def get_default_species_colors(sim):
out = {}
for species_name in sim.get_species_names():
out[species_name] = None
for solute_name in sim.get_solute_names():
if solute_name in out.keys():
continue
out[solute_name] = None
html = toolbox_plotting.distinguishable_colors(len(out.keys()))
for name in out.keys():
out[name] = html.pop(0)
return out
def get_default_species_colors(sim):
out = {}
for species_name in sim.get_species_names():
out[species_name] = None
for solute_name in sim.get_solute_names():
if solute_name in out.keys():
continue
out[solute_name] = None
html = toolbox_plotting.distinguishable_colors(len(out.keys()))
for name in out.keys():
out[name] = html.pop(0)
return out
def get_default_species_colors(sim):
out = {}
nonplasmids = []
plasmids = []
for species_name in sim.get_species_names():
if 'plasmid' in species_name.lower():
plasmids.append(species_name)
continue
nonplasmids.append(species_name)
for solute_name in sim.get_solute_names():
if solute_name in plasmids+nonplasmids:
continue
out[solute_name] = None
suffixes = ['']
for plasmid_name in sorted(plasmids):
suffixes.extend([elem+'_'+plasmid_name for elem in suffixes])
for species_name in nonplasmids:
for suffix in suffixes:
out[species_name+suffix] = None
html = toolbox_plotting.distinguishable_colors(len(out.keys()))
for name in out.keys():
out[name] = html.pop(0)
return out
