
if args.use_madam:
# Initialize madam parameters
madampars = toast_tools.setup_madam(args)
else:
madampars = None
if args.import_dir is not None:
schedules = None
data, telescope_data, detweights = so_tools.load_observations(
args, comm)
memreport("after load", comm.comm_world)
totalname = "signal"
else:
# Load and broadcast the schedule file
schedules = toast_tools.load_schedule(args, comm)
# Load the weather and append to schedules
toast_tools.load_weather(args, comm, schedules)
# load or simulate the focalplane
detweights = so_tools.load_focalplanes(args, comm, schedules)
# Create the TOAST data object to match the schedule. This will
# include simulating the boresight pointing.
data, telescope_data = so_tools.create_observations(
args, comm, schedules)
memreport("after creating observations", comm.comm_world)
# Optionally rewrite the noise PSD:s in each observation to include
# elevation-dependence
so_tools.get_elevation_noise(args, comm, data)
totalname = "total"
# Split the communicator for day and season mapmaking
time_comms = toast_tools.get_time_communicators(args, comm, data)
# Rotate the LAT focalplane around the boresight based on co-rotator position
so_tools.rotate_focalplane(args, data, comm)
# Expand boresight quaternions into detector pointing weights and
# pixel numbers
toast_tools.expand_pointing(args, comm, data)
# Flag Solar system objects
so_tools.apply_flag_sso(args, comm, data)
# Optionally, output h_n maps
so_tools.compute_h_n(args, comm, data)
# Optionally, output crosslinking map
so_tools.compute_crosslinking(args, comm, data, detweights)
# Optionally, output cadence map
so_tools.compute_cadence_map(args, comm, data)
# Only purge the pointing if we are NOT going to export the
# data to a TIDAS volume
if not (args.tidas is None) and (args.export is None):
for ob in data.obs:
tod = ob["tod"]
try:
tod.free_radec_quats()
except AttributeError:
# These TOD objects do not have RA/Dec quaternions
pass
memreport("after pointing", comm.comm_world)
# Set up objects to take copies of the TOD at appropriate times
if args.pysm_model:
if schedules is not None:
focalplanes = [
s.telescope.focalplane.detector_data for s in schedules
]
else:
focalplanes = [telescope.focalplane.detector_data]
signalname = so_tools.simulate_sky_signal(args, comm, data,
focalplanes)
else:
signalname = toast_tools.scan_sky_signal(args, comm, data)
memreport("after PySM", comm.comm_world)
# Loop over Monte Carlos
firstmc = int(args.MC_start)
nmc = int(args.MC_count)
for mc in range(firstmc, firstmc + nmc):
if comm.world_rank == 0:
log.info("Processing MC = {}".format(mc))
toast_tools.draw_weather(args, comm, data, mc)
toast_tools.simulate_atmosphere(args, comm, data, mc, totalname)
#so_tools.scale_atmosphere_by_bandpass(args, comm, data, totalname, mc)
toast_tools.scale_atmosphere_by_frequency(
args,
comm,
data,
cache_name=totalname,
mc=mc,
)
memreport("after atmosphere", comm.comm_world)
so_tools.simulate_hwpss(args, comm, data, mc, totalname)
# update_atmospheric_noise_weights(args, comm, data, freq, mc)
toast_tools.add_signal(args,
comm,
data,
totalname,
signalname,
purge=(mc == firstmc + nmc - 1))
memreport("after adding sky", comm.comm_world)
toast_tools.simulate_sss(args, comm, data, mc, totalname)
memreport("after simulating SSS", comm.comm_world)
toast_tools.simulate_noise(args, comm, data, mc, totalname)
memreport("after simulating noise", comm.comm_world)
so_tools.apply_sim_sso(args, comm, data, mc, totalname)
memreport("after simulating SSO", comm.comm_world)
so_tools.convolve_time_constant(args, comm, data, totalname)
memreport("after convolving with time constant", comm.comm_world)
# DEBUG begin
"""
import matplotlib.pyplot as plt
tod = data.obs[0]['tod']
times = tod.local_times()
for det in tod.local_dets:
sig = tod.local_signal(det, totalname)
plt.plot(times, sig, label=det)
plt.legend(loc='best')
fnplot = 'debug_{}.png'.format(args.madam_prefix)
plt.savefig(fnplot)
plt.close()
print('DEBUG plot saved in', fnplot)
return
"""
# DEBUG end
toast_tools.scramble_gains(args, comm, data, mc, totalname)
so_tools.deconvolve_time_constant(args,
comm,
data,
totalname,
realization=mc)
memreport("after deconvolving time constant", comm.comm_world)
if mc == firstmc:
# For the first realization and frequency, optionally
# export the timestream data.
toast_tools.output_tidas(args, comm, data, totalname)
so_tools.export_TOD(args, comm, data, totalname, schedules)
memreport("after export", comm.comm_world)
if args.no_maps:
continue
outpath = setup_output(args, comm, mc)
# Optionally demodulate signal
so_tools.demodulate(args, comm, data, totalname, detweights, madampars)
# Bin and destripe maps
if args.use_madam:
toast_tools.apply_madam(
args,
comm,
data,
madampars,
outpath,
detweights,
totalname,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=(mc == firstmc),
)
else:
toast_tools.apply_mapmaker(
args,
comm,
data,
outpath,
totalname,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=(mc == firstmc),
)
memreport("after destriper", comm.comm_world)
if (args.filterbin_ground_order is not None
or args.filterbin_poly_order is not None):
toast_tools.apply_filterbin(
args,
comm,
data,
outpath,
totalname,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=(mc == firstmc),
)
if args.apply_polyfilter or args.apply_groundfilter:
# Filter signal
toast_tools.apply_polyfilter(args, comm, data, totalname)
memreport("after polyfilter", comm.comm_world)
# Ground filter
memreport("after demodulation", comm.comm_world)
toast_tools.apply_groundfilter(args, comm, data, totalname)
memreport("after groundfilter", comm.comm_world)
# Bin maps
if args.use_madam:
toast_tools.apply_madam(
args,
comm,
data,
madampars,
outpath,
detweights,
totalname,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=args.demodulate,
extra_prefix="filtered",
bin_only=True,
)
else:
toast_tools.apply_mapmaker(
args,
comm,
data,
outpath,
totalname,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=False,
extra_prefix="filtered",
bin_only=True,
)
memreport("after filter & bin", comm.comm_world)
if args.demodulate and args.MC_count > 1:
if comm.world_rank == 0:
log.info("WARNING: demodulation and MC iterations are "
"incompatible. Terminating after first MC.")
break
if comm.comm_world is not None:
comm.comm_world.barrier()
memreport("at the end of the pipeline", comm.comm_world)
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if rank == 0:
out = os.path.join(args.outdir, "timing")
dump_timing(alltimers, out)
timer.stop()
timer.report("Gather and dump timing info")
timer0.stop()
if comm.world_rank == 0:
timer0.report("toast_so_sim.py pipeline")
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_planck_reduce (total)")
mpiworld, procs, rank, comm = get_comm()
# This is the 2-level toast communicator. By default,
# there is just one group which spans MPI_COMM_WORLD.
comm = toast.Comm()
if comm.world_rank == 0:
print("Running with {} processes at {}".format(
procs, str(datetime.datetime.now())))
parser = argparse.ArgumentParser(
description='Accumulate polarization moments',
fromfile_prefix_chars='@')
parser.add_argument('--rimo', required=True, help='RIMO file')
parser.add_argument('--freq', required=True, type=np.int, help='Frequency')
parser.add_argument('--nside',
required=False,
type=np.int,
default=512,
help='Map resolution')
parser.add_argument('--smax',
required=False,
type=np.int,
default=6,
help='Highest moment')
parser.add_argument('--debug',
dest='debug',
default=False,
action='store_true',
help='Write data distribution info to file')
parser.add_argument('--dets',
required=False,
default=None,
help='Detector list (comma separated)')
parser.add_argument('--effdir',
required=True,
help='Input Exchange Format File directory')
parser.add_argument('--effdir_in_diode0',
required=False,
default=None,
help='Input Exchange Format File directory, '
'LFI diode 0')
parser.add_argument('--effdir_in_diode1',
required=False,
default=None,
help='Input Exchange Format File directory, '
'LFI diode 1')
parser.add_argument('--effdir_pntg',
required=False,
help='Input Exchange Format File directory '
'for pointing')
parser.add_argument('--obtmask',
required=False,
default=1,
type=np.int,
help='OBT flag mask')
parser.add_argument('--flagmask',
required=False,
default=1,
type=np.int,
help='Quality flag mask')
parser.add_argument('--pntflagmask',
required=False,
default=0,
type=np.int,
help='Pointing flag mask')
parser.add_argument('--ringdb', required=True, help='Ring DB file')
parser.add_argument('--odfirst',
required=False,
default=None,
type=np.int,
help='First OD to use')
parser.add_argument('--odlast',
required=False,
default=None,
type=np.int,
help='Last OD to use')
parser.add_argument('--ringfirst',
required=False,
default=None,
help='First ring to use (can be a list)')
parser.add_argument('--ringlast',
required=False,
default=None,
help='Last ring to use (can be a list)')
parser.add_argument('--obtfirst',
required=False,
default=None,
type=np.float,
help='First OBT to use')
parser.add_argument('--obtlast',
required=False,
default=None,
type=np.float,
help='Last OBT to use')
parser.add_argument('--out',
required=False,
default='.',
help='Output directory')
parser.add_argument('--prefix',
required=False,
default='spins',
help='map prefix')
try:
args = parser.parse_args()
except SystemExit:
sys.exit(0)
if comm.world_rank == 0:
print('All parameters:')
print(args, flush=True)
timer = Timer()
timer.start()
nrange = 1
odranges = None
if args.odfirst is not None and args.odlast is not None:
odranges = []
firsts = [int(i) for i in str(args.odfirst).split(',')]
lasts = [int(i) for i in str(args.odlast).split(',')]
for odfirst, odlast in zip(firsts, lasts):
odranges.append((odfirst, odlast))
nrange = len(odranges)
ringranges = None
if args.ringfirst is not None and args.ringlast is not None:
ringranges = []
firsts = [int(i) for i in str(args.ringfirst).split(',')]
lasts = [int(i) for i in str(args.ringlast).split(',')]
for ringfirst, ringlast in zip(firsts, lasts):
ringranges.append((ringfirst, ringlast))
nrange = len(ringranges)
obtranges = None
if args.obtfirst is not None and args.obtlast is not None:
obtranges = []
firsts = [float(i) for i in str(args.obtfirst).split(',')]
lasts = [float(i) for i in str(args.obtlast).split(',')]
for obtfirst, obtlast in zip(firsts, lasts):
obtranges.append((obtfirst, obtlast))
nrange = len(obtranges)
if odranges is None:
odranges = [None] * nrange
if ringranges is None:
ringranges = [None] * nrange
if obtranges is None:
obtranges = [None] * nrange
detectors = None
if args.dets is not None:
detectors = re.split(',', args.dets)
# create the TOD for this observation
tods = []
for obtrange, ringrange, odrange in zip(obtranges, ringranges, odranges):
tods.append(
tp.Exchange(comm=comm.comm_group,
detectors=detectors,
ringdb=args.ringdb,
effdir_in=args.effdir,
effdir_in_diode0=args.effdir_in_diode0,
effdir_in_diode1=args.effdir_in_diode1,
effdir_pntg=args.effdir_pntg,
obt_range=obtrange,
ring_range=ringrange,
od_range=odrange,
freq=args.freq,
RIMO=args.rimo,
obtmask=args.obtmask,
flagmask=args.flagmask,
pntflagmask=args.pntflagmask,
do_eff_cache=False,
noisefile='RIMO'))
rimo = tods[0].rimo
# Make output directory
if not os.path.isdir(args.out) and comm.comm_world.rank == 0:
os.makedirs(args.out)
# This is the distributed data, consisting of one or
# more observations, each distributed over a communicator.
data = toast.Data(comm)
for iobs, tod in enumerate(tods):
ob = {}
ob['name'] = 'observation{:04}'.format(iobs)
ob['id'] = 0
ob['tod'] = tod
ob['intervals'] = tod.valid_intervals
ob['baselines'] = None
ob['noise'] = tod.noise
data.obs.append(ob)
if mpiworld is not None:
mpiworld.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Metadata queries")
# Accumulate and save the moment maps
polmoments = tp.OpPolMomentsPlanck(nside=args.nside,
RIMO=rimo,
margin=0,
keep_vel=False,
keep_pos=False,
keep_phase=False,
keep_quats=False,
smax=args.smax,
prefix=os.path.join(
args.out, args.prefix))
polmoments.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.comm_world.rank == 0:
timer.report_clear("Accumulate moment maps")
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if comm.world_rank == 0:
out = os.path.join(args.out, "timing")
dump_timing(alltimers, out)
timer.stop()
timer.report("Gather and dump timing info")
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_so_sim (total)")
timer0 = Timer()
timer0.start()
mpiworld, procs, rank, comm = toast_tools.get_comm()
memreport("at the beginning of the pipeline", comm.comm_world)
args, comm = parse_arguments(comm)
# Load and broadcast the schedule file
schedules = toast_tools.load_schedule(args, comm)
# Load the weather and append to schedules
toast_tools.load_weather(args, comm, schedules)
# load or simulate the focalplane
detweights = so_tools.load_focalplanes(args, comm, schedules)
# Create the TOAST data object to match the schedule. This will
# include simulating the boresight pointing.
data, telescope_data = so_tools.create_observations(args, comm, schedules)
memreport("after creating observations", comm.comm_world)
# Optionally rewrite the noise PSD:s in each observation to include
# elevation-dependence
so_tools.get_elevation_noise(args, comm, data)
totalname = "total"
# Split the communicator for day and season mapmaking
time_comms = toast_tools.get_time_communicators(args, comm, data)
# Expand boresight quaternions into detector pointing weights and
# pixel numbers
toast_tools.expand_pointing(args, comm, data)
memreport("after pointing", comm.comm_world)
# Loop over Monte Carlos
firstmc = int(args.MC_start)
nmc = int(args.MC_count)
madam = None
for mc in range(firstmc, firstmc + nmc):
timer_mc = Timer()
timer_mc.start()
outpath = setup_output(args, comm, mc)
outprefix = args.map_prefix + "_filtered"
if args.madam:
outmap = os.path.join(outpath, outprefix + "_bmap.fits")
else:
outmap = os.path.join(outpath, outprefix + "_binned.fits")
if os.path.isfile(outmap):
if comm.world_rank == 0:
log.info("{} exists, skipping".format(outmap))
continue
if comm.world_rank == 0:
log.info("Processing MC = {} into {}".format(mc, outmap))
# Ensure there is no stale signal in the cache
toast.tod.OpCacheClear(totalname).exec(data)
if args.pysm_model:
if schedules is not None:
focalplanes = [
s.telescope.focalplane.detector_data for s in schedules
]
else:
focalplanes = [telescope.focalplane.detector_data]
so_tools.simulate_sky_signal(args,
comm,
data,
focalplanes,
totalname,
mc=mc)
else:
toast_tools.scan_sky_signal(args, comm, data, totalname, mc=mc)
memreport("after PySM", comm.comm_world)
if args.apply_polyfilter or args.apply_groundfilter:
# Filter signal
toast_tools.apply_polyfilter(args, comm, data, totalname)
toast_tools.apply_groundfilter(args, comm, data, totalname)
memreport("after filter", comm.comm_world)
# Bin maps
timer_map = Timer()
timer_map.start()
if args.madam:
if madam is None:
madampars = {}
madampars["temperature_only"] = False
for name in [
"kfirst", "write_map", "write_matrix",
"write_wcov", "write_hits"
]:
madampars[name] = False
madampars["write_binmap"] = True
madampars["concatenate_messages"] = True
madampars["allreduce"] = True
madampars["nside_submap"] = args.nside_submap
madampars["reassign_submaps"] = True
madampars["pixlim_map"] = 1e-2
madampars["pixmode_map"] = 2
# Instead of fixed detector weights, we'll want to use scaled noise
# PSD:s that include the atmospheric noise
madampars["radiometers"] = True
madampars["noise_weights_from_psd"] = True
madampars["nside_map"] = args.nside
madampars["fsample"] = args.sample_rate
madampars["path_output"] = outpath
madampars["file_root"] = outprefix
if args.madam_concatenate_messages:
# Collective communication is fast but requires memory
madampars["concatenate_messages"] = True
if args.madam_allreduce:
# Every process will allocate a copy of every observed submap.
madampars["allreduce"] = True
else:
# Every process will allocate complete send and receive buffers
madampars["allreduce"] = False
else:
# Slow but memory-efficient point-to-point communication. Allocate
# only enough memory to communicate with one process at a time.
madampars["concatenate_messages"] = False
madampars["allreduce"] = False
madam = toast.todmap.OpMadam(
params=madampars,
detweights=detweights,
name=totalname,
common_flag_mask=args.common_flag_mask,
purge_tod=True,
mcmode=False,
conserve_memory=args.madam_conserve_memory,
)
else:
madam.params["path_output"] = outpath
madam.exec(data)
del madam
madam = None
else:
mapmaker = toast.todmap.OpMapMaker(
nside=args.nside,
nnz=3,
name=totalname,
outdir=outpath,
outprefix=outprefix + "_",
write_hits=False,
zip_maps=False,
write_wcov_inv=False,
write_wcov=False,
write_binned=True,
write_destriped=False,
write_rcond=False,
rcond_limit=1e-3,
baseline_length=None,
common_flag_mask=args.common_flag_mask,
)
mapmaker.exec(data)
if comm.world_rank == 0:
timer_map.report_clear("Bin map")
memreport("after filter & bin", comm.comm_world)
if comm.world_rank == 0:
timer_mc.report_clear(
"Monte Carlo iteration # {:05}".format(mc))
if comm.comm_world is not None:
comm.comm_world.barrier()
memreport("at the end of the pipeline", comm.comm_world)
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if rank == 0:
out = os.path.join(args.outdir, "timing")
dump_timing(alltimers, out)
timer.report_clear("Gather and dump timing info")
if comm.world_rank == 0:
timer0.report_clear("toast_so_tf.py pipeline")
return
def main():
timer0 = Timer()
timer0.start()
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_planck_reduce (total)")
mpiworld, procs, rank, comm = get_comm()
memreport("At start of pipeline", mpiworld)
if comm.world_rank == 0:
print("Running with {} processes at {}".format(
procs, str(datetime.datetime.now())))
parser = argparse.ArgumentParser(description='Simple MADAM Mapmaking',
fromfile_prefix_chars='@')
parser.add_argument('--rimo', required=True, help='RIMO file')
parser.add_argument('--freq', required=True, type=np.int, help='Frequency')
parser.add_argument('--debug',
dest='debug',
default=False,
action='store_true',
help='Write data distribution info to file')
parser.add_argument('--dets',
required=False,
default=None,
help='Detector list (comma separated)')
parser.add_argument('--effdir',
required=True,
help='Input Exchange Format File directory')
parser.add_argument('--effdir_pntg',
required=False,
help='Input Exchange Format File directory '
'for pointing')
parser.add_argument('--coord',
default='G',
help='Coordinate system, "G", "E" or "C"')
parser.add_argument('--obtmask',
required=False,
default=1,
type=np.int,
help='OBT flag mask')
parser.add_argument('--flagmask',
required=False,
default=1,
type=np.int,
help='Quality flag mask')
parser.add_argument('--pntflagmask',
required=False,
default=0,
type=np.int,
help='Pointing flag mask')
parser.add_argument('--bad_intervals',
required=False,
help='Path to bad interval file.')
parser.add_argument('--ringdb', required=True, help='Ring DB file')
parser.add_argument('--odfirst',
required=False,
default=None,
type=np.int,
help='First OD to use')
parser.add_argument('--odlast',
required=False,
default=None,
type=np.int,
help='Last OD to use')
parser.add_argument('--ringfirst',
required=False,
default=None,
help='First ring to use (can be a list)')
parser.add_argument('--ringlast',
required=False,
default=None,
help='Last ring to use (can be a list)')
parser.add_argument('--obtfirst',
required=False,
default=None,
type=np.float,
help='First OBT to use')
parser.add_argument('--obtlast',
required=False,
default=None,
type=np.float,
help='Last OBT to use')
parser.add_argument('--out',
required=False,
default='.',
help='Output directory')
parser.add_argument('--catalog', required=True, help='Target catalog file')
parser.add_argument('--radius',
required=True,
type=np.float,
help='Search radius about the source [arc min]')
parser.add_argument('--mask',
required=False,
help='Mask defining region of the sky to accept')
parser.add_argument('--bg',
required=False,
help='Background map to subtract')
parser.add_argument('--recalib_bg',
dest='recalib_bg',
default=False,
action='store_true',
help='Recalibrate bg map for each ring.')
parser.add_argument('--full_rings',
dest='full_rings',
default=False,
action='store_true',
help='Extract impacted rings entirely.')
# noise parameters
parser.add_argument('--noisefile',
required=False,
default='RIMO',
help='Path to noise PSD files for noise filter. '
'Tag DETECTOR will be replaced with detector name.')
# Dipole parameters
dipogroup = parser.add_mutually_exclusive_group()
dipogroup.add_argument('--dipole',
dest='dipole',
required=False,
default=False,
action='store_true',
help='Simulate dipole')
dipogroup.add_argument('--solsys_dipole',
dest='solsys_dipole',
required=False,
default=False,
action='store_true',
help='Simulate solar system dipole')
dipogroup.add_argument('--orbital_dipole',
dest='orbital_dipole',
required=False,
default=False,
action='store_true',
help='Simulate orbital dipole')
try:
args = parser.parse_args()
except SystemExit:
sys.exit(0)
if comm.world_rank == 0:
print('All parameters:')
print(args, flush=True)
data = create_observations(args, comm)
rimo = data.obs[0]["tod"].rimo
memreport("After create observations", mpiworld)
# Read in the signal
timer = Timer()
timer.start()
reader = tp.OpInputPlanck(signal_name='signal', flags_name='flags')
if comm.world_rank == 0:
print('Reading input signal from {}'.format(args.effdir), flush=True)
reader.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Reading")
tod_name = 'signal'
flags_name = 'flags'
memreport("After read", mpiworld)
# Optionally flag bad intervals
if args.bad_intervals is not None:
flagger = tp.OpBadIntervals(path=args.bad_intervals)
flagger.exec(data)
if comm.world_rank == 0:
timer.report_clear("Applying {}".format(args.bad_intervals))
do_dipole = (args.dipole or args.solsys_dipole or args.orbital_dipole)
# make a planck Healpix pointing matrix
pointing = tp.OpPointingPlanck(nside=1024,
mode='IQU',
RIMO=rimo,
margin=0,
apply_flags=False,
keep_vel=do_dipole,
keep_pos=False,
keep_phase=True,
keep_quats=True)
pointing.exec(data)
memreport("After pointing", mpiworld)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Pointing Matrix")
# Optionally subtract the dipole
if do_dipole:
if args.dipole:
dipomode = 'total'
elif args.solsys_dipole:
dipomode = 'solsys'
else:
dipomode = 'orbital'
dipo = tp.OpDipolePlanck(args.freq,
mode=dipomode,
output='dipole',
keep_quats=True)
dipo.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Dipole")
subtractor = tp.OpCacheMath(in1=tod_name,
in2='dipole',
subtract=True,
out=tod_name)
if comm.comm_world.rank == 0:
print('Subtracting dipole', flush=True)
subtractor.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Dipole subtraction")
memreport("After dipole", mpiworld)
extract = tp.OpExtractPlanck(rimo,
args.catalog,
args.radius,
mpiworld,
common_flag_mask=args.obtmask,
flag_mask=args.flagmask,
maskfile=args.mask,
bg=args.bg,
full_rings=args.full_rings,
recalibrate_bg=args.recalib_bg,
out=args.out)
extract.exec(data)
memreport("After extract", mpiworld)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Extraction")
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if comm.world_rank == 0:
out = os.path.join(args.out, "timing")
dump_timing(alltimers, out)
timer.report_clear("Gather and dump timing info")
timer0.report_clear("Full pipeline")
return
def main():
env = Environment.get()
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_satellite_sim (total)")
timer0 = Timer()
timer0.start()
mpiworld, procs, rank, comm = pipeline_tools.get_comm()
args, comm, groupsize = parse_arguments(comm, procs)
# Parse options
tmr = Timer()
tmr.start()
if comm.world_rank == 0:
os.makedirs(args.outdir, exist_ok=True)
focalplane, gain, detweights = load_focalplane(args, comm)
if comm.world_rank == 0:
tmr.report_clear("Load focalplane")
data = create_observations(args, comm, focalplane, groupsize)
if comm.world_rank == 0:
tmr.report_clear("Create observations")
pipeline_tools.expand_pointing(args, comm, data)
if comm.world_rank == 0:
tmr.report_clear("Expand pointing")
signalname = None
if args.pysm_model:
skyname = pipeline_tools.simulate_sky_signal(args, comm, data,
[focalplane], "signal")
else:
skyname = pipeline_tools.scan_sky_signal(args, comm, data, "signal")
if skyname is not None:
signalname = skyname
if comm.world_rank == 0:
tmr.report_clear("Simulate sky signal")
# NOTE: Conviqt could use different input file names for different
# Monte Carlo indices, but the operator would need to be invoked within
# the Monte Carlo loop.
skyname = pipeline_tools.apply_conviqt(
args,
comm,
data,
"signal",
mc=args.MC_start,
)
if skyname is not None:
signalname = skyname
if comm.world_rank == 0:
tmr.report_clear("Apply beam convolution")
diponame = pipeline_tools.simulate_dipole(args, comm, data, "signal")
if diponame is not None:
signalname = diponame
if comm.world_rank == 0:
tmr.report_clear("Simulate dipole")
# in debug mode, print out data distribution information
if args.debug:
handle = None
if comm.world_rank == 0:
handle = open(os.path.join(args.outdir, "distdata.txt"), "w")
data.info(handle)
if comm.world_rank == 0:
handle.close()
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
tmr.report_clear("Dumping data distribution")
# in debug mode, print out data distribution information
if args.debug:
handle = None
if comm.world_rank == 0:
handle = open(os.path.join(args.outdir, "distdata.txt"), "w")
data.info(handle)
if comm.world_rank == 0:
handle.close()
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
tmr.report_clear("Dumping data distribution")
# Mapmaking.
if args.use_madam:
# Initialize madam parameters
madampars = pipeline_tools.setup_madam(args)
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
tmr.report_clear("Initialize madam map-making")
# Loop over Monte Carlos
firstmc = args.MC_start
nmc = args.MC_count
for mc in range(firstmc, firstmc + nmc):
mctmr = Timer()
mctmr.start()
# create output directory for this realization
outpath = os.path.join(args.outdir, "mc_{:03d}".format(mc))
pipeline_tools.simulate_noise(args,
comm,
data,
mc,
"tot_signal",
overwrite=True)
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
tmr.report_clear(" Simulate noise {:04d}".format(mc))
# add sky signal
pipeline_tools.add_signal(args, comm, data, "tot_signal", signalname)
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
tmr.report_clear(" Add sky signal {:04d}".format(mc))
if gain is not None:
op_apply_gain = OpApplyGain(gain, name="tot_signal")
op_apply_gain.exec(data)
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
tmr.report_clear(" Apply gains {:04d}".format(mc))
if mc == firstmc:
# For the first realization, optionally export the
# timestream data. If we had observation intervals defined,
# we could pass "use_interval=True" to the export operators,
# which would ensure breaks in the exported data at
# acceptable places.
pipeline_tools.output_tidas(args, comm, data, "tot_signal")
pipeline_tools.output_spt3g(args, comm, data, "tot_signal")
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
tmr.report_clear(" Write TOD snapshot {:04d}".format(mc))
if args.use_madam:
pipeline_tools.apply_madam(args, comm, data, madampars, outpath,
detweights, "tot_signal")
else:
pipeline_tools.apply_mapmaker(args, comm, data, outpath,
"tot_signal")
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
tmr.report_clear(" Map-making {:04d}".format(mc))
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
mctmr.report_clear(" Monte Carlo loop {:04d}".format(mc))
gt.stop_all()
if comm.comm_world is not None:
comm.comm_world.barrier()
tmr.stop()
tmr.clear()
tmr.start()
alltimers = gather_timers(comm=comm.comm_world)
if comm.world_rank == 0:
out = os.path.join(args.outdir, "timing")
dump_timing(alltimers, out)
tmr.stop()
tmr.report("Gather and dump timing info")
timer0.report_clear("toast_satellite_sim.py")
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_planck_reduce (total)")
mpiworld, procs, rank, comm = get_comm()
memreport("at beginning of main", mpiworld)
# This is the 2-level toast communicator. By default,
# there is just one group which spans MPI_COMM_WORLD.
comm = toast.Comm()
if comm.world_rank == 0:
print("Running with {} processes at {}".format(
procs, str(datetime.datetime.now())))
parser = argparse.ArgumentParser(description='Simple MADAM Mapmaking',
fromfile_prefix_chars='@')
parser.add_argument('--rimo', required=True, help='RIMO file')
parser.add_argument('--freq', required=True, type=np.int, help='Frequency')
parser.add_argument('--nside',
required=False,
type=np.int,
default=512,
help='Map resolution')
parser.add_argument('--nside_cross',
required=False,
type=np.int,
default=512,
help='Destriping resolution')
parser.add_argument('--debug',
dest='debug',
default=False,
action='store_true',
help='Write data distribution info to file')
parser.add_argument('--dets',
required=False,
default=None,
help='Detector list (comma separated)')
parser.add_argument('--effdir',
required=True,
help='Input Exchange Format File directory')
parser.add_argument('--effdir_in_diode0',
required=False,
default=None,
help='Input Exchange Format File directory, '
'LFI diode 0')
parser.add_argument('--effdir_in_diode1',
required=False,
default=None,
help='Input Exchange Format File directory, '
'LFI diode 1')
parser.add_argument('--effdir_pntg',
required=False,
help='Input Exchange Format File directory '
'for pointing')
parser.add_argument('--effdir_out',
required=False,
help='Output directory for destriped TOD')
parser.add_argument('--effdir_out_diode0',
required=False,
help='Output directory for destriped TOD, LFI diode 0')
parser.add_argument('--effdir_out_diode1',
required=False,
help='Output directory for destriped TOD, LFI diode 1')
parser.add_argument('--obtmask',
required=False,
default=1,
type=np.int,
help='OBT flag mask')
parser.add_argument('--flagmask',
required=False,
default=1,
type=np.int,
help='Quality flag mask')
parser.add_argument('--pntflagmask',
required=False,
default=0,
type=np.int,
help='Pointing flag mask')
parser.add_argument('--bad_intervals',
required=False,
help='Path to bad interval file.')
parser.add_argument('--ringdb', required=True, help='Ring DB file')
parser.add_argument('--odfirst',
required=False,
default=None,
type=np.int,
help='First OD to use')
parser.add_argument('--odlast',
required=False,
default=None,
type=np.int,
help='Last OD to use')
parser.add_argument('--ringfirst',
required=False,
default=None,
help='First ring to use (can be a list)')
parser.add_argument('--ringlast',
required=False,
default=None,
help='Last ring to use (can be a list)')
parser.add_argument('--obtfirst',
required=False,
default=None,
type=np.float,
help='First OBT to use')
parser.add_argument('--obtlast',
required=False,
default=None,
type=np.float,
help='Last OBT to use')
parser.add_argument('--madampar',
required=False,
default=None,
help='Madam parameter file')
parser.add_argument('--out',
required=False,
default='.',
help='Output directory')
parser.add_argument('--madam_prefix', required=False, help='map prefix')
parser.add_argument('--split_mask',
required=False,
default=None,
help='Intensity mask, non-zero pixels are not split.')
parser.add_argument('--save_leakage_matrices',
dest='save_leakage_matrices',
default=False,
action='store_true',
help='Compile and write out the leakage projection '
'matrices.')
# noise parameters
parser.add_argument('--noisefile',
required=False,
default='RIMO',
help='Path to noise PSD files for noise filter. '
'Tag DETECTOR will be replaced with detector name.')
parser.add_argument('--static_noise',
dest='static_noise',
required=False,
default=False,
action='store_true',
help='Assume constant noise PSD')
parser.add_argument('--filterfile',
required=False,
help='Extra filter file.')
try:
args = parser.parse_args()
except SystemExit:
sys.exit(0)
if comm.comm_world.rank == 0:
print('All parameters:')
print(args, flush=True)
timer = Timer()
timer.start()
nrange = 1
odranges = None
if args.odfirst is not None and args.odlast is not None:
odranges = []
firsts = [int(i) for i in str(args.odfirst).split(',')]
lasts = [int(i) for i in str(args.odlast).split(',')]
for odfirst, odlast in zip(firsts, lasts):
odranges.append((odfirst, odlast))
nrange = len(odranges)
ringranges = None
if args.ringfirst is not None and args.ringlast is not None:
ringranges = []
firsts = [int(i) for i in str(args.ringfirst).split(',')]
lasts = [int(i) for i in str(args.ringlast).split(',')]
for ringfirst, ringlast in zip(firsts, lasts):
ringranges.append((ringfirst, ringlast))
nrange = len(ringranges)
obtranges = None
if args.obtfirst is not None and args.obtlast is not None:
obtranges = []
firsts = [float(i) for i in str(args.obtfirst).split(',')]
lasts = [float(i) for i in str(args.obtlast).split(',')]
for obtfirst, obtlast in zip(firsts, lasts):
obtranges.append((obtfirst, obtlast))
nrange = len(obtranges)
if odranges is None:
odranges = [None] * nrange
if ringranges is None:
ringranges = [None] * nrange
if obtranges is None:
obtranges = [None] * nrange
detectors = None
if args.dets is not None:
detectors = re.split(',', args.dets)
# create the TOD for this observation
if args.noisefile != 'RIMO' and not args.static_noise:
do_eff_cache = True
else:
do_eff_cache = False
tods = []
if args.static_noise:
noisefile = args.noisefile
else:
noisefile = 'RIMO'
for obtrange, ringrange, odrange in zip(obtranges, ringranges, odranges):
tods.append(
tp.Exchange(comm=comm.comm_group,
detectors=detectors,
ringdb=args.ringdb,
effdir_in=args.effdir,
effdir_in_diode0=args.effdir_in_diode0,
effdir_in_diode1=args.effdir_in_diode1,
effdir_pntg=args.effdir_pntg,
obt_range=obtrange,
ring_range=ringrange,
od_range=odrange,
freq=args.freq,
RIMO=args.rimo,
obtmask=args.obtmask,
flagmask=args.flagmask,
pntflagmask=args.pntflagmask,
do_eff_cache=do_eff_cache,
noisefile=noisefile))
rimo = tods[0].rimo
# Make output directory
if not os.path.isdir(args.out) and comm.comm_world.rank == 0:
os.makedirs(args.out)
# Read in madam parameter file
# Allow more than one entry, gather into a list
repeated_keys = ['detset', 'detset_nopol', 'survey']
pars = {}
if comm.comm_world.rank == 0:
pars['kfirst'] = False
pars['temperature_only'] = True
pars['base_first'] = 60.0
pars['nside_map'] = args.nside
pars['nside_cross'] = min(args.nside, args.nside_cross)
pars['nside_submap'] = 16
pars['write_map'] = False
pars['write_binmap'] = True
pars['write_matrix'] = False
pars['write_wcov'] = False
pars['write_hits'] = True
pars['kfilter'] = False
pars['info'] = 3
pars['pixlim_map'] = 1e-3
pars['pixlim_cross'] = 1e-3
if args.madampar:
pat = re.compile(r'\s*(\S+)\s*=\s*(\S+(\s+\S+)*)\s*')
comment = re.compile(r'^#.*')
with open(args.madampar, 'r') as f:
for line in f:
if not comment.match(line):
result = pat.match(line)
if result:
key, value = result.group(1), result.group(2)
if key in repeated_keys:
if key not in pars:
pars[key] = []
pars[key].append(value)
else:
pars[key] = value
# Command line parameters override the ones in the madam parameter file
if 'file_root' not in pars:
pars['file_root'] = 'madam'
if args.madam_prefix is not None:
pars['file_root'] = args.madam_prefix
sfreq = '{:03}'.format(args.freq)
if sfreq not in pars['file_root']:
pars['file_root'] += '_' + sfreq
try:
fsample = {30: 32.51, 44: 46.55, 70: 78.77}[args.freq]
except Exception:
fsample = 180.3737
pars['fsample'] = fsample
pars['path_output'] = args.out
if args.save_leakage_matrices:
pars['write_leakmatrix'] = True
pars = comm.comm_world.bcast(pars, root=0)
if args.noisefile != 'RIMO':
# We split MPI_COMM_WORLD into single process groups, each of
# which is assigned one or more observations (rings)
comm = toast.Comm(groupsize=1)
# This is the distributed data, consisting of one or
# more observations, each distributed over a communicator.
data = toast.Data(comm)
for iobs, tod in enumerate(tods):
if args.noisefile != 'RIMO' and not args.static_noise:
# Use a toast helper method to optimally distribute rings between
# processes.
dist = toast.distribute_discrete(tod.ringsizes, comm.world_size)
my_first_ring, my_n_ring = dist[comm.comm_world.rank]
for my_ring in range(my_first_ring, my_first_ring + my_n_ring):
ringtod = tp.Exchange.from_tod(tod,
my_ring,
comm.comm_group,
noisefile=args.noisefile)
ob = {}
ob['name'] = 'ring{:05}'.format(ringtod.globalfirst_ring)
ob['id'] = ringtod.globalfirst_ring
ob['tod'] = ringtod
ob['intervals'] = ringtod.valid_intervals
ob['baselines'] = None
ob['noise'] = ringtod.noise
data.obs.append(ob)
else:
ob = {}
ob['name'] = 'observation{:04}'.format(iobs)
ob['id'] = 0
ob['tod'] = tod
ob['intervals'] = tod.valid_intervals
ob['baselines'] = None
ob['noise'] = tod.noise
data.obs.append(ob)
comm.comm_world.barrier()
timer.stop()
if comm.comm_world.rank == 0:
timer.report("Metadata queries")
if args.effdir_out is not None or (args.effdir_out_diode0 is not None
and args.effdir_out_diode1 is not None):
do_output = True
else:
do_output = False
# Read in the signal
timer.clear()
timer.start()
reader = tp.OpInputPlanck(signal_name='signal', flags_name='flags')
if comm.comm_world.rank == 0:
print('Reading input signal from {}'.format(args.effdir), flush=True)
reader.exec(data)
comm.comm_world.barrier()
timer.stop()
if comm.comm_world.rank == 0:
timer.report("Read")
tod_name = 'signal'
flags_name = 'flags'
# Optionally filter the signal
apply_filter(args, data)
# Optionally flag bad intervals
if args.bad_intervals is not None:
timer = Timer()
timer.start()
flagger = tp.OpBadIntervals(path=args.bad_intervals)
flagger.exec(data)
timer.stop()
if comm.comm_world.rank == 0:
timer.report("Apply {}".format(args.bad_intervals))
# make a planck Healpix pointing matrix
timer.clear()
timer.start()
mode = 'IQU'
if pars['temperature_only'] == 'T':
mode = 'I'
nside = int(pars['nside_map'])
pointing = tp.OpPointingPlanck(nside=nside,
mode=mode,
RIMO=rimo,
margin=0,
apply_flags=(not do_output),
keep_vel=False,
keep_pos=False,
keep_phase=False,
keep_quats=False)
pointing.exec(data)
comm.comm_world.barrier()
timer.stop()
if comm.comm_world.rank == 0:
timer.report("Pointing Matrix, mode = {}".format(mode))
for obs in data.obs:
obs['tod'].purge_eff_cache()
# for now, we pass in the noise weights from the RIMO.
detweights = {}
for d in tod.detectors:
if d[-1] in '01' and d[-2] != '-':
det = to_radiometer(d)
else:
det = d
net = tod.rimo[det].net
fsample = tod.rimo[det].fsample
detweights[d] = 1.0 / (fsample * net * net)
if do_output:
name_out = 'madam_tod'
else:
name_out = None
timer.clear()
timer.start()
try:
madam = toast.todmap.OpMadam(name=tod_name,
flag_name=flags_name,
apply_flags=do_output,
params=pars,
detweights=detweights,
purge=True,
name_out=name_out,
translate_timestamps=False)
except Exception as e:
raise Exception('{:4} : ERROR: failed to initialize Madam: {}'.format(
comm.comm_world.rank, e))
madam.exec(data)
comm.comm_world.barrier()
timer.stop()
if comm.comm_world.rank == 0:
timer.report("Madam")
if do_output:
timer = Timer()
timer.start()
writer = tp.OpOutputPlanck(signal_name='madam_tod',
flags_name=None,
commonflags_name=None,
effdir_out=args.effdir_out,
effdir_out_diode0=args.effdir_out_diode0,
effdir_out_diode1=args.effdir_out_diode1)
writer.exec(data)
comm.comm_world.barrier()
timer.stop()
if comm.comm_world.rank == 0:
timer.report("Madam output")
memreport("at end of main", mpiworld)
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if comm.world_rank == 0:
out = os.path.join(args.out, "timing")
dump_timing(alltimers, out)
timer.stop()
timer.report("Gather and dump timing info")
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_s4_sim (total)")
timer0 = Timer()
timer0.start()
mpiworld, procs, rank, comm = toast_tools.get_comm()
memreport("at the beginning of the pipeline", comm.comm_world)
args, comm = parse_arguments(comm)
# Initialize madam parameters
madampars = toast_tools.setup_madam(args)
# Load and broadcast the schedule file
schedules = toast_tools.load_schedule(args, comm)
# Load the weather and append to schedules
toast_tools.load_weather(args, comm, schedules)
# load or simulate the focalplane
detweights = s4_tools.load_focalplanes(args, comm, schedules)
# Create the TOAST data object to match the schedule. This will
# include simulating the boresight pointing.
data, telescope_data = s4_tools.create_observations(args, comm, schedules)
memreport("after creating observations", comm.comm_world)
# Optionally rewrite the noise PSD:s in each observation to include
# elevation-dependence
s4_tools.get_elevation_noise(args, comm, data)
totalname = "total"
# Split the communicator for day and season mapmaking
time_comms = toast_tools.get_time_communicators(args, comm, data)
# Expand boresight quaternions into detector pointing weights and
# pixel numbers
toast_tools.expand_pointing(args, comm, data)
# Only purge the pointing if we are NOT going to export the
# data to a TIDAS volume
if args.tidas is None:
for ob in data.obs:
tod = ob["tod"]
try:
tod.free_radec_quats()
except AttributeError:
# These TOD objects do not have RA/Dec quaternions
pass
memreport("after pointing", comm.comm_world)
# Prepare auxiliary information for distributed map objects
memreport("after submaps", comm.comm_world)
# Set up objects to take copies of the TOD at appropriate times
if args.pysm_model:
if schedules is not None:
focalplanes = [
s.telescope.focalplane.detector_data for s in schedules
]
else:
focalplanes = [telescope.focalplane.detector_data]
signalname = s4_tools.simulate_sky_signal(args, comm, data,
focalplanes)
else:
signalname = toast_tools.scan_sky_signal(args, comm, data)
memreport("after PySM", comm.comm_world)
# Loop over Monte Carlos
firstmc = int(args.MC_start)
nmc = int(args.MC_count)
for mc in range(firstmc, firstmc + nmc):
if comm.world_rank == 0:
log.info("Processing MC = {}".format(mc))
# Uncomment to run with new TOAST
#toast_tools.draw_weather(args, comm, data, mc)
outpath = setup_output(args, comm, mc)
if outputs_exist(args, comm, outpath):
if comm.world_rank == 0:
log.info("Outputs already exist, skipping.")
continue
toast.tod.OpCacheClear(totalname).exec(data)
toast_tools.simulate_atmosphere(args, comm, data, mc, totalname)
s4_tools.scale_atmosphere_by_bandpass(args, comm, data, totalname, mc)
memreport("after atmosphere", comm.comm_world)
# update_atmospheric_noise_weights(args, comm, data, freq, mc)
toast_tools.add_signal(args,
comm,
data,
totalname,
signalname,
purge=(mc == firstmc + nmc - 1))
memreport("after adding sky", comm.comm_world)
toast_tools.simulate_noise(args, comm, data, mc, totalname)
memreport("after simulating noise", comm.comm_world)
toast_tools.simulate_sss(args, comm, data, mc, totalname)
memreport("after simulating SSS", comm.comm_world)
toast_tools.scramble_gains(args, comm, data, mc, totalname)
if mc == firstmc:
# For the first realization and frequency, optionally
# export the timestream data.
toast_tools.output_tidas(args, comm, data, totalname)
memreport("after export", comm.comm_world)
if args.no_maps:
continue
# Bin and destripe maps
pairdiff(data, args, comm, totalname, mc == firstmc)
if not args.skip_madam:
toast_tools.apply_madam(
args,
comm,
data,
madampars,
outpath,
detweights,
totalname,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=(mc == firstmc),
)
memreport("after madam", comm.comm_world)
if (args.filterbin_ground_order is not None
or args.filterbin_poly_order is not None):
toast_tools.apply_filterbin(
args,
comm,
data,
outpath,
totalname,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=(mc == firstmc),
)
if (args.apply_polyfilter or args.apply_polyfilter2D
or args.apply_common_mode_filter or args.apply_groundfilter):
# Filter signal
toast_tools.apply_common_mode_filter(args, comm, data, totalname)
toast_tools.apply_polyfilter2D(args, comm, data, totalname)
toast_tools.apply_polyfilter(args, comm, data, totalname)
toast_tools.apply_groundfilter(args, comm, data, totalname)
memreport("after filter", comm.comm_world)
# Bin maps
toast_tools.apply_madam(
args,
comm,
data,
madampars,
outpath,
detweights,
totalname,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=(args.skip_madam and mc == firstmc),
extra_prefix="filtered",
bin_only=(not args.skip_madam),
)
memreport("after filter & bin", comm.comm_world)
if comm.comm_world is not None:
comm.comm_world.barrier()
memreport("at the end of the pipeline", comm.comm_world)
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if rank == 0:
out = os.path.join(args.outdir, "timing")
dump_timing(alltimers, out)
timer.stop()
timer.report("Gather and dump timing info")
timer0.stop()
if comm.world_rank == 0:
timer0.report("toast_s4_sim.py pipeline")
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_planck_reduce (total)")
mpiworld, procs, rank, comm = get_comm()
if comm.comm_world.rank == 0:
print("Running with {} processes at {}".format(
procs, str(datetime.datetime.now())))
parser = argparse.ArgumentParser(description='Planck Ringset making',
fromfile_prefix_chars='@')
parser.add_argument('--rimo', required=True, help='RIMO file')
parser.add_argument('--freq', required=True, type=np.int, help='Frequency')
parser.add_argument('--dets',
required=False,
default=None,
help='Detector list (comma separated)')
parser.add_argument('--effdir',
required=True,
help='Input Exchange Format File directory')
parser.add_argument('--read_eff',
dest='read_eff',
default=False,
action='store_true',
help='Read and co-add the signal from effdir')
parser.add_argument('--effdir_pntg',
required=False,
help='Input Exchange Format File directory for '
'pointing')
parser.add_argument('--obtmask',
required=False,
default=1,
type=np.int,
help='OBT flag mask')
parser.add_argument('--flagmask',
required=False,
default=1,
type=np.int,
help='Quality flag mask')
parser.add_argument('--ringdb', required=True, help='Ring DB file')
parser.add_argument('--odfirst',
required=False,
default=None,
help='First OD to use')
parser.add_argument('--odlast',
required=False,
default=None,
help='Last OD to use')
parser.add_argument('--ringfirst',
required=False,
default=None,
help='First ring to use')
parser.add_argument('--ringlast',
required=False,
default=None,
help='Last ring to use')
parser.add_argument('--obtfirst',
required=False,
default=None,
help='First OBT to use')
parser.add_argument('--obtlast',
required=False,
default=None,
help='Last OBT to use')
parser.add_argument('--out',
required=False,
default='.',
help='Output directory')
dipogroup = parser.add_mutually_exclusive_group()
dipogroup.add_argument('--dipole',
dest='dipole',
required=False,
default=False,
action='store_true',
help='Simulate dipole')
dipogroup.add_argument('--solsys_dipole',
dest='solsys_dipole',
required=False,
default=False,
action='store_true',
help='Simulate solar system dipole')
dipogroup.add_argument('--orbital_dipole',
dest='orbital_dipole',
required=False,
default=False,
action='store_true',
help='Simulate orbital dipole')
# dipole parameters
dipo_parameters_group = parser.add_argument_group('dipole_parameters')
dipo_parameters_group.add_argument(
'--solsys_speed',
dest='solsys_speed',
required=False,
type=np.float,
default=DEFAULT_PARAMETERS["solsys_speed"],
help='Solar system speed wrt. CMB rest frame in km/s. '
'Default is Planck 2015 best fit value')
dipo_parameters_group.add_argument(
'--solsys_glon',
dest='solsys_glon',
required=False,
type=np.float,
default=DEFAULT_PARAMETERS["solsys_glon"],
help='Solar system velocity direction longitude in degrees')
dipo_parameters_group.add_argument(
'--solsys_glat',
dest='solsys_glat',
required=False,
type=np.float,
default=DEFAULT_PARAMETERS["solsys_glat"],
help='Solar system velocity direction latitude in degrees')
# libconviqt parameters
parser.add_argument('--lmax',
required=False,
default=1024,
type=np.int,
help='Simulation lmax')
parser.add_argument('--fwhm',
required=False,
default=0.0,
type=np.float,
help='Sky fwhm [arcmin] to deconvolve')
parser.add_argument('--beammmax',
required=False,
default=None,
type=np.int,
help='Beam mmax')
parser.add_argument('--order',
required=False,
default=11,
type=np.int,
help='Iteration order')
parser.add_argument('--pxx',
required=False,
default=False,
action='store_true',
help='Beams are in Pxx frame, not Dxx')
parser.add_argument('--skyfile',
required=False,
default=None,
help='Path to sky alm files. Tag DETECTOR will be '
'replaced with detector name.')
parser.add_argument('--beamfile',
required=False,
default=None,
help='Path to beam alm files. Tag DETECTOR will be '
'replaced with detector name.')
parser.add_argument('--nopol',
dest='nopol',
default=False,
action='store_true',
help='Sky and beam should be treated unpolarized')
# noise simulation parameters
parser.add_argument('--add_noise',
dest='add_noise',
default=False,
action='store_true',
help='Simulate noise')
parser.add_argument('--noisefile',
required=False,
default='RIMO',
help='Path to noise PSD files for noise filter. '
'Tag DETECTOR will be replaced with detector name.')
parser.add_argument('--noisefile_simu',
required=False,
default='RIMO',
help='Path to noise PSD files for noise simulation. '
'Tag DETECTOR will be replaced with detector name.')
parser.add_argument('--mc',
required=False,
default=0,
type=np.int,
help='Noise realization')
# ringset parameters
parser.add_argument('--nside_ring',
required=False,
default=128,
type=np.int,
help='Ringset resolution')
parser.add_argument('--ring_root',
required=False,
default='ringset',
help='Root filename for ringsets (setting to empty '
'disables ringset output).')
args = parser.parse_args()
if comm.world_rank == 0:
print('All parameters:')
print(args, flush=True)
timer = Timer()
timer.start()
nrange = 1
odranges = None
if args.odfirst is not None and args.odlast is not None:
odranges = []
firsts = [int(i) for i in str(args.odfirst).split(',')]
lasts = [int(i) for i in str(args.odlast).split(',')]
for odfirst, odlast in zip(firsts, lasts):
odranges.append((odfirst, odlast))
nrange = len(odranges)
ringranges = None
if args.ringfirst is not None and args.ringlast is not None:
ringranges = []
firsts = [int(i) for i in str(args.ringfirst).split(',')]
lasts = [int(i) for i in str(args.ringlast).split(',')]
for ringfirst, ringlast in zip(firsts, lasts):
ringranges.append((ringfirst, ringlast))
nrange = len(ringranges)
obtranges = None
if args.obtfirst is not None and args.obtlast is not None:
obtranges = []
firsts = [float(i) for i in str(args.obtfirst).split(',')]
lasts = [float(i) for i in str(args.obtlast).split(',')]
for obtfirst, obtlast in zip(firsts, lasts):
obtranges.append((obtfirst, obtlast))
nrange = len(obtranges)
if odranges is None:
odranges = [None] * nrange
if ringranges is None:
ringranges = [None] * nrange
if obtranges is None:
obtranges = [None] * nrange
detectors = None
if args.dets is not None:
detectors = re.split(',', args.dets)
# Make output directory
if comm.world_rank == 0:
os.makedirs(args.out, exist_ok=True)
do_dipole = args.dipole or args.solsys_dipole or args.orbital_dipole
do_convolve = args.skyfile is not None and args.beamfile is not None
do_noise = args.add_noise
if not do_noise and args.noisefile_simu != 'RIMO':
raise RuntimeError('Did you mean to simulate noise? add_noise = {} '
'but noisefile_simu = {}'.format(
args.add_noise, args.noisefile_simu))
if comm.world_rank == 0:
print('read_eff = {}'.format(args.read_eff))
print('do_dipole = {}'.format(do_dipole))
print('solsys_speed = {}'.format(args.solsys_speed))
print('solsys_glon = {}'.format(args.solsys_glon))
print('solsys_glat = {}'.format(args.solsys_glat))
print('do_convolve = {}'.format(do_convolve))
print('do_noise = {}'.format(do_noise), flush=True)
# create the TOD for the whole data span (loads ring database and caches
# directory contents)
if do_noise and args.noisefile_simu != 'RIMO':
do_eff_cache = True
else:
do_eff_cache = False
tods = []
for obtrange, ringrange, odrange in zip(obtranges, ringranges, odranges):
tods.append(
tp.Exchange(comm=comm.comm_group,
detectors=detectors,
ringdb=args.ringdb,
effdir_in=args.effdir,
effdir_pntg=args.effdir_pntg,
obt_range=obtrange,
ring_range=ringrange,
od_range=odrange,
freq=args.freq,
RIMO=args.rimo,
obtmask=args.obtmask,
flagmask=args.flagmask,
do_eff_cache=do_eff_cache))
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Metadata queries")
if args.noisefile != 'RIMO' or args.noisefile_simu != 'RIMO':
# We split MPI_COMM_WORLD into single process groups, each of
# which is assigned one or more observations (rings)
comm = Comm(groupsize=1)
# This is the distributed data, consisting of one or
# more observations, each distributed over a communicator.
data = Data(comm)
for tod in tods:
if args.noisefile != 'RIMO' or args.noisefile_simu != 'RIMO':
# Use a toast helper method to optimally distribute rings between
# processes.
dist = distribute_discrete(tod.ringsizes, procs)
my_first_ring, my_n_ring = dist[comm.world_rank]
for my_ring in range(my_first_ring, my_first_ring + my_n_ring):
ringtod = tp.Exchange.from_tod(
tod,
my_ring,
comm.comm_group,
noisefile=args.noisefile,
noisefile_simu=args.noisefile_simu)
ob = {}
ob['name'] = 'ring{:05}'.format(ringtod.globalfirst_ring)
ob['id'] = ringtod.globalfirst_ring
ob['tod'] = ringtod
ob['intervals'] = ringtod.valid_intervals
ob['baselines'] = None
ob['noise'] = ringtod.noise
ob['noise_simu'] = ringtod.noise_simu
data.obs.append(ob)
else:
# This is the distributed data, consisting of one or
# more observations, each distributed over a communicator.
ob = {}
ob['name'] = 'mission'
ob['id'] = 0
ob['tod'] = tod
ob['intervals'] = tod.valid_intervals
ob['baselines'] = None
ob['noise'] = tod.noise
data.obs.append(ob)
rimo = tods[0].rimo
fsample = rimo[detectors[0]].fsample
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Create observations")
# make a planck Healpix pointing matrix
mode = 'IQU'
pointing = tp.OpPointingPlanck(nside=args.nside_ring,
mode=mode,
RIMO=rimo,
margin=0,
apply_flags=False,
keep_vel=do_dipole,
keep_pos=False,
keep_phase=False,
keep_quats=(do_dipole or do_convolve))
pointing.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Pointing Matrix")
# Always read the signal because we always need the flags
reader = tp.OpInputPlanck(signal_name='tod')
if comm.world_rank == 0:
print('Reading input signal from {}'.format(args.effdir), flush=True)
reader.exec(data)
comm.comm_world.barrier()
if comm.world_rank == 0:
timer.report_clear("Read")
tod_name = 'tod'
# Clear the signal if we don't need it
if not args.read_eff:
eraser = tp.OpCacheMath(in1='tod', in2=0, multiply=True, out='tod')
if comm.comm_world.rank == 0:
print('Erasing TOD', flush=True)
eraser.exec(data)
comm.comm_world.barrier()
if comm.world_rank == 0:
timer.report_clear("Erase")
if do_convolve:
# simulate the TOD by convolving the sky with the beams
detectordata = []
for det in tod.detectors:
skyfile = args.skyfile.replace('DETECTOR', det)
beamfile = args.beamfile.replace('DETECTOR', det)
epsilon = rimo[det].epsilon
# Getting the right polarization angle can be a sensitive matter.
# Dxx beams are always defined without psi_uv or psi_pol rotation
# but some Pxx beams may require psi_pol to be removed and psi_uv
# left in.
if args.pxx:
# Beam is in the polarization basis.
# No extra rotations are needed
psipol = np.radians(rimo[det].psi_pol)
else:
# Beam is in the detector basis. Convolver needs to remove
# the last rotation into the polarization sensitive frame.
psipol = np.radians(rimo[det].psi_uv + rimo[det].psi_pol)
detectordata.append((det, skyfile, beamfile, epsilon, psipol))
# always construct conviqt with dxx=True and modify the psipol
# to produce the desired rotation.
conviqt = tt.OpSimConviqt(args.lmax,
args.beammmax,
detectordata,
pol=(not args.nopol),
fwhm=args.fwhm,
order=args.order,
calibrate=True,
dxx=True,
out='tod',
quat_name='quats',
apply_flags=False)
conviqt.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Convolution")
tod_name = 'tod'
if do_dipole:
# Simulate the dipole
if args.dipole:
dipomode = 'total'
elif args.solsys_dipole:
dipomode = 'solsys'
else:
dipomode = 'orbital'
dipo = tp.OpDipolePlanck(args.freq,
solsys_speed=args.solsys_speed,
solsys_glon=args.solsys_glon,
solsys_glat=args.solsys_glat,
mode=dipomode,
output='tod',
add_to_existing=args.read_eff)
dipo.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Dipole")
tod_name = 'tod'
if do_noise:
nse = tt.OpSimNoise(out='tod',
realization=args.mc,
component=0,
noise='noise_simu',
rate=fsample)
nse.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Noise simulation")
tod_name = 'tod'
# for now, we pass in the noise weights from the RIMO.
detweights = {}
for d in tod.detectors:
net = tod.rimo[d].net
fsample = tod.rimo[d].fsample
detweights[d] = 1.0 / (fsample * net * net)
# Make rings
ringmaker = tp.OpRingMaker(args.nside_ring,
args.nside_ring,
signal=tod_name,
fileroot=args.ring_root,
out=args.out,
detmask=args.flagmask,
commonmask=args.obtmask)
ringmaker.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Ringmaking")
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if comm.world_rank == 0:
out = os.path.join(args.out, "timing")
dump_timing(alltimers, out)
timer.stop()
timer.report("Gather and dump timing info")
return
def main():
env = Environment.get()
env.enable_function_timers()
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_benchmark (total)")
mpiworld, procs, rank = get_world()
if rank == 0:
log.info("TOAST version = {}".format(env.version()))
log.info("Using a maximum of {} threads per process".format(env.max_threads()))
if mpiworld is None:
log.info("Running serially with one process at {}".format(str(datetime.now())))
else:
if rank == 0:
log.info(
"Running with {} processes at {}".format(procs, str(datetime.now()))
)
cases = {
"tiny": 5000000, # O(1) GB RAM
"xsmall": 50000000, # O(10) GB RAM
"small": 500000000, # O(100) GB RAM
"medium": 5000000000, # O(1) TB RAM
"large": 50000000000, # O(10) TB RAM
"xlarge": 500000000000, # O(100) TB RAM
"heroic": 5000000000000, # O(1000) TB RAM
}
args, comm, n_nodes, n_detector, case, group_seconds, n_group = job_config(
mpiworld, cases
)
# Note: The number of "days" here will just be an approximation of the desired
# data volume since we are doing a realistic schedule for a real observing site.
n_days = int(2.0 * (group_seconds * n_group) / (24 * 3600))
if n_days == 0:
n_days = 1
if rank == 0:
log.info(
"Using {} detectors for approximately {} days".format(n_detector, n_days)
)
# Create the schedule file and input maps on one process
if rank == 0:
create_schedules(args, group_seconds, n_days)
create_input_maps(args)
if mpiworld is not None:
mpiworld.barrier()
if args.dry_run is not None:
if rank == 0:
log.info("Exit from dry run")
# We are done!
sys.exit(0)
gt.start("toast_benchmark (science work)")
# Load and broadcast the schedule file
schedules = pipeline_tools.load_schedule(args, comm)
# Load the weather and append to schedules
pipeline_tools.load_weather(args, comm, schedules)
# Simulate the focalplane
detweights = create_focalplanes(args, comm, schedules, n_detector)
# Create the TOAST data object to match the schedule. This will
# include simulating the boresight pointing.
data, telescope_data, total_samples = create_observations(args, comm, schedules)
# handle = None
# if comm.world_rank == 0:
# handle = open(os.path.join(args.outdir, "distdata.txt"), "w")
# data.info(handle)
# if comm.world_rank == 0:
# handle.close()
# if comm.comm_world is not None:
# comm.comm_world.barrier()
# Split the communicator for day and season mapmaking
time_comms = pipeline_tools.get_time_communicators(args, comm, data)
# Expand boresight quaternions into detector pointing weights and
# pixel numbers
pipeline_tools.expand_pointing(args, comm, data)
# Optionally rewrite the noise PSD:s in each observation to include
# elevation-dependence
pipeline_tools.get_elevation_noise(args, comm, data)
# Purge the pointing if we are NOT going to export the
# data to a TIDAS volume
if (args.tidas is None) and (args.spt3g is None):
for ob in data.obs:
tod = ob["tod"]
tod.free_radec_quats()
# Prepare auxiliary information for distributed map objects
signalname = pipeline_tools.scan_sky_signal(args, comm, data, "signal")
# Set up objects to take copies of the TOD at appropriate times
totalname, totalname_freq = setup_sigcopy(args)
# Loop over Monte Carlos
firstmc = args.MC_start
nsimu = args.MC_count
freqs = [float(freq) for freq in args.freq.split(",")]
nfreq = len(freqs)
for mc in range(firstmc, firstmc + nsimu):
pipeline_tools.simulate_atmosphere(args, comm, data, mc, totalname)
# Loop over frequencies with identical focal planes and identical
# atmospheric noise.
for ifreq, freq in enumerate(freqs):
if comm.world_rank == 0:
log.info(
"Processing frequency {}GHz {} / {}, MC = {}".format(
freq, ifreq + 1, nfreq, mc
)
)
# Make a copy of the atmosphere so we can scramble the gains and apply
# frequency-dependent scaling.
pipeline_tools.copy_signal(args, comm, data, totalname, totalname_freq)
pipeline_tools.scale_atmosphere_by_frequency(
args, comm, data, freq=freq, mc=mc, cache_name=totalname_freq
)
pipeline_tools.update_atmospheric_noise_weights(args, comm, data, freq, mc)
# Add previously simulated sky signal to the atmospheric noise.
pipeline_tools.add_signal(
args, comm, data, totalname_freq, signalname, purge=(nsimu == 1)
)
mcoffset = ifreq * 1000000
pipeline_tools.simulate_noise(
args, comm, data, mc + mcoffset, totalname_freq
)
pipeline_tools.scramble_gains(
args, comm, data, mc + mcoffset, totalname_freq
)
outpath = setup_output(args, comm, mc + mcoffset, freq)
# Bin and destripe maps
pipeline_tools.apply_mapmaker(
args,
comm,
data,
outpath,
totalname_freq,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=(mc == firstmc),
)
if args.apply_polyfilter or args.apply_groundfilter:
# Filter signal
pipeline_tools.apply_polyfilter(args, comm, data, totalname_freq)
pipeline_tools.apply_groundfilter(args, comm, data, totalname_freq)
# Bin filtered maps
pipeline_tools.apply_mapmaker(
args,
comm,
data,
outpath,
totalname_freq,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=False,
extra_prefix="filtered",
bin_only=True,
)
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
runtime = gt.seconds("toast_benchmark (science work)")
prefactor = 1.0e-3
kilo_samples = 1.0e-3 * total_samples
sample_factor = 1.2
det_factor = 2.0
metric = (
prefactor
* n_detector ** det_factor
* kilo_samples ** sample_factor
/ (n_nodes * runtime)
)
if rank == 0:
msg = "Science Metric: {:0.1e} * ({:d}**{:0.2f}) * ({:0.3e}**{:0.3f}) / ({:0.1f} * {}) = {:0.2f}".format(
prefactor,
n_detector,
det_factor,
kilo_samples,
sample_factor,
runtime,
n_nodes,
metric,
)
log.info("")
log.info(msg)
log.info("")
with open(os.path.join(args.outdir, "log"), "a") as f:
f.write(msg)
f.write("\n\n")
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if comm.world_rank == 0:
out = os.path.join(args.outdir, "timing")
dump_timing(alltimers, out)
with open(os.path.join(args.outdir, "log"), "a") as f:
f.write("Copy of Global Timers:\n")
with open("{}.csv".format(out), "r") as t:
f.write(t.read())
timer.stop()
timer.report("Gather and dump timing info")
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_ground_sim (total)")
timer0 = Timer()
timer0.start()
mpiworld, procs, rank, comm = get_comm()
args, comm = parse_arguments(comm)
# Initialize madam parameters
madampars = setup_madam(args)
# Load and broadcast the schedule file
schedules = load_schedule(args, comm)
# Load the weather and append to schedules
load_weather(args, comm, schedules)
# load or simulate the focalplane
detweights = load_focalplanes(args, comm, schedules)
# Create the TOAST data object to match the schedule. This will
# include simulating the boresight pointing.
data, telescope_data = create_observations(args, comm, schedules)
# Split the communicator for day and season mapmaking
time_comms = get_time_communicators(args, comm, data)
# Expand boresight quaternions into detector pointing weights and
# pixel numbers
expand_pointing(args, comm, data)
# Purge the pointing if we are NOT going to export the
# data to a TIDAS volume
if (args.tidas is None) and (args.spt3g is None):
for ob in data.obs:
tod = ob["tod"]
tod.free_radec_quats()
# Prepare auxiliary information for distributed map objects
_, localsm, subnpix = get_submaps(args, comm, data)
if args.pysm_model:
focalplanes = [s.telescope.focalplane.detector_data for s in schedules]
signalname = simulate_sky_signal(args, comm, data, focalplanes,
subnpix, localsm, "signal")
else:
signalname = scan_sky_signal(args, comm, data, localsm, subnpix,
"signal")
# Set up objects to take copies of the TOD at appropriate times
totalname, totalname_freq = setup_sigcopy(args)
# Loop over Monte Carlos
firstmc = args.MC_start
nsimu = args.MC_count
freqs = [float(freq) for freq in args.freq.split(",")]
nfreq = len(freqs)
for mc in range(firstmc, firstmc + nsimu):
simulate_atmosphere(args, comm, data, mc, totalname)
# Loop over frequencies with identical focal planes and identical
# atmospheric noise.
for ifreq, freq in enumerate(freqs):
if comm.world_rank == 0:
log.info("Processing frequency {}GHz {} / {}, MC = {}".format(
freq, ifreq + 1, nfreq, mc))
# Make a copy of the atmosphere so we can scramble the gains and apply
# frequency-dependent scaling.
copy_signal(args, comm, data, totalname, totalname_freq)
scale_atmosphere_by_frequency(args,
comm,
data,
freq=freq,
mc=mc,
cache_name=totalname_freq)
update_atmospheric_noise_weights(args, comm, data, freq, mc)
# Add previously simulated sky signal to the atmospheric noise.
add_signal(args,
comm,
data,
totalname_freq,
signalname,
purge=(nsimu == 1))
mcoffset = ifreq * 1000000
simulate_noise(args, comm, data, mc + mcoffset, totalname_freq)
simulate_sss(args, comm, data, mc + mcoffset, totalname_freq)
scramble_gains(args, comm, data, mc + mcoffset, totalname_freq)
if (mc == firstmc) and (ifreq == 0):
# For the first realization and frequency, optionally
# export the timestream data.
output_tidas(args, comm, data, totalname)
output_spt3g(args, comm, data, totalname)
outpath = setup_output(args, comm, mc + mcoffset, freq)
# Bin and destripe maps
apply_madam(
args,
comm,
data,
madampars,
outpath,
detweights,
totalname_freq,
freq=freq,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=(mc == firstmc),
)
if args.apply_polyfilter or args.apply_groundfilter:
# Filter signal
apply_polyfilter(args, comm, data, totalname_freq)
apply_groundfilter(args, comm, data, totalname_freq)
# Bin filtered maps
apply_madam(
args,
comm,
data,
madampars,
outpath,
detweights,
totalname_freq,
freq=freq,
time_comms=time_comms,
telescope_data=telescope_data,
first_call=False,
extra_prefix="filtered",
bin_only=True,
)
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if comm.world_rank == 0:
out = os.path.join(args.outdir, "timing")
dump_timing(alltimers, out)
timer.stop()
timer.report("Gather and dump timing info")
timer0.report_clear("toast_ground_sim.py")
return
def main():
env = Environment.get()
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_satellite_sim (total)")
timer0 = Timer()
timer0.start()
mpiworld, procs, rank, comm = get_comm()
args, comm, groupsize = parse_arguments(comm, procs)
# Parse options
tmr = Timer()
tmr.start()
if comm.world_rank == 0:
os.makedirs(args.outdir, exist_ok=True)
focalplane, gain, detweights = load_focalplane(args, comm)
data = create_observations(args, comm, focalplane, groupsize)
expand_pointing(args, comm, data)
localpix, localsm, subnpix = get_submaps(args, comm, data)
signalname = None
skyname = simulate_sky_signal(args, comm, data, [focalplane], subnpix,
localsm, "signal")
if skyname is not None:
signalname = skyname
diponame = simulate_dipole(args, comm, data, "signal")
if diponame is not None:
signalname = diponame
# Mapmaking.
if not args.use_madam:
if comm.world_rank == 0:
log.info("Not using Madam, will only make a binned map")
npp, zmap = init_binner(args,
comm,
data,
detweights,
subnpix=subnpix,
localsm=localsm)
# Loop over Monte Carlos
firstmc = args.MC_start
nmc = args.MC_count
for mc in range(firstmc, firstmc + nmc):
mctmr = Timer()
mctmr.start()
outpath = os.path.join(args.outdir, "mc_{:03d}".format(mc))
simulate_noise(args, comm, data, mc, "tot_signal", overwrite=True)
# add sky signal
add_signal(args, comm, data, "tot_signal", signalname)
if gain is not None:
timer = Timer()
timer.start()
op_apply_gain = OpApplyGain(gain, name="tot_signal")
op_apply_gain.exec(data)
if comm.world_rank == 0:
timer.report_clear(" Apply gains {:04d}".format(mc))
if mc == firstmc:
# For the first realization, optionally export the
# timestream data. If we had observation intervals defined,
# we could pass "use_interval=True" to the export operators,
# which would ensure breaks in the exported data at
# acceptable places.
output_tidas(args, comm, data, "tot_signal")
output_spt3g(args, comm, data, "tot_signal")
apply_binner(args, comm, data, npp, zmap, detweights, outpath,
"tot_signal")
if comm.world_rank == 0:
mctmr.report_clear(" Map-making {:04d}".format(mc))
else:
# Initialize madam parameters
madampars = setup_madam(args)
# in debug mode, print out data distribution information
if args.debug:
handle = None
if comm.world_rank == 0:
handle = open(os.path.join(args.outdir, "distdata.txt"), "w")
data.info(handle)
if comm.world_rank == 0:
handle.close()
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
tmr.report_clear("Dumping data distribution")
# Loop over Monte Carlos
firstmc = args.MC_start
nmc = args.MC_count
for mc in range(firstmc, firstmc + nmc):
mctmr = Timer()
mctmr.start()
# create output directory for this realization
outpath = os.path.join(args.outdir, "mc_{:03d}".format(mc))
simulate_noise(args, comm, data, mc, "tot_signal", overwrite=True)
# add sky signal
add_signal(args, comm, data, "tot_signal", signalname)
if gain is not None:
op_apply_gain = OpApplyGain(gain, name="tot_signal")
op_apply_gain.exec(data)
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
tmr.report_clear(" Apply gains {:04d}".format(mc))
apply_madam(args, comm, data, madampars, outpath, detweights,
"tot_signal")
if comm.comm_world is not None:
comm.comm_world.barrier()
if comm.world_rank == 0:
mctmr.report_clear(" Map-making {:04d}".format(mc))
gt.stop_all()
if comm.comm_world is not None:
comm.comm_world.barrier()
tmr.stop()
tmr.clear()
tmr.start()
alltimers = gather_timers(comm=comm.comm_world)
if comm.world_rank == 0:
out = os.path.join(args.outdir, "timing")
dump_timing(alltimers, out)
tmr.stop()
tmr.report("Gather and dump timing info")
timer0.report_clear("toast_satellite_sim.py")
return
def main():
log = Logger.get()
gt = GlobalTimers.get()
gt.start("toast_planck_reduce (total)")
mpiworld, procs, rank, comm = get_comm()
if comm.world_rank == 0:
print("Running with {} processes at {}".format(
procs, str(datetime.datetime.now())))
parser = argparse.ArgumentParser(description='Simple dipole pipeline',
fromfile_prefix_chars='@')
parser.add_argument('--rimo', required=True, help='RIMO file')
parser.add_argument('--freq', required=True, type=np.int, help='Frequency')
parser.add_argument('--dets',
required=False,
default=None,
help='Detector list (comma separated)')
parser.add_argument('--effdir',
required=True,
help='Input Exchange Format File directory')
parser.add_argument('--effdir_pntg',
required=False,
help='Input Exchange Format File directory for '
'pointing')
parser.add_argument('--obtmask',
required=False,
default=1,
type=np.int,
help='OBT flag mask')
parser.add_argument('--flagmask',
required=False,
default=1,
type=np.int,
help='Quality flag mask')
parser.add_argument('--pntflagmask',
required=False,
default=0,
type=np.int,
help='Which OBT flag bits to raise for HCM maneuvers')
parser.add_argument('--ringdb', required=True, help='Ring DB file')
parser.add_argument('--odfirst',
required=False,
default=None,
help='First OD to use')
parser.add_argument('--odlast',
required=False,
default=None,
help='Last OD to use')
parser.add_argument('--ringfirst',
required=False,
default=None,
help='First ring to use')
parser.add_argument('--ringlast',
required=False,
default=None,
help='Last ring to use')
parser.add_argument('--obtfirst',
required=False,
default=None,
help='First OBT to use')
parser.add_argument('--obtlast',
required=False,
default=None,
help='Last OBT to use')
parser.add_argument('--out',
required=False,
default='.',
help='Output directory')
# Dipole parameters
dipogroup = parser.add_mutually_exclusive_group()
dipogroup.add_argument('--dipole',
dest='dipole',
required=False,
default=False,
action='store_true',
help='Simulate dipole')
dipogroup.add_argument('--solsys-dipole',
required=False,
default=False,
action='store_true',
help='Simulate solar system dipole')
dipogroup.add_argument('--orbital-dipole',
required=False,
default=False,
action='store_true',
help='Simulate orbital dipole')
dipo_parameters_group = parser.add_argument_group('dipole_parameters')
dipo_parameters_group.add_argument(
'--solsys_speed',
required=False,
type=np.float,
default=DEFAULT_PARAMETERS["solsys_speed"],
help='Solar system speed wrt. CMB rest frame in km/s. Default is '
'Planck 2015 best fit value')
dipo_parameters_group.add_argument(
'--solsys-glon',
required=False,
type=np.float,
default=DEFAULT_PARAMETERS["solsys_glon"],
help='Solar system velocity direction longitude in degrees')
dipo_parameters_group.add_argument(
'--solsys-glat',
required=False,
type=np.float,
default=DEFAULT_PARAMETERS["solsys_glat"],
help='Solar system velocity direction latitude in degrees')
try:
args = parser.parse_args()
except SystemExit:
sys.exit(0)
if comm.world_rank == 0:
print('All parameters:')
print(args, flush=True)
timer = Timer()
timer.start()
do_dipole = args.dipole or args.solsys_dipole or args.orbital_dipole
if not do_dipole:
raise RuntimeError(
"You have to set dipole, solsys-dipole or orbital-dipole")
nrange = 1
odranges = None
if args.odfirst is not None and args.odlast is not None:
odranges = []
firsts = [int(i) for i in str(args.odfirst).split(',')]
lasts = [int(i) for i in str(args.odlast).split(',')]
for odfirst, odlast in zip(firsts, lasts):
odranges.append((odfirst, odlast))
nrange = len(odranges)
ringranges = None
if args.ringfirst is not None and args.ringlast is not None:
ringranges = []
firsts = [int(i) for i in str(args.ringfirst).split(',')]
lasts = [int(i) for i in str(args.ringlast).split(',')]
for ringfirst, ringlast in zip(firsts, lasts):
ringranges.append((ringfirst, ringlast))
nrange = len(ringranges)
obtranges = None
if args.obtfirst is not None and args.obtlast is not None:
obtranges = []
firsts = [float(i) for i in str(args.obtfirst).split(',')]
lasts = [float(i) for i in str(args.obtlast).split(',')]
for obtfirst, obtlast in zip(firsts, lasts):
obtranges.append((obtfirst, obtlast))
nrange = len(obtranges)
if odranges is None:
odranges = [None] * nrange
if ringranges is None:
ringranges = [None] * nrange
if obtranges is None:
obtranges = [None] * nrange
detectors = None
if args.dets is not None:
detectors = re.split(',', args.dets)
# create the TOD for this observation
tods = []
for obtrange, ringrange, odrange in zip(obtranges, ringranges, odranges):
# create the TOD for this observation
tods.append(
tp.Exchange(comm=comm.comm_group,
detectors=detectors,
ringdb=args.ringdb,
effdir_in=args.effdir,
effdir_pntg=args.effdir_pntg,
obt_range=obtrange,
ring_range=ringrange,
od_range=odrange,
freq=args.freq,
RIMO=args.rimo,
obtmask=args.obtmask,
flagmask=args.flagmask,
pntflagmask=args.pntflagmask,
do_eff_cache=False))
# Make output directory
if not os.path.isdir(args.out) and comm.world_rank == 0:
os.makedirs(args.out)
# This is the distributed data, consisting of one or
# more observations, each distributed over a communicator.
data = toast.Data(comm)
for iobs, tod in enumerate(tods):
ob = {}
ob['name'] = 'observation{:04}'.format(iobs)
ob['id'] = 0
ob['tod'] = tod
ob['intervals'] = tod.valid_intervals
ob['baselines'] = None
ob['noise'] = tod.noise
ob['noise_simu'] = tod.noise
data.obs.append(ob)
rimo = tods[0].rimo
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Metadata queries")
# Always read the signal and flags, even if the signal is later
# overwritten. There is no overhead for the signal because it is
# interlaced with the flags.
tod_name = 'signal'
timestamps_name = 'timestamps'
flags_name = 'flags'
common_flags_name = 'common_flags'
reader = tp.OpInputPlanck(signal_name=tod_name,
flags_name=flags_name,
timestamps_name=timestamps_name,
commonflags_name=common_flags_name)
if comm.world_rank == 0:
print('Reading input signal from {}'.format(args.effdir), flush=True)
reader.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Read")
"""
# Clear the signal
eraser = tp.OpCacheMath(in1=tod_name, in2=0, multiply=True,
out=tod_name)
if comm.world_rank == 0:
print('Erasing TOD', flush=True)
eraser.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Erase")
"""
# make a planck Healpix pointing matrix
mode = 'IQU'
nside = 512
pointing = tp.OpPointingPlanck(nside=nside,
mode=mode,
RIMO=rimo,
margin=0,
apply_flags=True,
keep_vel=do_dipole,
keep_pos=False,
keep_phase=False,
keep_quats=do_dipole)
pointing.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Pointing Matrix")
flags_name = 'flags'
common_flags_name = 'common_flags'
# Simulate the dipole
if args.dipole:
dipomode = 'total'
elif args.solsys_dipole:
dipomode = 'solsys'
else:
dipomode = 'orbital'
dipo = tp.OpDipolePlanck(args.freq,
solsys_speed=args.solsys_speed,
solsys_glon=args.solsys_glon,
solsys_glat=args.solsys_glat,
mode=dipomode,
output='dipole',
keep_quats=False,
npipe_mode=True)
dipo.exec(data)
dipo = tp.OpDipolePlanck(args.freq,
solsys_speed=args.solsys_speed,
solsys_glon=args.solsys_glon,
solsys_glat=args.solsys_glat,
mode=dipomode,
output='dipole4pi',
keep_quats=False,
npipe_mode=False,
lfi_mode=False)
dipo.exec(data)
if mpiworld is not None:
mpiworld.barrier()
if comm.world_rank == 0:
timer.report_clear("Dipole")
# Write out the values in ASCII
for iobs, obs in enumerate(data.obs):
tod = obs["tod"]
times = tod.local_times()
velocity = tod.local_velocity()
for det in tod.local_dets:
quat = tod.local_pointing(det)
angles = np.vstack(qarray.to_angles(quat)).T
signal = tod.local_signal(det)
dipole = tod.local_signal(det, "dipole")
dipole4pi = tod.local_signal(det, "dipole4pi")
fname_out = os.path.join(
args.out,
"{}_dipole.{}.{}.{}.txt".format(dipomode, comm.world_rank,
iobs, det))
with open(fname_out, "w") as fout:
for t, ang, vel, sig, dipo, dipo4pi in zip(
times, angles, velocity, signal, dipole, dipole4pi):
fout.write(
(10 * " {}" + "\n").format(t, *ang, *vel, sig, dipo,
dipo4pi))
print("{} : Wrote {}".format(comm.world_rank, fname_out))
if comm.world_rank == 0:
timer.report_clear("Write dipole")
gt.stop_all()
if mpiworld is not None:
mpiworld.barrier()
timer = Timer()
timer.start()
alltimers = gather_timers(comm=mpiworld)
if comm.world_rank == 0:
out = os.path.join(args.out, "timing")
dump_timing(alltimers, out)
timer.stop()
timer.report("Gather and dump timing info")
return